NO18G02530.1, NO18G02530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02530.1
Unique NameNO18G02530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length777
Alignment locationchr18:823101..824791 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:823101..824791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G02530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02530NO18G02530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02530.1NO18G02530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02530.1.cds1NO18G02530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02530.1.cds2NO18G02530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02530.1.cds3NO18G02530.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02530.1.cds4NO18G02530.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02530.1.cds5NO18G02530.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02530.1 ID=NO18G02530.1|Name=NO18G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=777bp
ATGTGCGAGAAGAAATCCCTCTTGGATTGCTGGACTCCAGCGTTAGGCGC
AGCAGCCTCAGGCACTTACGAACACACGTACGAGGAAAAAGCGGATGAAA
TGGGAGTGACTCCCCCCACCCCCCATCTCTGTACCGTCTTGCCGCACCAT
AATATCGACTGCCAGCAGCACCAGTCATTGTCGTCATCGTTGGCCGTGTG
GAGGGGCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGGA
TGGAGGAGGAGGAAGAGAAGGAGGAGGAGGCTGATTTTCCTAGTGTGGTG
GCCGTGGTTCCGGAATACTTGATGGAGGTGGACGACGAGACAGAGGTCGA
GGACAAAGACGAGGACGAGGACGAGGACGAGGACGAGCAGGCGTCAGAGG
CAGAAGAGCGCCATTCCCTCCGCGAACGGAACAAGGACGACTTCCTGCGG
GCACGAAACTTCATCCTTCGGGTCAAGCACAGGTTTGGTCCCAGAAGGGA
GGGGGAATACAGGCTCTTCCTTAAGGTGCTGCAGACGTTTGTAGAGCAGG
AGAAACAAGGATGTGACTGGGCGGTGTCGTCTCGCGGCGTTCTCTCACAG
GCGCTGCAGCTCTTCCGCGGCCATCCTGACCTGCTCCACGGCTTCTCGTA
CTTCCTTCCTCCTTGTTTGCAGGCAGAGGCGCGCGAGCACGTGGTGGCGG
CAGGTGCTGCCCGGCCTCTGTTTCAGGAGAGGCCTAGAGCGGACTTCCCT
CGAGAGCGGCTGGCCATGGATGAGTGA
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protein sequence of NO18G02530.1

>NO18G02530.1-protein ID=NO18G02530.1-protein|Name=NO18G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MCEKKSLLDCWTPALGAAASGTYEHTYEEKADEMGVTPPTPHLCTVLPHH
NIDCQQHQSLSSSLAVWRGPQQQQQQQQQQQQGMEEEEEKEEEADFPSVV
AVVPEYLMEVDDETEVEDKDEDEDEDEDEQASEAEERHSLRERNKDDFLR
ARNFILRVKHRFGPRREGEYRLFLKVLQTFVEQEKQGCDWAVSSRGVLSQ
ALQLFRGHPDLLHGFSYFLPPCLQAEAREHVVAAGAARPLFQERPRADFP
RERLAMDE*
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mRNA from alignment at chr18:823101..824791+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02530.1 ID=NO18G02530.1|Name=NO18G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1691bp|location=Sequence derived from alignment at chr18:823101..824791+ (Nannochloropsis oceanica)
ATGTGCGAGAAGGTGGGTCGTGCTTGATCGCCAGTTGCGAAGTGTCGTGT
GGATTTGTGTCGATTGATGAATGATTGCCAGTGGATACCAAGATAATGAA
GAGATGGGAGGGTGGGTGGTAAGGTGTGTGCGAGCCTGTCTGTCTGTCGT
