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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr18 | genome | chr18:786321..788987 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G02420.1 vs.
Match: EWM23450.1 (hypothetical protein Naga_100945g1 [Nannochloropsis gaditana]) HSP 1 Score: 117.5 bits (293), Expect = 6.900e-23 Identity = 84/179 (46.93%), Postives = 106/179 (59.22%), Query Frame = 0
Query: 50 TLLPVLSVLAVLFFSLPVA-RAWRTPLSSNHLSLSTFASSRRRAAAAAATTTTITTSSTFRQMHPW-TRCFAVFPDDDE--------LRSSNEGRGSGGGGGGGGQGPDEEQRSGSDIVMVDMTEDGKPPRVTIQASYSATDDLAPVITTLWKGIVLLDREGTSRRAAQNTILSVGALG 219
TLLP V A+L L + W P + L+ R + +T+ T+ R P TR A FP+D++ LR S + G+GGGGG G GP Q D+VMVDMTEDG+PPRVT++ASY+ DDL PVI+TLW+GIVLLDREGTSRR+AQ TILSVG +G
Sbjct: 13 TLLPSFYVAALLLNVLMLTIEGWHVPTVRSSSLLTN--KIRSHGSIFPFCSTSSTSPVCCRPPRPTLTRLHANFPEDEQEEEEWPGSLRRSGQEGGNGGGGGEGPNGP-RGQDVQPDVVMVDMTEDGEPPRVTVKASYNVNDDLGPVISTLWRGIVLLDREGTSRRSAQMTILSVGCVG 188
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G02420.1 ID=NO18G02420.1|Name=NO18G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp
ACTGGTGTATGTTGAGTGGGCTGTGCAGAAGATGAGGTGTGCGCTATGAT
TAGACAGAAGCTACTGATTTATGCATGCAAAACTAGTTGACCCGTGGCAC
TTGTGTTCCACGCAGTCGATGTCGCCTGCTTGTAAGCTTGCTGACAACTA
GAACATATGGTTCTGACCAAAACTGATGCCTCCGCGGCGCTGCTTGTGGG
GGCGAGGGCAAAAGATGGCCATGTGCTCCTTCTTCGCTTCGAACCGCTGG
GAACAAAGAGTCTCAGGGAGAGAAGGCTGTAGAGTCTCAGACAAAAACTC
GTAAGTCGCTGGTCTCTCTTGTAGGAATATGGACAGAAACAAAATTATCG
CACATAAGTCTACCCGCGCGCATGCTTTGGGACCAGCCATGTCAATGTTG
TGTTGGCTTGGACAAATTTAAGTTAAGGAGGCTGGGAGGAGGAGGAGCGA
GCGAAGGAACACAGAAAATGCGCGTGCTGTGTCGGGATGAGTGAATGACA
CTTGGACAAAGCGAAAGCAAAGCCCATGCACTTCAGATACAACCAATGAA
CAAACATGTAATCGACCACATCGTCATGCGTACGATGATTTGCCTAGAAA
GTGCTGCCCATTTCCGTCTTCTTGAGTGATTTTGGGCGAATGCCGAAAGC
CGAAACCCCATCGGCGAGTTGACACTCTACTTCTGTGGACCGATCGAAAT
GCACCTTGCGCGACCTGCGGACAACGAGAATATTACCAGTTTGTGTTCAG
GTTCTTCTTACGCAATTGTATGAGTCCCAAGGTAGAGTGGGGCCAGTCCC
TCGACAGATTGACGTGTCTCTCAGCCTCCCCATCCGTCACAAAGCAACGT
