NO18G02420, NO18G02420 (gene) Nannochloropsis oceanica

Overview
NameNO18G02420
Unique NameNO18G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2667
Alignment locationchr18:786321..788987 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:786321..788987 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G02420 vs. NCBI_GenBank
Match: EWM23450.1 (hypothetical protein Naga_100945g1 [Nannochloropsis gaditana])

HSP 1 Score: 105.9 bits (263), Expect = 2.100e-19
Identity = 49/63 (77.78%), Postives = 58/63 (92.06%), Query Frame = 0 
Query:  156 DIVMVDMTEDGKPPRVTIQASYSATDDLAPVITTLWKGIVLLDREGTSRRAAQNTILSVGALG 219
            D+VMVDMTEDG+PPRVT++ASY+  DDL PVI+TLW+GIVLLDREGTSRR+AQ TILSVG +G
Sbjct:  126 DVVMVDMTEDGEPPRVTVKASYNVNDDLGPVISTLWRGIVLLDREGTSRRSAQMTILSVGCVG 188
The following BLAST results are available for this feature:
BLAST of NO18G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23450.12.100e-1977.78hypothetical protein Naga_100945g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02420.1NO18G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604585gene_8942Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100945g1gene7005Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02420.1NO18G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02420 ID=NO18G02420|Name=NO18G02420|organism=Nannochloropsis oceanica|type=gene|length=2667bp
ACTGGTGTATGTTGAGTGGGCTGTGCAGAAGATGAGGTGTGCGCTATGAT
TAGACAGAAGCTACTGATTTATGCATGCAAAACTAGTTGACCCGTGGCAC
TTGTGTTCCACGCAGTCGATGTCGCCTGCTTGTAAGCTTGCTGACAACTA
GAACATATGGTTCTGACCAAAACTGATGCCTCCGCGGCGCTGCTTGTGGG
GGCGAGGGCAAAAGATGGCCATGTGCTCCTTCTTCGCTTCGAACCGCTGG
GAACAAAGAGTCTCAGGGAGAGAAGGCTGTAGAGTCTCAGACAAAAACTC
GTAAGTCGCTGGTCTCTCTTGTAGGAATATGGACAGAAACAAAATTATCG
CACATAAGTCTACCCGCGCGCATGCTTTGGGACCAGCCATGTCAATGTTG
TGTTGGCTTGGACAAATTTAAGTTAAGGAGGCTGGGAGGAGGAGGAGCGA
GCGAAGGAACACAGAAAATGCGCGTGCTGTGTCGGGATGAGTGAATGACA
CTTGGACAAAGCGAAAGCAAAGCCCATGCACTTCAGATACAACCAATGAA
CAAACATGTAATCGACCACATCGTCATGCGTACGATGATTTGCCTAGAAA
GTGCTGCCCATTTCCGTCTTCTTGAGTGATTTTGGGCGAATGCCGAAAGC
CGAAACCCCATCGGCGAGTTGACACTCTACTTCTGTGGACCGATCGAAAT
GCACCTTGCGCGACCTGCGGACAACGAGAATATTACCAGTTTGTGTTCAG
GTTCTTCTTACGCAATTGTATGAGTCCCAAGGTAGAGTGGGGCCAGTCCC
TCGACAGATTGACGTGTCTCTCAGCCTCCCCATCCGTCACAAAGCAACGT
CAGCGGCGACACCACCAAGCGTTCTCATGCTTCCCCCACTTTGTCTTTGG
ACGCAGATAGGGATGAGAAACACACGTCAACTCTCACATCACTATTCCGA
