NO18G02360, NO18G02360 (gene) Nannochloropsis oceanica

Overview
NameNO18G02360
Unique NameNO18G02360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length988
Alignment locationchr18:766760..767747 +

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Properties
Property NameValue
DescriptionEndoribonuclease l-psp
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:766760..767747 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035959RutC-like_sf
IPR013813Endoribo_LPSP/chorism_mut-like
Homology
[Close]
BLAST of NO18G02360 vs. NCBI_GenBank
Match: EWM23442.1 (endoribonuclease l-psp [Nannochloropsis gaditana])

HSP 1 Score: 268.5 bits (685), Expect = 1.600e-68
Identity = 133/185 (71.89%), Postives = 156/185 (84.32%), Query Frame = 0 
Query:    3 SMLRPVFLRQGLVARHPFPCRSNNNPLYKAASVHTEAKLAEMGLKLPPPGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAAKLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDFLVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVELQ 188
            SM      R  LVARH       +  +  +  +HTEAKL EMGLKLPPPGVPKGNFAMAV+SGKMIYLSGHLPTDA+G+L+TGKVGAEV+PE+AQ AAKLIALNLLSSLKKE+GDLD+V+R++KL+GFVNC DGF+QQP+V+NGASDF VQV G+ KG HARSAVGTNALPLN+PVEIE IVE++
Sbjct:   51 SMFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGD-KGVHARSAVGTNALPLNIPVEIEAIVEVE 234
[Close]
BLAST of NO18G02360 vs. NCBI_GenBank
Match: XP_005854737.1 (endoribonuclease l-psp [Nannochloropsis gaditana CCMP526] >EKU21626.1 endoribonuclease l-psp [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 266.9 bits (681), Expect = 4.700e-68
Identity = 131/177 (74.01%), Postives = 154/177 (87.01%), Query Frame = 0 
Query:   11 RQGLVARHPFPCRSNNNPLYKAASVHTEAKLAEMGLKLPPPGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAAKLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDFLVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVELQ 188
            R  LVARH       +  +  +  +HTEAKL EMGLKLPPPGVPKGNFAMAV+SGKMIYLSGHLPTDA+G+L+TGKVGAEV+PE+AQ AAKLIALNLLSSLKKE+GDLD+V+R++KL+GFVNC DGF+QQP+V+NGASDF VQV G+ KG HARSAVGTNALPLN+PVEIE IVE++
Sbjct:    8 RPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGD-KGVHARSAVGTNALPLNIPVEIEAIVEVE 183
[Close]
BLAST of NO18G02360 vs. NCBI_GenBank
Match: CBN75071.1 (putative Translation Initiation Inhibitor [Ectocarpus siliculosus])

HSP 1 Score: 204.5 bits (519), Expect = 2.800e-49
Identity = 95/152 (62.50%), Postives = 123/152 (80.92%), Query Frame = 0 
Query:   34 SVHTEAKLAEMGLKLPPPGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAAKLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDFLVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVE 186
            SVHTEAKL E+G++LP P  P GNF M VR+G ++Y SGHLPT  +G+  TGKVG E+  E+AQ+AA+ +A+ L++S+KK++GDLD+V R++KL+GFVNCTDGF  QP V+NGASD   +V GE +G H+RSAVGTNALP+NVPVEIE IVE
Sbjct:   18 SVHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQELNEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGE-RGVHSRSAVGTNALPMNVPVEIEAIVE 168
[Close]
BLAST of NO18G02360 vs. NCBI_GenBank
Match: EWM23409.1 (endoribonuclease l-psp [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 3.700e-49
Identity = 95/153 (62.09%), Postives = 131/153 (85.62%), Query Frame = 0 
Query:   35 VHTEAKLAEMGLKLPPPGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAAKLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDFLVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVELQ 188
            V  EA+LA++G+ LP    PKGN+A+AVR+G +++L+GH+P   +G L+TGKVGA+ + E+ Q+AA++IA+NLL++LK E+GDLDKV+R++KL+GFVNC DGF+QQP+V+NGASDF VQV G+ KG HARSAVGTNALPLN+PVEIE +VE++
Sbjct:    2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGD-KGVHARSAVGTNALPLNIPVEIEAVVEVE 153
[Close]
BLAST of NO18G02360 vs. NCBI_GenBank
Match: ETL98094.1 (hypothetical protein L917_04769 [Phytophthora parasitica])

HSP 1 Score: 195.3 bits (495), Expect = 1.700e-46
Identity = 94/154 (61.04%), Postives = 121/154 (78.57%), Query Frame = 0 
Query:   34 SVHTEAKLAEMGLKLPPPGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAAKLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDFLVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVELQ 188
            +VH E K+ E+G  LP    PKGN+  +VRSG  IY++GHLP  A G LI GKVG ++TPE   +AA  +AL+L+++LK+E+GDLDK++RV+KL+GFVNC DGFTQQP VINGASD + +V G+ KG HARSAVGTNALPLNV VE+E IVE++
Sbjct:   19 NVHIERKIEELGYSLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGD-KGIHARSAVGTNALPLNVAVEVEAIVEIE 171
[Close]
BLAST of NO18G02360 vs. NCBI_GenBank
Match: ETO80456.1 (hypothetical protein F444_05101 [Phytophthora parasitica P1976])