CAGCGGCGACACCACCAAGCGTTCTCATGCTTCCCCCACTTTGTCTTTGG
ACGCAGATAGGGATGAGAAACACACGTCAACTCTCACATCACTATTCCGA
TTTCTCCCGCAACAGCACGTGCCTGTAGCCGCCGCGCTCGTGCCTCTAAT
GCCTTTCCCCCGCGCCTCCTTCATTTCTCTCACCCTGAGGCTCACTCGCA
AATATGCCCCCTTTAACTCTACCGCATCACACTCACATAAACAAGCCACA
TCGCCCTTTTTCGTCACAATGCCTCGCCTCGTCCCGTGGAGCGGCACCCT
TCTTCCTGTTCTGAGCGTCCTTGCTGTGTTATTTTTTTCCTTGCCAGTGG
CACGGGCATGGCGCACCCCGCTGTCCTCGAATCACTTAAGCCTCAGCACC
TTTGCTAGCAGCAGGAGAAGAGCAGCAGCTGCAGCAGCCACAACAACGAC
AATAACAACGTCCTCTACTTTCCGGCAAATGCATCCCTGGACGCGATGTT
TCGCCGTCTTTCCGGACGACGACGAACTGCGGAGTTCCAACGAGGGCCGG
GGCAGTGGAGGTGGTGGAGGAGGTGGAGGGCAAGGACCTGATGAGGAGCA
ACGCTCGGGGTCGGACATAGTTATGGTGGACATGACCGAGGACGGGAAGC
CCCCCCGTGTGACGATCCAGGCCTCGTACAGCGCCACGGACGATCTTGCG
CCGGTCATCACCACTTTGTGGAAAGGCATCGTGTTACTCGACAGAGAAGG
CACGTCCAGGCGGGCGGCGCAGAATACGATCCTGTCCGTAGGCGCGCTCG
GCCTGGGCTCCCTCCTCCTCTTCCTCCTCCTCCTTCCCGCGGGCTTTATC
CACGGTCCAACGGACTCGGCGACCGTTAATTCCCGCCCAACGTTCAATAC
GCGCACCTACATCAACCCCGATCAGGTGCTTGAGGAAGATTTCTACCGCG
CGGGCGGAGTGCGTCTGTGGGAGGATGAGGTTTATGACGACGAAGATTTC
TGAGGAGGGGGAGGGAGGGAAGGAAGGAAGGAGGGGACGGACGAAAGGAG
GGGGGGTTAGGGTGTACAGTGAAGGAGGGGGAGGCAGGCGGACAAGAGGA
CCTGACGTTAAAGAGGGATTGAGAGTTTCGACCGTGAACCGAGGAGGGAT
GGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG back to topprotein sequence of NO18G02420.1 >NO18G02420.1-protein ID=NO18G02420.1-protein|Name=NO18G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MPFPRASFISLTLRLTRKYAPFNSTASHSHKQATSPFFVTMPRLVPWSGT
LLPVLSVLAVLFFSLPVARAWRTPLSSNHLSLSTFASSRRRAAAAAATTT
TITTSSTFRQMHPWTRCFAVFPDDDELRSSNEGRGSGGGGGGGGQGPDEE
QRSGSDIVMVDMTEDGKPPRVTIQASYSATDDLAPVITTLWKGIVLLDRE
GTSRRAAQNTILSVGALGLGSLLLFLLLLPAGFIHGPTDSATVNSRPTFN
TRTYINPDQVLEEDFYRAGGVRLWEDEVYDDEDF* back to topmRNA from alignment at chr18:786321..788987- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G02420.1 ID=NO18G02420.1|Name=NO18G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2667bp|location=Sequence derived from alignment at chr18:786321..788987- (Nannochloropsis oceanica)
