NO18G02250, NO18G02250 (gene) Nannochloropsis oceanica

Overview
NameNO18G02250
Unique NameNO18G02250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1024
Alignment locationchr18:719867..720890 +

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Properties
Property NameValue
DescriptionLactoylglutathione lyase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:719867..720890 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029068Glyas_Bleomycin-R_OHBP_Dase
IPR037523VOC
IPR004360Glyas_Fos-R_dOase_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO18G02250 vs. NCBI_GenBank
Match: EWM23432.1 (lactoylglutathione lyase [Nannochloropsis gaditana])

HSP 1 Score: 249.6 bits (636), Expect = 7.900e-63
Identity = 111/150 (74.00%), Postives = 127/150 (84.67%), Query Frame = 0
Query:   42 LSLNHISRECRDPETMADFYTSLLGFSRVPAPPFPFGVIWLSHPSGLTMHLIEGTAEYRLVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALEAKGIPFALSQVPGTNTKQLFAFDPEGNGLECVYNPPPEEEL 192
            L LNH+SRECR+PETMA+FYTS++GFSRVPAPPFPF  IWL HPSG+TMHLIEGT +Y LVEG ARDAS G  S+ VF+QG FDPIHIRRGHHLAW V+DLE +K AL  +GIPF  S VPGT+T+Q+FAFDPEGNGLE VY PPP +EL
Sbjct:   30 LLLNHVSRECRNPETMAEFYTSVMGFSRVPAPPFPFVTIWLYHPSGVTMHLIEGTPDYGLVEGSARDASTGNCSQHVFMQGNFDPIHIRRGHHLAWTVKDLESIKAALGTRGIPFGTSTVPGTDTRQVFAFDPEGNGLEFVYKPPPNQEL 179          
BLAST of NO18G02250 vs. NCBI_GenBank
Match: PON80055.1 (Glyoxalase-like domain containing protein [Parasponia andersonii])

HSP 1 Score: 122.9 bits (307), Expect = 1.100e-24
Identity = 65/149 (43.62%), Postives = 83/149 (55.70%), Query Frame = 0
Query:   42 LSLNHISRECRDPETMADFYTSLLGFSRVPAPPF-PFGVIWLSHPSGLTMHLIEGTAEYRLVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALEAKGIPFALSQVPGTNTKQLFAFDPEGNGLECVYNPPPEE 190
            +SLNHISRE  D   +A+FY  + GF  + +P F  F VIWL+ PS  T+HLIE     +L EGP        WS    V    DP HIRRGHH+ ++V + E     L+ KGI    S VP    KQ+F FDP+GNGLE      P++
Sbjct:   13 VSLNHISRESSDIRRLANFYKEIFGFEEIESPDFGDFKVIWLNLPSAFTLHLIERNPITKLPEGP--------WSATSPV---LDPSHIRRGHHICFSVSNFESFVHTLKEKGIENYRSSVPNRGVKQVFFFDPDGNGLEVASQGAPQQ 150          
BLAST of NO18G02250 vs. NCBI_GenBank
Match: KVI03117.1 (Glyoxalase-like domain-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 116.3 bits (290), Expect = 1.000e-22
Identity = 58/144 (40.28%), Postives = 77/144 (53.47%), Query Frame = 0
Query:   42 LSLNHISRECRDPETMADFYTSLLGFSRVPAPPFPFGVIWLSHPSGLTMHLIEGTAEYRLVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALEAKGIPFALSQVPGTNTKQLFAFDPEGNGLECVYNP 186
            +SLNH+SRE  D + +A FY  + GF R+ +P F F VIWL       +HLIE     +L EGP        WS    V    DP ++ RGHHL ++V + +   + L+ KGI       P   TKQ+F FDP+GNGLE    P
Sbjct:    6 VSLNHVSRESSDIDRLAQFYQEIFGFERIESPKFEFKVIWLRQSPSFYLHLIERDPSTKLPEGP--------WSSNAAVA---DPHNLHRGHHLCFSVSNFDSFVKTLKEKGIETHEKTQPNGKTKQVFFFDPDGNGLEVASQP 138          
BLAST of NO18G02250 vs. NCBI_GenBank
Match: XP_024194725.1 (uncharacterized protein LOC112197971 [Rosa chinensis] >PRQ38622.1 putative lactoylglutathione lyase [Rosa chinensis])

HSP 1 Score: 116.3 bits (290), Expect = 1.000e-22
Identity = 61/140 (43.57%), Postives = 79/140 (56.43%), Query Frame = 0
Query:   42 LSLNHISRECRDPETMADFYTSLLGFSRVPAPPF-PFGVIWLSHPSGLTMHLIEGTAEYRLVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALEAKGIPFALSQVPGTNTKQLFAFDPEGNGLE 181
            +SLNHISRE  D   +A+FY    GF  + +P F  F VIWL+ PS  +MHLIE    Y+L EGP        WS    V    DP H+ RGHH+ ++V + E   + L+ KGI      +P    KQ+F FDP+GNGLE
Sbjct:   10 VSLNHISRESSDIRRLAEFYKETFGFEEIESPNFGEFKVIWLNLPSAFSMHLIERNPTYQLPEGP--------WSATSPVA---DPSHLPRGHHICFSVSNFESFVQTLKEKGIQTFQRSLPNGKVKQVFFFDPDGNGLE 138          
BLAST of NO18G02250 vs. NCBI_GenBank
Match: POO02158.1 (Glyoxalase-like domain containing protein [Trema orientalis])

