NO18G02520.1, NO18G02520.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G02520.1
Unique Name	NO18G02520.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2100
Alignment location	chr18:819667..821880 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:819667..821880 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO18G02520.1 vs.

BLAST of NO18G02520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G02520	NO18G02520	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02520.1	NO18G02520.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02520.1.cds1	NO18G02520.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02520.1.cds2	NO18G02520.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:819667..821880+
coding sequence from alignment at chr18:819667..821880+

mRNA sequence

>NO18G02520.1 ID=NO18G02520.1|Name=NO18G02520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2100bp
ATGCCTAAGACCACCACCAAAAAGGCTGCCAAGCCAGTGGCGACAGCGGC
TGTAGAGGCGCCCAGAAAATCAGATCGTCCTCCTGGGAGCAAGGCGCTGC
GTCCGCCTGCGGAACCTGCCGGCCGCTTCACACGCAGTAACACACTCCCT
CTGTCTGCCCCTGCCGATGATGCCCCTGCTACCGCCCCCGCTGCTGTTGC
TTCTGCTGCCGGTGCTGTCGCTACCCCCGCTACAACCGCTGCGACCAGTG
CGCCGGTCTCACGGGGCACCACCACACCTGAACGCAGCAACAGCCGTCGT
GGGAACAAGAAAGTAAACTCTGCCTCCCCTCAAGTCAAGGCCTACCGTCG
CGCCGACGACCAGCTCCGCATCGTAGTGGGCGTGCTCGCAGCGACACAAG
CATGGAAAGATGGGAAGGTCCGACAGCACAACCGACAGATGACGACGAAG
GCCATCTTGTCCATGTACCGGAAGTTGTGCTCGGTGGTGGAAGGGGGTTT
CCATGCCTCTCTGGCAGAGCATGCCAGGCAGTTAAAGGGAAAATTCCGAG
TTTTAATCTCTGAATGCGATGCCTTGTCACTCGCAGCGGTGTTGGAAGAG
ATCTGGGAGAAGGAGGTGGACGACAAGCAGTGCTTGTGGGCCATGAGGAG
GTTGGTGGAGAAGGAGGCGGAGTGGAGGGTGGCCAGGCCGGACCTGAGCA
GGCTGTCGGAGCCAGAGGGTGGGAGAGGGAGGGAGGGAGGAAGGGAGGGC
ATGAAGGTGGTGACGGTGGATGCGAGTGATGAAGAAGCGGAGGCGAAGGA
GACGGGGTACAGCAAGGCCATGGAGCTGGCAAACATTTTATTTGAGGCGA
CGGAGGAGGAGGAAGAGGAGGGGGGGATGGAGGCCTTGACGGCAGAACCC
AAGAAACCTGATGACCTCGTGGAGCAGGTGGCGATCAAGATTCAGGCAGG
AGAAGCCTCGCTCTGGGCCGGATCGGAATGCGATCCCTTCGCGGCCTTGG
ACTCTTTGGGGAGCGTGGGGAAACTCATGCGGAAAGTACTTATGTATGAA
CACGACTTGAAGGACAGTAAGAGGCTGCTCGTCCTCATTCCCGCCCTCGA
GGGGGCGAGGCCGCGGACGTTCACCCGGCACATGGTCAAGGCCAAGGAGG
TACAATCCATCGCCAGCGGCTTCACCCATGCCGGATGGGGGTGGGAACGC
CGTGTCTCCCACCTGCTTGCTTACGCTGAGATTAAGTTCCGCGCCCGCCA
GCTGTCTGAGGAAGTGTTGAGGGAGAAGGTGGGGATGCTGATGGAGTGGG
AGAGCAGGAGGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGGAGGTTCG
GCGGGAAAGCTGACGGAAGAAGAGTGGAAGAAGGTGAAGCGCGTGAGCAA
GCTCCTGAAGGGGGCAGGGAAGGGAGGAGGAGATCGGAACGAGGCAGTCC
ACAAGATTATGCGGGAGGGGGACGAGGAGGAGGAGAACGAGGGGAGCATG
GAGGAGGAAGAGGAGGAGGACGACGACGAGGGGATGTATGAGGAGGAGGG
AGGGCAAGGAGGGGTGAGGGGGGGCAGGAGCCCGTTTGCGGGTGTGGTGG
CTGTAGCGGACGCTATTGCTCGACAGCTCGCTAACGACTGTAGGGCTGTG
GCGGGAGGGGGGATGAGGGGGAGGAAGATCAAGACTGAGGGACAGAAAGG
AGGAGGAGGAGGAGGAGGGGAGGGAGGAGGAGCGGGAGGGAGGAAGAGAG
AATTGATTCCCGTGTTGACTGAGGAGGGGAAGAAGAGAAGGAAGCCGTTG
GGATGGACAGACATGGAGCTGACGCGGCTCTTGCAGGGGTTGCAGTTATT
CGGACACCATCGGTCTTTAATCTGGGTGAAAATTAAGGGATTTGATGCCC
GGGCGTCGAAGCCTGTGCTGGGGGCCCGGAGTCCGTTAGATGTGAAGGAC
AAAGCGAGAAACATCGAGAGGAGCGTGAGGAGGGAGATGGAGATGCGGGG
AATGACGTGGCCGGAGACTTGGTGGAATGAGAGGGCGTGGGCCAAGCTCG
CCTTGAATGACCATGCGCTGTTTTTGTCGCTGCAGGGAGGAGGGAGGTGA

