NO18G02460.1, NO18G02460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02460.1
Unique NameNO18G02460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length856
Alignment locationchr18:799351..800206 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:799351..800206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02460.1 vs.
Match: XP_005855020.1 (hypothetical protein NGA_2010200, partial [Nannochloropsis gaditana CCMP526]; EKU21340.1 hypothetical protein NGA_2010200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 153.7 bits (387), Expect = 6.900e-34
Identity = 108/220 (49.09%), Postives = 140/220 (63.64%), Query Frame = 0 
Query:    2 TLIATTTTSLLLFLPLIVVIVPVHAFL-------PLPVQSGCRSRSRRSGLAAVASPSNPPTTTTATTTTGRLSATLLRGASASDNVDDLEDRPPRVPP---PKPEPTPIQYNSPLFPPKVLDSLWNEQRKPLLRLGMKGIMPSHLNSLRELLDAHNVVRIKVNGPVSDGLQAMAEQALLKAGTLPNASQP-MGVLLRVKGKEFLVGRTDKMEALRKKML 211
            T I T  T +L    ++++++P +AF+       P  + SG  +    +   A+ SP + P +                GASA DN ++ E RP  +     P P  T +QYNSPLFPP+VLDSLWN+QRKPLLRLG KG++ SHLNSLRELLDAHNVVR+KVNG  +  +Q +AE AL  A  + + S+P +GVLLRVKGKEFLVGR DKMEALRKK+L
Sbjct:   36 TSIYTIRTGIL---SMLLLLLPANAFIHTSMHVSPRRLTSGGSNVCVPASDHAMLSPWSRPRSQY--------------GASALDNTENNE-RPSTMDSSSEPLPGSTIVQYNSPLFPPQVLDSLWNQQRKPLLRLGAKGVLKSHLNSLRELLDAHNVVRVKVNGLSNTDIQGLAENALRMA--VEHDSEPALGVLLRVKGKEFLVGRPDKMEALRKKLL 235
The following BLAST results are available for this feature:
BLAST of NO18G02460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855020.16.900e-3449.09hypothetical protein NGA_2010200, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02460NO18G02460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02460.1NO18G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02460.1.cds1NO18G02460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02460.1 ID=NO18G02460.1|Name=NO18G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=856bp
ACAGGTACAAGAGCCCTTCCCCTCCCTTTCACTTTCGGGCGGCCCAGCCA
ACTTCAACGCGAATATCATCATGACTCTCATCGCCACCACCACCACCAGC
CTCCTCCTCTTCCTCCCCCTTATCGTCGTTATCGTCCCGGTGCACGCCTT
TCTCCCCCTTCCCGTACAGTCCGGCTGCAGGAGCAGGAGTAGAAGAAGCG
GTCTGGCTGCCGTCGCTTCTCCTTCCAACCCCCCCACCACAACAACCGCC
ACCACCACTACCGGCCGGCTCTCCGCAACCCTCCTCCGCGGTGCCTCCGC
CTCAGACAACGTGGACGACCTCGAAGACAGACCTCCTCGCGTCCCGCCTC
CTAAACCCGAGCCTACCCCCATACAGTACAACTCGCCGCTCTTCCCGCCA
AAGGTCTTGGACTCTCTCTGGAACGAGCAACGCAAGCCTCTTCTCCGCTT
GGGGATGAAAGGTATTATGCCTAGCCACCTCAACTCCCTCCGTGAACTCC
TCGACGCGCACAATGTAGTCCGCATCAAAGTCAATGGGCCCGTAAGCGAC
GGTCTGCAGGCAATGGCGGAGCAAGCGTTACTAAAGGCAGGCACGCTTCC
TAACGCCAGCCAACCGATGGGTGTCTTGTTGCGTGTTAAGGGAAAAGAGT
TTTTGGTCGGCCGAACGGACAAAATGGAGGCCTTGCGGAAAAAGATGCTC
CTACCCGAGGTGTCGTTGCCAGGAGGAGGAAATGGTGGGCAAGAGTAGAG
AGATGGGTTGAGCTTGGATGGGTGACGAAACGGGCTGTGAACTCACAGGA