TTTCTCCCGCAACAGCACGTGCCTGTAGCCGCCGCGCTCGTGCCTCTAAT
GCCTTTCCCCCGCGCCTCCTTCATTTCTCTCACCCTGAGGCTCACTCGCA
AATATGCCCCCTTTAACTCTACCGCATCACACTCACATAAACAAGCCACA
TCGCCCTTTTTCGTCACAATGCCTCGCCTCGTCCCGTGGAGCGGCACCCT
TCTTCCTGTTCTGAGCGTCCTTGCTGTGTTATTTTTTTCCTTGCCAGTGG
CACGGGCATGGCGCACCCCGCTGTCCTCGAATCACTTAAGCCTCAGCACC
TTTGCTAGCAGCAGGAGAAGAGCAGCAGCTGCAGCAGCCACAACAACGAC
AATAACAACGTCCTCTACTTTCCGGCAAATGCATCCCTGGACGCGATGTT
TCGCCGTCTTTCCGGACGACGACGAACTGCGGAGTTCCAACGAGGGCCGG
GGCAGTGGAGGTGGTGGAGGAGGTGGAGGGCAAGGACCTGATGAGGAGCA
ACGCTCGGGGTCGGACATAGTTATGGTGGACATGACCGAGgtaaggaagg
gagggagggagaaagggaggaagagagtgggggaaggaggactgagtctt
cgtgccgcttgacaaacagagaagctggccattggtttaccctatcctcc
ttccctccttccttcccttcctcccttcctccttccccccctccctcggt
agGACGGGAAGCCCCCCCGTGTGACGATCCAGGCCTCGTACAGCGCCACG
GACGATCTTGCGCCGGTCATCACCACTTTGTGGAAAGGCATCGTGTTACT
CGACAGAGAAGGCACGTCCAGGCGGGCGGCGCAGAATACGATCCTGTCCG
TAGGgtaagttgaaggggagaccggacggagggaatgagaaagggaggga
gggaggacacaaagccaacagatgtatttcatcttcactcctcatccctc
ttccgcccctcggtccctccctcctgccactcgggacagCGCGCTCGGCC
TGGGCTCCCTCCTCCTCTTCCTCCTCCTCCTTCCCGCGGGCTTTATCCAC
GGTCCAACGGACTCGGCGACCGTTAATTCCCGCCCAACGTTCAATACGCG
CACCTACATCAACCCCGATCAGgtaattccctccctccctccctccctcc
ctccctgggctcgacgattccaccaggatgcctcccgtccaatgttccct
ccctccctccctcccaccctccttcccaccttccctcccgccctacttcc
ctccttcctctccctccttcacccgtccctacttccctccattttgaccc
tccccccttctccgtctctccctcctttgcttcatgcttttagaggggaa
agtgaagaatatctcaccagccggctctctcaccccgaacctccctcctt
ccttccctccccccctctccctcgttccctccctcactgacagGTGCTTG
AGGAAGATTTCTACCGCGCGGGCGGAGTGCGTCTGTGGGAGGATGAGGTT
TATGACGACGAAGATTTCTGAGGAGGGGGAGGGAGGGAAGGAAGGAAGGA
GGGGACGGACGAAAGGAGGGGGGGTTAGGGTGTACAGTGAAGGAGGGGGA
GGCAGGCGGACAAGAGGACCTGACGTTAAAGAGGGATTGAGAGTTTCGAC
CGTGAACCGAGGAGGGATGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGG
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protein sequence of NO18G02420.1

>NO18G02420.1-protein ID=NO18G02420.1-protein|Name=NO18G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MPFPRASFISLTLRLTRKYAPFNSTASHSHKQATSPFFVTMPRLVPWSGT
LLPVLSVLAVLFFSLPVARAWRTPLSSNHLSLSTFASSRRRAAAAAATTT
TITTSSTFRQMHPWTRCFAVFPDDDELRSSNEGRGSGGGGGGGGQGPDEE
QRSGSDIVMVDMTEDGKPPRVTIQASYSATDDLAPVITTLWKGIVLLDRE
GTSRRAAQNTILSVGALGLGSLLLFLLLLPAGFIHGPTDSATVNSRPTFN
TRTYINPDQVLEEDFYRAGGVRLWEDEVYDDEDF*
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Synonyms
Publications