protein sequence of NO18G02520.1

>NO18G02520.1-protein ID=NO18G02520.1-protein|Name=NO18G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=700bp
MPKTTTKKAAKPVATAAVEAPRKSDRPPGSKALRPPAEPAGRFTRSNTLP
LSAPADDAPATAPAAVASAAGAVATPATTAATSAPVSRGTTTPERSNSRR
GNKKVNSASPQVKAYRRADDQLRIVVGVLAATQAWKDGKVRQHNRQMTTK
AILSMYRKLCSVVEGGFHASLAEHARQLKGKFRVLISECDALSLAAVLEE
IWEKEVDDKQCLWAMRRLVEKEAEWRVARPDLSRLSEPEGGRGREGGREG
MKVVTVDASDEEAEAKETGYSKAMELANILFEATEEEEEEGGMEALTAEP
KKPDDLVEQVAIKIQAGEASLWAGSECDPFAALDSLGSVGKLMRKVLMYE
HDLKDSKRLLVLIPALEGARPRTFTRHMVKAKEVQSIASGFTHAGWGWER
RVSHLLAYAEIKFRARQLSEEVLREKVGMLMEWESRREEEEEEEEEEGGS
AGKLTEEEWKKVKRVSKLLKGAGKGGGDRNEAVHKIMREGDEEEENEGSM
EEEEEEDDDEGMYEEEGGQGGVRGGRSPFAGVVAVADAIARQLANDCRAV
AGGGMRGRKIKTEGQKGGGGGGGEGGGAGGRKRELIPVLTEEGKKRRKPL
GWTDMELTRLLQGLQLFGHHRSLIWVKIKGFDARASKPVLGARSPLDVKD
KARNIERSVRREMEMRGMTWPETWWNERAWAKLALNDHALFLSLQGGGR*

