NO18G02360.1, NO18G02360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02360.1
Unique NameNO18G02360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length602
Alignment locationchr18:766760..767747 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:766760..767747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02360.1 vs.
Match: EWM23442.1 (endoribonuclease l-psp [Nannochloropsis gaditana])

HSP 1 Score: 268.5 bits (685), Expect = 1.600e-68
Identity = 133/185 (71.89%), Postives = 156/185 (84.32%), Query Frame = 0 
Query:    3 SMLRPVFLRQGLVARHPFPCRSNNNPLYKAASVHTEAKLAEMGLKLPPPGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAAKLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDFLVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVELQ 188
            SM      R  LVARH       +  +  +  +HTEAKL EMGLKLPPPGVPKGNFAMAV+SGKMIYLSGHLPTDA+G+L+TGKVGAEV+PE+AQ AAKLIALNLLSSLKKE+GDLD+V+R++KL+GFVNC DGF+QQP+V+NGASDF VQV G+ KG HARSAVGTNALPLN+PVEIE IVE++
Sbjct:   51 SMFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGD-KGVHARSAVGTNALPLNIPVEIEAIVEVE 234
The following BLAST results are available for this feature:
BLAST of NO18G02360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23442.11.600e-6871.89endoribonuclease l-psp [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02360NO18G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02360.1NO18G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02360.1.cds1NO18G02360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02360.1.cds2NO18G02360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02360.1.cds3NO18G02360.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02360.1.cds4NO18G02360.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02360.1 ID=NO18G02360.1|Name=NO18G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=602bp
ACAGCACAGAAACGCTGACCATAGTCCAAAATATGATTTCCATGCTGCGT
CCAGTCTTTTTGCGCCAGGGTCTCGTCGCCAGACACCCCTTCCCATGCAG
AAGCAACAATAACCCCCTCTACAAAGCTGCCAGTGTGCACACTGAGGCCA
AGCTGGCCGAGATGGGGCTCAAGCTCCCGCCCCCCGGTGTGCCGAAGGGG
AACTTCGCCATGGCCGTGCGGAGCGGCAAGATGATTTACCTGTCTGGCCA
CCTCCCCACTGACGCGGACGGGAAGCTCATAACGGGTAAAGTTGGTGCAG
AGGTCACGCCAGAAGATGCCCAAAAAGCTGCCAAGCTGATAGCCCTCAAC
CTCCTCTCCTCCTTGAAAAAGGAGATTGGAGACTTGGACAAGGTCCAACG
CGTGATCAAGCTTCTAGGGTTTGTGAATTGCACGGACGGGTTTACGCAAC
AGCCCTTGGTCATTAATGGCGCGAGTGATTTCTTGGTCCAGGTTCTGGGG
GAGACGAAAGGGAAACATGCCAGGAGTGCGGTGGGTACGAATGCTTTACC
TTTGAATGTGCCGGTGGAGATTGAGATGATCGTGGAGTTGCAGTAGCGGG
CG
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protein sequence of NO18G02360.1

>NO18G02360.1-protein ID=NO18G02360.1-protein|Name=NO18G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MISMLRPVFLRQGLVARHPFPCRSNNNPLYKAASVHTEAKLAEMGLKLPP
PGVPKGNFAMAVRSGKMIYLSGHLPTDADGKLITGKVGAEVTPEDAQKAA
KLIALNLLSSLKKEIGDLDKVQRVIKLLGFVNCTDGFTQQPLVINGASDF
LVQVLGETKGKHARSAVGTNALPLNVPVEIEMIVELQ*
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mRNA from alignment at chr18:766760..767747+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02360.1 ID=NO18G02360.1|Name=NO18G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=988bp|location=Sequence derived from alignment at chr18:766760..767747+ (Nannochloropsis oceanica)
ACAGCACAGAAACGCTGACCATAGTCCAAAATATGATTTCCATGCTGCGT
CCAGTCTTTTTGCGCCAGGGTCTCGTCGCCAGGTAAGTAAGAAGCCGCCT
TCGTCCTCCAAGCCACGCCACGACGCTCATTTACCCCTCCCCTGCCTCCC
CACCCACCACCACCCCATCATATCCACAGACACCCCTTCCCATGCAGAAG
CAACAATAACCCCCTCTACAAAGCTGCCAGTGTGCACACTGAGGCCAAGC
TGGCCGAGATGGGGCTCAAGCTCCCGCCCCCCGGTGTGCCGAAGGGGAAC
TTCGCCATGGCCGTGCGGAGCGGCAAGATGATTTACCTGTGTACGTTGCA
CTGAGAGATTGATGGAAGAATTACCTAAGCTGTTCAATTACTTTTTGGTT
GACTTTTCTTCAATATCCGCAATCGTAGTCTCCCTCTTTGCCCCGTCGCA
CACCCAATCCTAACCCACAGAACGCCGGGCACATCCCCACTCTCTCTCAT
TTACATATTCACACTCTCTCTCACACAGCTGGCCACCTCCCCACTGACGC
GGACGGGAAGCTCATAACGGGTAAAGTTGGTGCAGAGGTCACGCCAGAAG
ATGCCCAAAAAGCTGCCAAGCTGATAGCCCTCAACCTCCTCTCCTCCTTG
AAAAAGGAGATTGGAGACTTGGACAAGGTACGTCTCTTCCTTCCCTCCCT
GCCTCCCTGCCTCCCTCCCTCCCTCGTTCACTACTTCTCTTCTTCCTCTT
ATTCCCTTTTCCGGGTTTCGAATCACAGGTCCAACGCGTGATCAAGCTTC
TAGGGTTTGTGAATTGCACGGACGGGTTTACGCAACAGCCCTTGGTCATT
AATGGCGCGAGTGATTTCTTGGTCCAGGTTCTGGGGGAGACGAAAGGGAA
ACATGCCAGGAGTGCGGTGGGTACGAATGCTTTACCTTTGAATGTGCCGG
TGGAGATTGAGATGATCGTGGAGTTGCAGTAGCGGGCG
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Coding sequence (CDS) from alignment at chr18:766760..767747+

>NO18G02360.1 ID=NO18G02360.1|Name=NO18G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at chr18:766760..767747+ (Nannochloropsis oceanica)
ATGATTTCCATGCTGCGTCCAGTCTTTTTGCGCCAGGGTCTCGTCGCCAG
ACACCCCTTCCCATGCAGAAGCAACAATAACCCCCTCTACAAAGCTGCCA
GTGTGCACACTGAGGCCAAGCTGGCCGAGATGGGGCTCAAGCTCCCGCCC
CCCGGTGTGCCGAAGGGGAACTTCGCCATGGCCGTGCGGAGCGGCAAGAT
GATTTACCTGTCTGGCCACCTCCCCACTGACGCGGACGGGAAGCTCATAA
CGGGTAAAGTTGGTGCAGAGGTCACGCCAGAAGATGCCCAAAAAGCTGCC
AAGCTGATAGCCCTCAACCTCCTCTCCTCCTTGAAAAAGGAGATTGGAGA
CTTGGACAAGGTCCAACGCGTGATCAAGCTTCTAGGGTTTGTGAATTGCA
CGGACGGGTTTACGCAACAGCCCTTGGTCATTAATGGCGCGAGTGATTTC
TTGGTCCAGGTTCTGGGGGAGACGAAAGGGAAACATGCCAGGAGTGCGGT
GGGTACGAATGCTTTACCTTTGAATGTGCCGGTGGAGATTGAGATGATCG
TGGAGTTGCAGTAG
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Synonyms
Publications