ACTGGTGTATGTTGAGTGGGCTGTGCAGAAGATGAGGTGTGCGCTATGAT
TAGACAGAAGCTACTGATTTATGCATGCAAAACTAGTTGACCCGTGGCAC
TTGTGTTCCACGCAGTCGATGTCGCCTGCTTGTAAGCTTGCTGACAACTA
GAACATATGGTTCTGACCAAAACTGATGCCTCCGCGGCGCTGCTTGTGGG
GGCGAGGGCAAAAGATGGCCATGTGCTCCTTCTTCGCTTCGAACCGCTGG
GAACAAAGAGTCTCAGGGAGAGAAGGCTGTAGAGTCTCAGACAAAAACTC
GTAAGTCGCTGGTCTCTCTTGTAGGAATATGGACAGAAACAAAATTATCG
CACATAAGTCTACCCGCGCGCATGCTTTGGGACCAGCCATGTCAATGTTG
TGTTGGCTTGGACAAATTTAAGTTAAGGAGGCTGGGAGGAGGAGGAGCGA
GCGAAGGAACACAGAAAATGCGCGTGCTGTGTCGGGATGAGTGAATGACA
CTTGGACAAAGCGAAAGCAAAGCCCATGCACTTCAGATACAACCAATGAA
CAAACATGTAATCGACCACATCGTCATGCGTACGATGATTTGCCTAGAAA
GTGCTGCCCATTTCCGTCTTCTTGAGTGATTTTGGGCGAATGCCGAAAGC
CGAAACCCCATCGGCGAGTTGACACTCTACTTCTGTGGACCGATCGAAAT
GCACCTTGCGCGACCTGCGGACAACGAGAATATTACCAGTTTGTGTTCAG
GTTCTTCTTACGCAATTGTATGAGTCCCAAGGTAGAGTGGGGCCAGTCCC
TCGACAGATTGACGTGTCTCTCAGCCTCCCCATCCGTCACAAAGCAACGT
CAGCGGCGACACCACCAAGCGTTCTCATGCTTCCCCCACTTTGTCTTTGG
ACGCAGATAGGGATGAGAAACACACGTCAACTCTCACATCACTATTCCGA
TTTCTCCCGCAACAGCACGTGCCTGTAGCCGCCGCGCTCGTGCCTCTAAT
GCCTTTCCCCCGCGCCTCCTTCATTTCTCTCACCCTGAGGCTCACTCGCA
AATATGCCCCCTTTAACTCTACCGCATCACACTCACATAAACAAGCCACA
TCGCCCTTTTTCGTCACAATGCCTCGCCTCGTCCCGTGGAGCGGCACCCT
TCTTCCTGTTCTGAGCGTCCTTGCTGTGTTATTTTTTTCCTTGCCAGTGG
CACGGGCATGGCGCACCCCGCTGTCCTCGAATCACTTAAGCCTCAGCACC
TTTGCTAGCAGCAGGAGAAGAGCAGCAGCTGCAGCAGCCACAACAACGAC
AATAACAACGTCCTCTACTTTCCGGCAAATGCATCCCTGGACGCGATGTT
TCGCCGTCTTTCCGGACGACGACGAACTGCGGAGTTCCAACGAGGGCCGG
GGCAGTGGAGGTGGTGGAGGAGGTGGAGGGCAAGGACCTGATGAGGAGCA
ACGCTCGGGGTCGGACATAGTTATGGTGGACATGACCGAGGTAAGGAAGG
GAGGGAGGGAGAAAGGGAGGAAGAGAGTGGGGGAAGGAGGACTGAGTCTT
CGTGCCGCTTGACAAACAGAGAAGCTGGCCATTGGTTTACCCTATCCTCC
TTCCCTCCTTCCTTCCCTTCCTCCCTTCCTCCTTCCCCCCCTCCCTCGGT
AGGACGGGAAGCCCCCCCGTGTGACGATCCAGGCCTCGTACAGCGCCACG
GACGATCTTGCGCCGGTCATCACCACTTTGTGGAAAGGCATCGTGTTACT
CGACAGAGAAGGCACGTCCAGGCGGGCGGCGCAGAATACGATCCTGTCCG
TAGGGTAAGTTGAAGGGGAGACCGGACGGAGGGAATGAGAAAGGGAGGGA
GGGAGGACACAAAGCCAACAGATGTATTTCATCTTCACTCCTCATCCCTC