AAATAAAGTGCACATATCCTTTTTTGGCTTTTTCCTTTGTAGTTTCGACC
GAGTGC
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protein sequence of NO18G02460.1

>NO18G02460.1-protein ID=NO18G02460.1-protein|Name=NO18G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MTLIATTTTSLLLFLPLIVVIVPVHAFLPLPVQSGCRSRSRRSGLAAVAS
PSNPPTTTTATTTTGRLSATLLRGASASDNVDDLEDRPPRVPPPKPEPTP
IQYNSPLFPPKVLDSLWNEQRKPLLRLGMKGIMPSHLNSLRELLDAHNVV
RIKVNGPVSDGLQAMAEQALLKAGTLPNASQPMGVLLRVKGKEFLVGRTD
KMEALRKKMLLPEVSLPGGGNGGQE*
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mRNA from alignment at chr18:799351..800206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02460.1 ID=NO18G02460.1|Name=NO18G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=856bp|location=Sequence derived from alignment at chr18:799351..800206+ (Nannochloropsis oceanica)
ACAGGTACAAGAGCCCTTCCCCTCCCTTTCACTTTCGGGCGGCCCAGCCA
ACTTCAACGCGAATATCATCATGACTCTCATCGCCACCACCACCACCAGC
CTCCTCCTCTTCCTCCCCCTTATCGTCGTTATCGTCCCGGTGCACGCCTT
TCTCCCCCTTCCCGTACAGTCCGGCTGCAGGAGCAGGAGTAGAAGAAGCG
GTCTGGCTGCCGTCGCTTCTCCTTCCAACCCCCCCACCACAACAACCGCC
ACCACCACTACCGGCCGGCTCTCCGCAACCCTCCTCCGCGGTGCCTCCGC
CTCAGACAACGTGGACGACCTCGAAGACAGACCTCCTCGCGTCCCGCCTC
CTAAACCCGAGCCTACCCCCATACAGTACAACTCGCCGCTCTTCCCGCCA
AAGGTCTTGGACTCTCTCTGGAACGAGCAACGCAAGCCTCTTCTCCGCTT
GGGGATGAAAGGTATTATGCCTAGCCACCTCAACTCCCTCCGTGAACTCC
TCGACGCGCACAATGTAGTCCGCATCAAAGTCAATGGGCCCGTAAGCGAC
GGTCTGCAGGCAATGGCGGAGCAAGCGTTACTAAAGGCAGGCACGCTTCC
TAACGCCAGCCAACCGATGGGTGTCTTGTTGCGTGTTAAGGGAAAAGAGT
TTTTGGTCGGCCGAACGGACAAAATGGAGGCCTTGCGGAAAAAGATGCTC
CTACCCGAGGTGTCGTTGCCAGGAGGAGGAAATGGTGGGCAAGAGTAGAG
AGATGGGTTGAGCTTGGATGGGTGACGAAACGGGCTGTGAACTCACAGGA
AAATAAAGTGCACATATCCTTTTTTGGCTTTTTCCTTTGTAGTTTCGACC
GAGTGC
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Coding sequence (CDS) from alignment at chr18:799351..800206+

>NO18G02460.1 ID=NO18G02460.1|Name=NO18G02460.1|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at chr18:799351..800206+ (Nannochloropsis oceanica)
ATGACTCTCATCGCCACCACCACCACCAGCCTCCTCCTCTTCCTCCCCCT
TATCGTCGTTATCGTCCCGGTGCACGCCTTTCTCCCCCTTCCCGTACAGT
CCGGCTGCAGGAGCAGGAGTAGAAGAAGCGGTCTGGCTGCCGTCGCTTCT
CCTTCCAACCCCCCCACCACAACAACCGCCACCACCACTACCGGCCGGCT
CTCCGCAACCCTCCTCCGCGGTGCCTCCGCCTCAGACAACGTGGACGACC
TCGAAGACAGACCTCCTCGCGTCCCGCCTCCTAAACCCGAGCCTACCCCC
ATACAGTACAACTCGCCGCTCTTCCCGCCAAAGGTCTTGGACTCTCTCTG
GAACGAGCAACGCAAGCCTCTTCTCCGCTTGGGGATGAAAGGTATTATGC
CTAGCCACCTCAACTCCCTCCGTGAACTCCTCGACGCGCACAATGTAGTC
CGCATCAAAGTCAATGGGCCCGTAAGCGACGGTCTGCAGGCAATGGCGGA
GCAAGCGTTACTAAAGGCAGGCACGCTTCCTAACGCCAGCCAACCGATGG
GTGTCTTGTTGCGTGTTAAGGGAAAAGAGTTTTTGGTCGGCCGAACGGAC
AAAATGGAGGCCTTGCGGAAAAAGATGCTCCTACCCGAGGTGTCGTTGCC
AGGAGGAGGAAATGGTGGGCAAGAGTAG
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Synonyms
Publications