mRNA from alignment at chr18:819667..821880+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G02520.1 ID=NO18G02520.1|Name=NO18G02520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp|location=Sequence derived from alignment at chr18:819667..821880+ (Nannochloropsis oceanica)
ATGCCTAAGACCACCACCAAAAAGGCTGCCAAGCCAGTGGCGACAGCGGC
TGTAGAGGCGCCCAGAAAATCAGATCGTCCTCCTGGGAGCAAGGCGCTGC
GTCCGCCTGCGGAACCTGCCGGCCGCTTCACACGCAGTAACACACTCCCT
CTGTCTGCCCCTGCCGATGATGCCCCTGCTACCGCCCCCGCTGCTGTTGC
TTCTGCTGCCGGTGCTGTCGCTACCCCCGCTACAACCGCTGCGACCAGTG
CGCCGGTCTCACGGGGCACCACCACACCTGAACGCAGCAACAGCCGTCGT
GGGAACAAGAAAGTAAACTCTGCCTCCCCTCAAGTCAAGGCCTACCGTCG
CGCCGACGACCAGCTCCGCATCGTAGTGGGCGTGCTCGCAGCGACACAAG
CATGGAAAGATGGGAAGGTCCGACAGCACAACCGACAGATGACGACGAAG
GCCATCTTGTCCATGTACCGGAAGTTGTGCTCGGTGGTGGAAGGGGGTTT
CCATGCCTCTCTGGCAGAGCATGCCAGGCAGTTAAAGGGAAAATTCCGAG
TTTTAATCTCTGAATGCGATGCCTTGTCACTCGCAGCGGTGTTGGAAGAG
ATCTGGGAGAAGGAGGTGGACGACAAGCAGTGCTTGTGGGCCATGAGGAG
GTTGGTGGAGAAGGAGGCGGAGTGGAGGGTGGCCAGGCCGGACCTGAGCA
GGCTGTCGGAGCCAGAGGGTGGGAGAGGGAGGGAGGGAGGAAGGGAGGGC
ATGAAGGTGGTGACGGTGGATGCGAGTGATGAAGAAGCGGAGGCGAAGGA
GACGGGGTACAGCAAGGCCATGGAGCTGGCAAACATTTTATTTGAGGCGA
CGGAGGAGGAGGAAGAGGAGGGGGGGATGGAGGCCTTGACGGCAGAACCC
AAGAAACCTGATGACCTCGTGGAGCAGGTGGCGATCAAGATTCAGGCAGG
AGAAGCCTCGCTCTGGGCCGGATCGGAATGCGATCCCTTCGCGGCCTTGG
ACTCTTTGGGGAGCGTGGGGAAACTCATGCGGAAAGTACTTATGTATGAA
CACGACTTGAAGGACAGTAAGAGGCTGCTCGTCCTCATTCCCGCCCTCGA
GGGGGCGAGGCCGCGGACGTTCACCCGGCACATGGTCAAGGCCAAGGTAA
GAGAAGGAAGGAGCGAAGGAGGCAGGGAAAGAAGGAAGTCAACGACGCCC
TCAAATGCACCATATCACTCCCTCCTTCCCTCCCTCCCTCTGCCTTCACA
TTACCAATAGGAGGTACAATCCATCGCCAGCGGCTTCACCCATGCCGGAT
GGGGGTGGGAACGCCGTGTCTCCCACCTGCTTGCTTACGCTGAGATTAAG
TTCCGCGCCCGCCAGCTGTCTGAGGAAGTGTTGAGGGAGAAGGTGGGGAT
GCTGATGGAGTGGGAGAGCAGGAGGGAGGAGGAGGAAGAAGAGGAGGAGG
AGGAGGGAGGTTCGGCGGGAAAGCTGACGGAAGAAGAGTGGAAGAAGGTG
AAGCGCGTGAGCAAGCTCCTGAAGGGGGCAGGGAAGGGAGGAGGAGATCG
GAACGAGGCAGTCCACAAGATTATGCGGGAGGGGGACGAGGAGGAGGAGA
ACGAGGGGAGCATGGAGGAGGAAGAGGAGGAGGACGACGACGAGGGGATG
TATGAGGAGGAGGGAGGGCAAGGAGGGGTGAGGGGGGGCAGGAGCCCGTT
TGCGGGTGTGGTGGCTGTAGCGGACGCTATTGCTCGACAGCTCGCTAACG
ACTGTAGGGCTGTGGCGGGAGGGGGGATGAGGGGGAGGAAGATCAAGACT
GAGGGACAGAAAGGAGGAGGAGGAGGAGGAGGGGAGGGAGGAGGAGCGGG
AGGGAGGAAGAGAGAATTGATTCCCGTGTTGACTGAGGAGGGGAAGAAGA
GAAGGAAGCCGTTGGGATGGACAGACATGGAGCTGACGCGGCTCTTGCAG
GGGTTGCAGTTATTCGGACACCATCGGTCTTTAATCTGGGTGAAAATTAA
GGGATTTGATGCCCGGGCGTCGAAGCCTGTGCTGGGGGCCCGGAGTCCGT
TAGATGTGAAGGACAAAGCGAGAAACATCGAGAGGAGCGTGAGGAGGGAG
ATGGAGATGCGGGGAATGACGTGGCCGGAGACTTGGTGGAATGAGAGGGC
GTGGGCCAAGCTCGCCTTGAATGACCATGCGCTGTTTTTGTCGCTGCAGG
GAGGAGGGAGGTGA