TTCCGCCCCTCGGTCCCTCCCTCCTGCCACTCGGGACAGCGCGCTCGGCC
TGGGCTCCCTCCTCCTCTTCCTCCTCCTCCTTCCCGCGGGCTTTATCCAC
GGTCCAACGGACTCGGCGACCGTTAATTCCCGCCCAACGTTCAATACGCG
CACCTACATCAACCCCGATCAGGTAATTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTGGGCTCGACGATTCCACCAGGATGCCTCCCGTCCAATGTTCCCT
CCCTCCCTCCCTCCCACCCTCCTTCCCACCTTCCCTCCCGCCCTACTTCC
CTCCTTCCTCTCCCTCCTTCACCCGTCCCTACTTCCCTCCATTTTGACCC
TCCCCCCTTCTCCGTCTCTCCCTCCTTTGCTTCATGCTTTTAGAGGGGAA
AGTGAAGAATATCTCACCAGCCGGCTCTCTCACCCCGAACCTCCCTCCTT
CCTTCCCTCCCCCCCTCTCCCTCGTTCCCTCCCTCACTGACAGGTGCTTG
AGGAAGATTTCTACCGCGCGGGCGGAGTGCGTCTGTGGGAGGATGAGGTT
TATGACGACGAAGATTTCTGAGGAGGGGGAGGGAGGGAAGGAAGGAAGGA
GGGGACGGACGAAAGGAGGGGGGGTTAGGGTGTACAGTGAAGGAGGGGGA
GGCAGGCGGACAAGAGGACCTGACGTTAAAGAGGGATTGAGAGTTTCGAC
CGTGAACCGAGGAGGGATGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGG back to topCoding sequence (CDS) from alignment at chr18:786321..788987- >NO18G02420.1 ID=NO18G02420.1|Name=NO18G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr18:786321..788987- (Nannochloropsis oceanica)
ATGCCTTTCCCCCGCGCCTCCTTCATTTCTCTCACCCTGAGGCTCACTCG
CAAATATGCCCCCTTTAACTCTACCGCATCACACTCACATAAACAAGCCA
CATCGCCCTTTTTCGTCACAATGCCTCGCCTCGTCCCGTGGAGCGGCACC
CTTCTTCCTGTTCTGAGCGTCCTTGCTGTGTTATTTTTTTCCTTGCCAGT
GGCACGGGCATGGCGCACCCCGCTGTCCTCGAATCACTTAAGCCTCAGCA
CCTTTGCTAGCAGCAGGAGAAGAGCAGCAGCTGCAGCAGCCACAACAACG
ACAATAACAACGTCCTCTACTTTCCGGCAAATGCATCCCTGGACGCGATG
TTTCGCCGTCTTTCCGGACGACGACGAACTGCGGAGTTCCAACGAGGGCC
GGGGCAGTGGAGGTGGTGGAGGAGGTGGAGGGCAAGGACCTGATGAGGAG
CAACGCTCGGGGTCGGACATAGTTATGGTGGACATGACCGAGGACGGGAA
GCCCCCCCGTGTGACGATCCAGGCCTCGTACAGCGCCACGGACGATCTTG
CGCCGGTCATCACCACTTTGTGGAAAGGCATCGTGTTACTCGACAGAGAA
GGCACGTCCAGGCGGGCGGCGCAGAATACGATCCTGTCCGTAGGCGCGCT
CGGCCTGGGCTCCCTCCTCCTCTTCCTCCTCCTCCTTCCCGCGGGCTTTA
TCCACGGTCCAACGGACTCGGCGACCGTTAATTCCCGCCCAACGTTCAAT
ACGCGCACCTACATCAACCCCGATCAGGTGCTTGAGGAAGATTTCTACCG
CGCGGGCGGAGTGCGTCTGTGGGAGGATGAGGTTTATGACGACGAAGATT
TCTGA back to top
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