NO18G02460, NO18G02460 (gene) Nannochloropsis oceanica

Overview
NameNO18G02460
Unique NameNO18G02460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length856
Alignment locationchr18:799351..800206 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:799351..800206 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035920YhbY_like_sf
IPR001890RNA-binding_CRM
Homology
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BLAST of NO18G02460 vs. NCBI_GenBank
Match: XP_005855020.1 (hypothetical protein NGA_2010200, partial [Nannochloropsis gaditana CCMP526] >EKU21340.1 hypothetical protein NGA_2010200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 162.9 bits (411), Expect = 1.100e-36
Identity = 92/141 (65.25%), Postives = 110/141 (78.01%), Query Frame = 0 
Query:   74 GASASDNVDDLEDRPPRV---PPPKPEPTPIQYNSPLFPPKVLDSLWNEQRKPLLRLGMKGIMPSHLNSLRELLDAHNVVRIKVNGPVSDGLQAMAEQALLKAGTLPNASQP-MGVLLRVKGKEFLVGRTDKMEALRKKML 211
            GASA DN ++  +RP  +     P P  T +QYNSPLFPP+VLDSLWN+QRKPLLRLG KG++ SHLNSLRELLDAHNVVR+KVNG  +  +Q +AE AL  A  + + S+P +GVLLRVKGKEFLVGR DKMEALRKK+L
Sbjct:   98 GASALDNTEN-NERPSTMDSSSEPLPGSTIVQYNSPLFPPQVLDSLWNQQRKPLLRLGAKGVLKSHLNSLRELLDAHNVVRVKVNGLSNTDIQGLAENALRMA--VEHDSEPALGVLLRVKGKEFLVGRPDKMEALRKKLL 235
The following BLAST results are available for this feature:
BLAST of NO18G02460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855020.11.100e-3665.25hypothetical protein NGA_2010200, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02460.1NO18G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|226199gene_8946Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02460.1NO18G02460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02460 ID=NO18G02460|Name=NO18G02460|organism=Nannochloropsis oceanica|type=gene|length=856bp
ACAGGTACAAGAGCCCTTCCCCTCCCTTTCACTTTCGGGCGGCCCAGCCA
ACTTCAACGCGAATATCATCATGACTCTCATCGCCACCACCACCACCAGC
CTCCTCCTCTTCCTCCCCCTTATCGTCGTTATCGTCCCGGTGCACGCCTT
TCTCCCCCTTCCCGTACAGTCCGGCTGCAGGAGCAGGAGTAGAAGAAGCG
GTCTGGCTGCCGTCGCTTCTCCTTCCAACCCCCCCACCACAACAACCGCC
ACCACCACTACCGGCCGGCTCTCCGCAACCCTCCTCCGCGGTGCCTCCGC
CTCAGACAACGTGGACGACCTCGAAGACAGACCTCCTCGCGTCCCGCCTC
CTAAACCCGAGCCTACCCCCATACAGTACAACTCGCCGCTCTTCCCGCCA
AAGGTCTTGGACTCTCTCTGGAACGAGCAACGCAAGCCTCTTCTCCGCTT
GGGGATGAAAGGTATTATGCCTAGCCACCTCAACTCCCTCCGTGAACTCC
TCGACGCGCACAATGTAGTCCGCATCAAAGTCAATGGGCCCGTAAGCGAC
GGTCTGCAGGCAATGGCGGAGCAAGCGTTACTAAAGGCAGGCACGCTTCC
TAACGCCAGCCAACCGATGGGTGTCTTGTTGCGTGTTAAGGGAAAAGAGT
TTTTGGTCGGCCGAACGGACAAAATGGAGGCCTTGCGGAAAAAGATGCTC
CTACCCGAGGTGTCGTTGCCAGGAGGAGGAAATGGTGGGCAAGAGTAGAG
AGATGGGTTGAGCTTGGATGGGTGACGAAACGGGCTGTGAACTCACAGGA
AAATAAAGTGCACATATCCTTTTTTGGCTTTTTCCTTTGTAGTTTCGACC
GAGTGC
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protein sequence of NO18G02460.1

>NO18G02460.1-protein ID=NO18G02460.1-protein|Name=NO18G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MTLIATTTTSLLLFLPLIVVIVPVHAFLPLPVQSGCRSRSRRSGLAAVAS
PSNPPTTTTATTTTGRLSATLLRGASASDNVDDLEDRPPRVPPPKPEPTP
IQYNSPLFPPKVLDSLWNEQRKPLLRLGMKGIMPSHLNSLRELLDAHNVV
RIKVNGPVSDGLQAMAEQALLKAGTLPNASQPMGVLLRVKGKEFLVGRTD
KMEALRKKMLLPEVSLPGGGNGGQE*
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Synonyms
Publications