Coding sequence (CDS) from alignment at chr18:819667..821880+

>NO18G02520.1 ID=NO18G02520.1|Name=NO18G02520.1|organism=Nannochloropsis oceanica|type=CDS|length=2100bp|location=Sequence derived from alignment at chr18:819667..821880+ (Nannochloropsis oceanica)
ATGCCTAAGACCACCACCAAAAAGGCTGCCAAGCCAGTGGCGACAGCGGC
TGTAGAGGCGCCCAGAAAATCAGATCGTCCTCCTGGGAGCAAGGCGCTGC
GTCCGCCTGCGGAACCTGCCGGCCGCTTCACACGCAGTAACACACTCCCT
CTGTCTGCCCCTGCCGATGATGCCCCTGCTACCGCCCCCGCTGCTGTTGC
TTCTGCTGCCGGTGCTGTCGCTACCCCCGCTACAACCGCTGCGACCAGTG
CGCCGGTCTCACGGGGCACCACCACACCTGAACGCAGCAACAGCCGTCGT
GGGAACAAGAAAGTAAACTCTGCCTCCCCTCAAGTCAAGGCCTACCGTCG
CGCCGACGACCAGCTCCGCATCGTAGTGGGCGTGCTCGCAGCGACACAAG
CATGGAAAGATGGGAAGGTCCGACAGCACAACCGACAGATGACGACGAAG
GCCATCTTGTCCATGTACCGGAAGTTGTGCTCGGTGGTGGAAGGGGGTTT
CCATGCCTCTCTGGCAGAGCATGCCAGGCAGTTAAAGGGAAAATTCCGAG
TTTTAATCTCTGAATGCGATGCCTTGTCACTCGCAGCGGTGTTGGAAGAG
ATCTGGGAGAAGGAGGTGGACGACAAGCAGTGCTTGTGGGCCATGAGGAG
GTTGGTGGAGAAGGAGGCGGAGTGGAGGGTGGCCAGGCCGGACCTGAGCA
GGCTGTCGGAGCCAGAGGGTGGGAGAGGGAGGGAGGGAGGAAGGGAGGGC
ATGAAGGTGGTGACGGTGGATGCGAGTGATGAAGAAGCGGAGGCGAAGGA
GACGGGGTACAGCAAGGCCATGGAGCTGGCAAACATTTTATTTGAGGCGA
CGGAGGAGGAGGAAGAGGAGGGGGGGATGGAGGCCTTGACGGCAGAACCC
AAGAAACCTGATGACCTCGTGGAGCAGGTGGCGATCAAGATTCAGGCAGG
AGAAGCCTCGCTCTGGGCCGGATCGGAATGCGATCCCTTCGCGGCCTTGG
ACTCTTTGGGGAGCGTGGGGAAACTCATGCGGAAAGTACTTATGTATGAA
CACGACTTGAAGGACAGTAAGAGGCTGCTCGTCCTCATTCCCGCCCTCGA
GGGGGCGAGGCCGCGGACGTTCACCCGGCACATGGTCAAGGCCAAGGAGG
TACAATCCATCGCCAGCGGCTTCACCCATGCCGGATGGGGGTGGGAACGC
CGTGTCTCCCACCTGCTTGCTTACGCTGAGATTAAGTTCCGCGCCCGCCA
GCTGTCTGAGGAAGTGTTGAGGGAGAAGGTGGGGATGCTGATGGAGTGGG
AGAGCAGGAGGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGGAGGTTCG
GCGGGAAAGCTGACGGAAGAAGAGTGGAAGAAGGTGAAGCGCGTGAGCAA
GCTCCTGAAGGGGGCAGGGAAGGGAGGAGGAGATCGGAACGAGGCAGTCC
ACAAGATTATGCGGGAGGGGGACGAGGAGGAGGAGAACGAGGGGAGCATG
GAGGAGGAAGAGGAGGAGGACGACGACGAGGGGATGTATGAGGAGGAGGG
AGGGCAAGGAGGGGTGAGGGGGGGCAGGAGCCCGTTTGCGGGTGTGGTGG
CTGTAGCGGACGCTATTGCTCGACAGCTCGCTAACGACTGTAGGGCTGTG
GCGGGAGGGGGGATGAGGGGGAGGAAGATCAAGACTGAGGGACAGAAAGG
AGGAGGAGGAGGAGGAGGGGAGGGAGGAGGAGCGGGAGGGAGGAAGAGAG
AATTGATTCCCGTGTTGACTGAGGAGGGGAAGAAGAGAAGGAAGCCGTTG
GGATGGACAGACATGGAGCTGACGCGGCTCTTGCAGGGGTTGCAGTTATT
CGGACACCATCGGTCTTTAATCTGGGTGAAAATTAAGGGATTTGATGCCC
GGGCGTCGAAGCCTGTGCTGGGGGCCCGGAGTCCGTTAGATGTGAAGGAC
AAAGCGAGAAACATCGAGAGGAGCGTGAGGAGGGAGATGGAGATGCGGGG
AATGACGTGGCCGGAGACTTGGTGGAATGAGAGGGCGTGGGCCAAGCTCG
CCTTGAATGACCATGCGCTGTTTTTGTCGCTGCAGGGAGGAGGGAGGTGA

Synonyms

Publications