TGTTGACACTGATATAACACAGGGGAATGAAGCGAGGAGGAAGGGATAGC
TCTATTTCTTGCCTCGCTTCTTCCTCCGAGCTCGTCGTCGTGTGATGGTG
TATGTATACACAATTGAACAGCGAACGTAGGATAAACAACGGGAAAGGGG
TGAGGAAGGAGAGACACTGACACGTTAATGTGTGTAGGCTGGGAGTGAGG
AGACGAAAATAGAAGGGACGCCTCTTCTCTTGTCTACTTTGTCCCCAAGC
CACCCCACCCTCTCTCCCCCTCTTATCGTCGATATTTTGCGAACTCTGCC
CCCTTTCCTCCAGATTCACAAGGCCTCCCTTCCTCTACTCACACAACAAA
CAGAAATCCCTCTTGGATTGCTGGACTCCAGCGTTAGGCGCAGCAGCCTC
AGGCACTTACGAACACACGTACGAGGAAAAAGCGGATGAAATGGGAGTGA
CTCCCCCCACCCCCCATCTCTGTACCGTCTTGCCGCACCATAATATCGAC
TGCCAGCAGCACCAGTCATTGTCGTCATCGTTGGCCGTGTGGAGGGGCCC
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGGATGGAGGAGG
AGGAAGAGAAGGAGGAGGAGGCTGATTTTCCTAGTGTGGTGGCCGTGGTT
CCGGAATACTTGATGGAGGTGGACGACGAGACAGAGGTCGAGGACAAAGA
CGAGGACGAGGACGAGGACGAGGACGAGCAGGCGTCAGAGGCAGAAGAGG
TGGGCATTTTGGTCTGTGTCTGGAGAAGCCTCTCATTCCTCACACGCTCA
AATCCCTCCCTCCCTCCCTCCCTCCTCCCTCAGCGCCATTCCCTCCGCGA
ACGGAACAAGGACGACTTCCTGCGGGCACGAAACTTCATCCTTCGGGTCA
AGCACAGGTTTGGTCCCAGAAGGGAGGGGGAATACAGGCTCTTCCTTAAG
GTGCTGCAGACGTTTGTAGAGCAGGAGGTAGGGAGTGACGGAGGGCAAAA
AGGAAGGAGGGAGGGAGGGAGGGAAAGAGGGAGGGTGGGTGGGAGGGACG
GAGGAGCCTTTCTTTCTTTCTCCAACACCATCGAACCATTCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCGCAGAAACAAGGATGTGACTGG
GCGGTGTCGTCTCGCGGCGTTCTCTCACAGGCGCTGCAGCTCTTCCGCGG
CCATCCTGACCTGCTCCACGGCTTCTCGTACTTCCTTCCTCCTTGTTTGC
AGGTACTTCTTTGCCTTCCTCCCCTCCCTCCCTCCCTCCCCATCCCTCCC
TCCCTCCCCATCCCTCCCTCCCTCCTCCCCTGGTGAAGGCTTTTCGATGC
ATGTGTCTCGTTTGCGTTTGGTCGTAACGCACTCACCTTCCTTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCAGGCAGAGGCGCGCGA
GCACGTGGTGGCGGCAGGTGCTGCCCGGCCTCTGTTTCAGGAGAGGCCTA
GAGCGGACTTCCCTCGAGAGCGGCTGGCCATGGATGAGTGA
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Coding sequence (CDS) from alignment at chr18:823101..824791+

>NO18G02530.1 ID=NO18G02530.1|Name=NO18G02530.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr18:823101..824791+ (Nannochloropsis oceanica)
ATGTGCGAGAAGAAATCCCTCTTGGATTGCTGGACTCCAGCGTTAGGCGC
AGCAGCCTCAGGCACTTACGAACACACGTACGAGGAAAAAGCGGATGAAA
TGGGAGTGACTCCCCCCACCCCCCATCTCTGTACCGTCTTGCCGCACCAT
AATATCGACTGCCAGCAGCACCAGTCATTGTCGTCATCGTTGGCCGTGTG
GAGGGGCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGGA
TGGAGGAGGAGGAAGAGAAGGAGGAGGAGGCTGATTTTCCTAGTGTGGTG
GCCGTGGTTCCGGAATACTTGATGGAGGTGGACGACGAGACAGAGGTCGA
GGACAAAGACGAGGACGAGGACGAGGACGAGGACGAGCAGGCGTCAGAGG
CAGAAGAGCGCCATTCCCTCCGCGAACGGAACAAGGACGACTTCCTGCGG
GCACGAAACTTCATCCTTCGGGTCAAGCACAGGTTTGGTCCCAGAAGGGA
GGGGGAATACAGGCTCTTCCTTAAGGTGCTGCAGACGTTTGTAGAGCAGG
AGAAACAAGGATGTGACTGGGCGGTGTCGTCTCGCGGCGTTCTCTCACAG
GCGCTGCAGCTCTTCCGCGGCCATCCTGACCTGCTCCACGGCTTCTCGTA
CTTCCTTCCTCCTTGTTTGCAGGCAGAGGCGCGCGAGCACGTGGTGGCGG
CAGGTGCTGCCCGGCCTCTGTTTCAGGAGAGGCCTAGAGCGGACTTCCCT
CGAGAGCGGCTGGCCATGGATGAGTGA
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Synonyms
Publications