NO18G02520, NO18G02520 (gene) Nannochloropsis oceanica

Overview
NameNO18G02520
Unique NameNO18G02520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2214
Alignment locationchr18:819667..821880 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:819667..821880 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G02520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL010nonsL010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR094ncniR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007327NSK007327Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02520.1NO18G02520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|675052gene_10899Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02520.1NO18G02520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02520 ID=NO18G02520|Name=NO18G02520|organism=Nannochloropsis oceanica|type=gene|length=2214bp
ATGCCTAAGACCACCACCAAAAAGGCTGCCAAGCCAGTGGCGACAGCGGC
TGTAGAGGCGCCCAGAAAATCAGATCGTCCTCCTGGGAGCAAGGCGCTGC
GTCCGCCTGCGGAACCTGCCGGCCGCTTCACACGCAGTAACACACTCCCT
CTGTCTGCCCCTGCCGATGATGCCCCTGCTACCGCCCCCGCTGCTGTTGC
TTCTGCTGCCGGTGCTGTCGCTACCCCCGCTACAACCGCTGCGACCAGTG
CGCCGGTCTCACGGGGCACCACCACACCTGAACGCAGCAACAGCCGTCGT
GGGAACAAGAAAGTAAACTCTGCCTCCCCTCAAGTCAAGGCCTACCGTCG
CGCCGACGACCAGCTCCGCATCGTAGTGGGCGTGCTCGCAGCGACACAAG
CATGGAAAGATGGGAAGGTCCGACAGCACAACCGACAGATGACGACGAAG
GCCATCTTGTCCATGTACCGGAAGTTGTGCTCGGTGGTGGAAGGGGGTTT
CCATGCCTCTCTGGCAGAGCATGCCAGGCAGTTAAAGGGAAAATTCCGAG
TTTTAATCTCTGAATGCGATGCCTTGTCACTCGCAGCGGTGTTGGAAGAG
ATCTGGGAGAAGGAGGTGGACGACAAGCAGTGCTTGTGGGCCATGAGGAG
GTTGGTGGAGAAGGAGGCGGAGTGGAGGGTGGCCAGGCCGGACCTGAGCA
GGCTGTCGGAGCCAGAGGGTGGGAGAGGGAGGGAGGGAGGAAGGGAGGGC
ATGAAGGTGGTGACGGTGGATGCGAGTGATGAAGAAGCGGAGGCGAAGGA
GACGGGGTACAGCAAGGCCATGGAGCTGGCAAACATTTTATTTGAGGCGA
CGGAGGAGGAGGAAGAGGAGGGGGGGATGGAGGCCTTGACGGCAGAACCC
AAGAAACCTGATGACCTCGTGGAGCAGGTGGCGATCAAGATTCAGGCAGG
AGAAGCCTCGCTCTGGGCCGGATCGGAATGCGATCCCTTCGCGGCCTTGG
ACTCTTTGGGGAGCGTGGGGAAACTCATGCGGAAAGTACTTATGTATGAA
CACGACTTGAAGGACAGTAAGAGGCTGCTCGTCCTCATTCCCGCCCTCGA
GGGGGCGAGGCCGCGGACGTTCACCCGGCACATGGTCAAGGCCAAGgtaa
gagaaggaaggagcgaaggaggcagggaaagaaggaagtcaacgacgccc
tcaaatgcaccatatcactccctccttccctccctccctctgccttcaca
ttaccaatagGAGGTACAATCCATCGCCAGCGGCTTCACCCATGCCGGAT
GGGGGTGGGAACGCCGTGTCTCCCACCTGCTTGCTTACGCTGAGATTAAG
TTCCGCGCCCGCCAGCTGTCTGAGGAAGTGTTGAGGGAGAAGGTGGGGAT
GCTGATGGAGTGGGAGAGCAGGAGGGAGGAGGAGGAAGAAGAGGAGGAGG
AGGAGGGAGGTTCGGCGGGAAAGCTGACGGAAGAAGAGTGGAAGAAGGTG
AAGCGCGTGAGCAAGCTCCTGAAGGGGGCAGGGAAGGGAGGAGGAGATCG
GAACGAGGCAGTCCACAAGATTATGCGGGAGGGGGACGAGGAGGAGGAGA
ACGAGGGGAGCATGGAGGAGGAAGAGGAGGAGGACGACGACGAGGGGATG
TATGAGGAGGAGGGAGGGCAAGGAGGGGTGAGGGGGGGCAGGAGCCCGTT
TGCGGGTGTGGTGGCTGTAGCGGACGCTATTGCTCGACAGCTCGCTAACG
ACTGTAGGGCTGTGGCGGGAGGGGGGATGAGGGGGAGGAAGATCAAGACT
GAGGGACAGAAAGGAGGAGGAGGAGGAGGAGGGGAGGGAGGAGGAGCGGG
AGGGAGGAAGAGAGAATTGATTCCCGTGTTGACTGAGGAGGGGAAGAAGA
GAAGGAAGCCGTTGGGATGGACAGACATGGAGCTGACGCGGCTCTTGCAG
GGGTTGCAGTTATTCGGACACCATCGGTCTTTAATCTGGGTGAAAATTAA
GGGATTTGATGCCCGGGCGTCGAAGCCTGTGCTGGGGGCCCGGAGTCCGT
TAGATGTGAAGGACAAAGCGAGAAACATCGAGAGGAGCGTGAGGAGGGAG
ATGGAGATGCGGGGAATGACGTGGCCGGAGACTTGGTGGAATGAGAGGGC
GTGGGCCAAGCTCGCCTTGAATGACCATGCGCTGTTTTTGTCGCTGCAGG
GAGGAGGGAGGTGA
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protein sequence of NO18G02520.1

>NO18G02520.1-protein ID=NO18G02520.1-protein|Name=NO18G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=700bp
MPKTTTKKAAKPVATAAVEAPRKSDRPPGSKALRPPAEPAGRFTRSNTLP
LSAPADDAPATAPAAVASAAGAVATPATTAATSAPVSRGTTTPERSNSRR
GNKKVNSASPQVKAYRRADDQLRIVVGVLAATQAWKDGKVRQHNRQMTTK
AILSMYRKLCSVVEGGFHASLAEHARQLKGKFRVLISECDALSLAAVLEE
IWEKEVDDKQCLWAMRRLVEKEAEWRVARPDLSRLSEPEGGRGREGGREG
MKVVTVDASDEEAEAKETGYSKAMELANILFEATEEEEEEGGMEALTAEP
KKPDDLVEQVAIKIQAGEASLWAGSECDPFAALDSLGSVGKLMRKVLMYE
HDLKDSKRLLVLIPALEGARPRTFTRHMVKAKEVQSIASGFTHAGWGWER
RVSHLLAYAEIKFRARQLSEEVLREKVGMLMEWESRREEEEEEEEEEGGS
AGKLTEEEWKKVKRVSKLLKGAGKGGGDRNEAVHKIMREGDEEEENEGSM
EEEEEEDDDEGMYEEEGGQGGVRGGRSPFAGVVAVADAIARQLANDCRAV
AGGGMRGRKIKTEGQKGGGGGGGEGGGAGGRKRELIPVLTEEGKKRRKPL
GWTDMELTRLLQGLQLFGHHRSLIWVKIKGFDARASKPVLGARSPLDVKD
KARNIERSVRREMEMRGMTWPETWWNERAWAKLALNDHALFLSLQGGGR*
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Synonyms
Publications