NO18G02530, NO18G02530 (gene) Nannochloropsis oceanica

Overview
NameNO18G02530
Unique NameNO18G02530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1691
Alignment locationchr18:823101..824791 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:823101..824791 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR036600PAH_sf
IPR003822PAH
Homology
The following BLAST results are available for this feature:
BLAST of NO18G02530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL010nonsL010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR094ncniR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02530.1NO18G02530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02530.1NO18G02530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02530 ID=NO18G02530|Name=NO18G02530|organism=Nannochloropsis oceanica|type=gene|length=1691bp
ATGTGCGAGAAGgtgggtcgtgcttgatcgccagttgcgaagtgtcgtgt
ggatttgtgtcgattgatgaatgattgccagtggataccaagataatgaa
gagatgggagggtgggtggtaaggtgtgtgcgagcctgtctgtctgtcgt
tgttgacactgatataacacaggggaatgaagcgaggaggaagggatagc
tctatttcttgcctcgcttcttcctccgagctcgtcgtcgtgtgatggtg
tatgtatacacaattgaacagcgaacgtaggataaacaacgggaaagggg
tgaggaaggagagacactgacacgttaatgtgtgtaggctgggagtgagg
agacgaaaatagaagggacgcctcttctcttgtctactttgtccccaagc
caccccaccctctctccccctcttatcgtcgatattttgcgaactctgcc
ccctttcctccagattcacaaggcctcccttcctctactcacacaacaaa
cagAAATCCCTCTTGGATTGCTGGACTCCAGCGTTAGGCGCAGCAGCCTC
AGGCACTTACGAACACACGTACGAGGAAAAAGCGGATGAAATGGGAGTGA
CTCCCCCCACCCCCCATCTCTGTACCGTCTTGCCGCACCATAATATCGAC
TGCCAGCAGCACCAGTCATTGTCGTCATCGTTGGCCGTGTGGAGGGGCCC
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGGATGGAGGAGG
AGGAAGAGAAGGAGGAGGAGGCTGATTTTCCTAGTGTGGTGGCCGTGGTT
CCGGAATACTTGATGGAGGTGGACGACGAGACAGAGGTCGAGGACAAAGA
CGAGGACGAGGACGAGGACGAGGACGAGCAGGCGTCAGAGGCAGAAGAGg
tgggcattttggtctgtgtctggagaagcctctcattcctcacacgctca
aatccctccctccctccctccctcctccctcagCGCCATTCCCTCCGCGA
ACGGAACAAGGACGACTTCCTGCGGGCACGAAACTTCATCCTTCGGGTCA
AGCACAGGTTTGGTCCCAGAAGGGAGGGGGAATACAGGCTCTTCCTTAAG
GTGCTGCAGACGTTTGTAGAGCAGGAGgtagggagtgacggagggcaaaa
aggaaggagggagggagggagggaaagagggagggtgggtgggagggacg
gaggagcctttctttctttctccaacaccatcgaaccattcctccctccc
tccctccctccctccctccctccctcccgcagAAACAAGGATGTGACTGG
GCGGTGTCGTCTCGCGGCGTTCTCTCACAGGCGCTGCAGCTCTTCCGCGG
CCATCCTGACCTGCTCCACGGCTTCTCGTACTTCCTTCCTCCTTGTTTGC
AGgtacttctttgccttcctcccctccctccctccctccccatccctccc
tccctccccatccctccctccctcctcccctggtgaaggcttttcgatgc
atgtgtctcgtttgcgtttggtcgtaacgcactcaccttccttccctccc
tccctccctccctccctccctccctccctctctcagGCAGAGGCGCGCGA
GCACGTGGTGGCGGCAGGTGCTGCCCGGCCTCTGTTTCAGGAGAGGCCTA
GAGCGGACTTCCCTCGAGAGCGGCTGGCCATGGATGAGTGA
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protein sequence of NO18G02530.1

>NO18G02530.1-protein ID=NO18G02530.1-protein|Name=NO18G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MCEKKSLLDCWTPALGAAASGTYEHTYEEKADEMGVTPPTPHLCTVLPHH
NIDCQQHQSLSSSLAVWRGPQQQQQQQQQQQQGMEEEEEKEEEADFPSVV
AVVPEYLMEVDDETEVEDKDEDEDEDEDEQASEAEERHSLRERNKDDFLR
ARNFILRVKHRFGPRREGEYRLFLKVLQTFVEQEKQGCDWAVSSRGVLSQ
ALQLFRGHPDLLHGFSYFLPPCLQAEAREHVVAAGAARPLFQERPRADFP
RERLAMDE*
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Synonyms
Publications