HSP 1 Score: 195.3 bits (495), Expect = 1.700e-46
Identity = 94/154 (61.04%), Postives = 121/154 (78.57%), Query Frame = 0 
Query:   34 SVHTEAKLAEMGLKLPPPGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAAKLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDFLVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVELQ 188
            +VH E K+ E+G  LP    PKGN+  +VRSG  IY++GHLP  A G LI GKVG ++TPE   +AA  +AL+L+++LK+E+GDLDK++RV+KL+GFVNC DGFTQQP VINGASD + +V G+ KG HARSAVGTNALPLNV VE+E IVE++
Sbjct:   19 NVHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHFVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGD-KGIHARSAVGTNALPLNVAVEVEAIVEIE 171
[Close]
BLAST of NO18G02360 vs. NCBI_GenBank
Match: XP_008902408.1 (hypothetical protein PPTG_09268 [Phytophthora parasitica INRA-310] >ETI51704.1 hypothetical protein F443_05052 [Phytophthora parasitica P1569] >ETK91529.1 hypothetical protein L915_04923 [Phytophthora parasitica] >ETL44940.1 hypothetical protein L916_04870 [Phytophthora parasitica] >ETM51260.1 hypothetical protein L914_04873 [Phytophthora parasitica] >ETN12438.1 hypothetical protein PPTG_09268 [Phytophthora parasitica INRA-310] >ETP21488.1 hypothetical protein F441_05058 [Phytophthora parasitica CJ01A1] >KUG00690.1 hypothetical protein AM587_10006148 [Phytophthora nicotianae])

HSP 1 Score: 194.9 bits (494), Expect = 2.200e-46
Identity = 94/154 (61.04%), Postives = 121/154 (78.57%), Query Frame = 0 
Query:   34 SVHTEAKLAEMGLKLPPPGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAAKLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDFLVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVELQ 188
            +VH E K+ E+G  LP    PKGN+  +VRSG  IY++GHLP  A G LI GKVG ++TPE   +AA  +AL+L+++LK+E+GDLDK++RV+KL+GFVNC DGFTQQP VINGASD + +V G+ KG HARSAVGTNALPLNV VE+E IVE++
Sbjct:   19 NVHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGD-KGIHARSAVGTNALPLNVAVEVEAIVEIE 171
[Close]
BLAST of NO18G02360 vs. NCBI_GenBank
Match: POM62375.1 (Endoribonuclease L-PSP [Phytophthora palmivora var. palmivora])

HSP 1 Score: 194.5 bits (493), Expect = 2.900e-46
Identity = 93/154 (60.39%), Postives = 122/154 (79.22%), Query Frame = 0 
Query:   34 SVHTEAKLAEMGLKLPPPGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAAKLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDFLVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVELQ 188
            +VH E K+ E+G  LP    PKGN+  +VRSG  IYL+GHLP  A G L+ GKVG ++TPE A +AA+  AL+++++LK+E+GDLDK++RV+KL+GFVNC DGFTQQP VINGASD + +V G+ KG HARSAVGTNALPLNV VE+E +VE++
Sbjct:   13 NVHIERKIEEIGYTLPAVAEPKGNYRTSVRSGNTIYLAGHLPQPAGGDLVLGKVGKDLTPEQAYEAAQYCALSIMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGD-KGIHARSAVGTNALPLNVAVEVEAVVEIE 165
[Close]
BLAST of NO18G02360 vs. NCBI_GenBank
Match: XP_002899620.1 (endoribonuclease L-PSP, putative [Phytophthora infestans T30-4] >EEY61980.1 endoribonuclease L-PSP, putative [Phytophthora infestans T30-4])

HSP 1 Score: 194.1 bits (492), Expect = 3.800e-46
Identity = 93/154 (60.39%), Postives = 121/154 (78.57%), Query Frame = 0 
Query:   34 SVHTEAKLAEMGLKLPPPGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAAKLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDFLVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVELQ 188
            +VH E K+ E+G  LP    PKGN+  +VRSG  IY++GHLP  A G LI GKVG ++TPE   +AA  +AL+L+++LK+E+GDLDK++RV+KL+GFVNC DGFTQQP VINGASD + +V G+ KG HARSAVGTNALPLNV VE+E +VE++
Sbjct:   19 NVHIERKIEELGYTLPNVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGD-KGIHARSAVGTNALPLNVAVEVEAVVEIE 171
[Close]
BLAST of NO18G02360 vs. NCBI_GenBank
Match: XP_008864527.1 (hypothetical protein H310_02708 [Aphanomyces invadans] >ETW06452.1 hypothetical protein H310_02708 [Aphanomyces invadans])

HSP 1 Score: 191.8 bits (486), Expect = 1.900e-45
Identity = 90/156 (57.69%), Postives = 123/156 (78.85%), Query Frame = 0 
Query:   32 AASVHTEAKLAEMGLKLPPPGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAAKLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDFLVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVELQ 188
            A  VHTEA++ E+G  LP    PKGN+  +VR G +I+ +GHLP  A G+LI GKVG ++TPE+  +AA  +AL L+++LK+E+GDLD+V+R++K++GFVNC DGFT QP VING SD LV++ G+ +G HARSAVGTNALPL +PVE+E+IVE+Q
Sbjct:   13 ARFVHTEARIKELGYTLPAVATPKGNYRNSVRMGNLIFTAGHLPQPAGGELIKGKVGVDLTPEEGYEAAHHVALALVATLKQELGDLDRVKRIVKVVGFVNCVDGFTAQPSVINGTSDTLVKIFGD-RGIHARSAVGTNALPLGIPVEVEIIVEIQ 167
The following BLAST results are available for this feature:
BLAST of NO18G02360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23442.11.600e-6871.89endoribonuclease l-psp [Nannochloropsis gaditana][more]
XP_005854737.14.700e-6874.01endoribonuclease l-psp [Nannochloropsis gaditana C... [more]
CBN75071.12.800e-4962.50putative Translation Initiation Inhibitor [Ectocar... [more]
EWM23409.13.700e-4962.09endoribonuclease l-psp [Nannochloropsis gaditana][more]
ETL98094.11.700e-4661.04hypothetical protein L917_04769 [Phytophthora para... [more]
ETO80456.11.700e-4661.04hypothetical protein F444_05101 [Phytophthora para... [more]
XP_008902408.12.200e-4661.04hypothetical protein PPTG_09268 [Phytophthora para... [more]
POM62375.12.900e-4660.39Endoribonuclease L-PSP [Phytophthora palmivora var... [more]
XP_002899620.13.800e-4660.39endoribonuclease L-PSP, putative [Phytophthora inf... [more]
XP_008864527.11.900e-4557.69hypothetical protein H310_02708 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL009nonsL009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004069NSK004069Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02360.1NO18G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604555gene_8935Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100594g2gene7011Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02360.1NO18G02360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02360 ID=NO18G02360|Name=NO18G02360|organism=Nannochloropsis oceanica|type=gene|length=988bp
ACAGCACAGAAACGCTGACCATAGTCCAAAATATGATTTCCATGCTGCGT
CCAGTCTTTTTGCGCCAGGGTCTCGTCGCCAGgtaagtaagaagccgcct
tcgtcctccaagccacgccacgacgctcatttacccctcccctgcctccc
cacccaccaccaccccatcatatccacagACACCCCTTCCCATGCAGAAG
CAACAATAACCCCCTCTACAAAGCTGCCAGTGTGCACACTGAGGCCAAGC
TGGCCGAGATGGGGCTCAAGCTCCCGCCCCCCGGTGTGCCGAAGGGGAAC
TTCGCCATGGCCGTGCGGAGCGGCAAGATGATTTACCTGTgtacgttgca
ctgagagattgatggaagaattacctaagctgttcaattactttttggtt
gacttttcttcaatatccgcaatcgtagtctccctctttgccccgtcgca
cacccaatcctaacccacagaacgccgggcacatccccactctctctcat
ttacatattcacactctctctcacacagCTGGCCACCTCCCCACTGACGC
GGACGGGAAGCTCATAACGGGTAAAGTTGGTGCAGAGGTCACGCCAGAAG
ATGCCCAAAAAGCTGCCAAGCTGATAGCCCTCAACCTCCTCTCCTCCTTG
AAAAAGGAGATTGGAGACTTGGACAAGgtacgtctcttccttccctccct
gcctccctgcctccctccctccctcgttcactacttctcttcttcctctt
attcccttttccgggtttcgaatcacagGTCCAACGCGTGATCAAGCTTC
TAGGGTTTGTGAATTGCACGGACGGGTTTACGCAACAGCCCTTGGTCATT
AATGGCGCGAGTGATTTCTTGGTCCAGGTTCTGGGGGAGACGAAAGGGAA
ACATGCCAGGAGTGCGGTGGGTACGAATGCTTTACCTTTGAATGTGCCGG
TGGAGATTGAGATGATCGTGGAGTTGCAGTAGCGGGCG
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protein sequence of NO18G02360.1

>NO18G02360.1-protein ID=NO18G02360.1-protein|Name=NO18G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MISMLRPVFLRQGLVARHPFPCRSNNNPLYKAASVHTEAKLAEMGLKLPP
PGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAA
KLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDF
LVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVELQ*
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Synonyms
Publications