HSP 1 Score: 115.2 bits (287), Expect = 2.300e-22
Identity = 65/158 (41.14%), Postives = 83/158 (52.53%), Query Frame = 0
Query:   42 LSLNHISRECRDPETMADFYTSLLGFSRVPAPPF-PFGVIWLSHPSGLTMHLIEGTAEYRLVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALEAKGIPFALSQVPGTNTKQLFAFDPE---------GNGLECVYNPPPEE 190
            +SLNHISRE  D   +A+FY  + GF  + +P F  F VIWL+ PS  T+HLIE     +L EGP        WS    V    DP HIRRGHH+ ++V + E     L+ KGI    S VP    KQ+F FDP+         GNGLE      P++
Sbjct:   13 VSLNHISRESSDIRRLANFYKEIFGFKEIESPDFGDFKVIWLNLPSAFTLHLIERNPITKLPEGP--------WSATSPV---LDPSHIRRGHHICFSVSNFESFVHTLKEKGIENYQSSVPNRGVKQVFFFDPDGKLSSFFFFGNGLEVASQGAPQQ 159          
BLAST of NO18G02250 vs. NCBI_GenBank
Match: OMO80740.1 (hypothetical protein CCACVL1_12778 [Corchorus capsularis])

HSP 1 Score: 114.8 bits (286), Expect = 3.000e-22
Identity = 56/144 (38.89%), Postives = 77/144 (53.47%), Query Frame = 0
Query:   44 LNHISRECRDPETMADFYTSLLGFSRVPAPPFPFGVIWLSHPSGLTMHLIEGTAEYRLVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALEAKGIPFALSQVPGTNTKQLFAFDPEGNGLECVYNPPP 188
            LNHISRE  D   +A+FY  + GF  + +P F F VIWL+ P    MHLIE + + +L EGP    S              DP H+ RGHH+ +NV + +   ++L+ KGI      +P    +Q+F FDP+GNGLE      P
Sbjct:  212 LNHISRESSDIRRLANFYNEVFGFEEIESPKFEFKVIWLTLPGATPMHLIERSPDTKLPEGPYSATS-----------AVADPTHLPRGHHICFNVSNFDSFVQSLKDKGIETFQRTLPNGKVRQVFFFDPDGNGLEVASREDP 344          
BLAST of NO18G02250 vs. NCBI_GenBank
Match: XP_004296757.1 (PREDICTED: lactoylglutathione lyase [Fragaria vesca subsp. vesca])

HSP 1 Score: 114.4 bits (285), Expect = 3.900e-22
Identity = 59/140 (42.14%), Postives = 80/140 (57.14%), Query Frame = 0
Query:   42 LSLNHISRECRDPETMADFYTSLLGFSRVPAPPF-PFGVIWLSHPSGLTMHLIEGTAEYRLVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALEAKGIPFALSQVPGTNTKQLFAFDPEGNGLE 181
            +SLNHISRE  D   +A+FY  + GF  + +P F  F VIWL+ PS  +MHLIE    Y+L EGP        WS    V    DP H+ RGHH+ ++V + +   + L+ KGI      +P    +Q+F FDP+GNGLE
Sbjct:    9 VSLNHISRESSDIRRLAEFYKEIFGFEEIESPNFGEFKVIWLNLPSTFSMHLIERNPTYQLPEGP--------WSATSPVA---DPSHLPRGHHICFSVSNFDSFVQTLKEKGIQTFQRSLPNGKVRQVFFFDPDGNGLE 137          
BLAST of NO18G02250 vs. NCBI_GenBank
Match: XP_024021232.1 (methylmalonyl-CoA epimerase, mitochondrial [Morus notabilis])

HSP 1 Score: 114.4 bits (285), Expect = 3.900e-22
Identity = 59/140 (42.14%), Postives = 79/140 (56.43%), Query Frame = 0
Query:   42 LSLNHISRECRDPETMADFYTSLLGFSRVPAPPF-PFGVIWLSHPSGLTMHLIEGTAEYRLVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALEAKGIPFALSQVPGTNTKQLFAFDPEGNGLE 181
            +SLNHISRE  D   +A+FY  + GF  +  P F  F VIWL+ PS  ++HLIE     +L EGP        WS    V    DP H+ RGHH+ ++V + +   + L+ KG+    S VP    KQ+F FDP+GNGLE
Sbjct:    7 VSLNHISRESSDVTRLANFYKEIFGFEEIETPNFGEFKVIWLNLPSAFSLHLIERNPATKLPEGP--------WSATSAVA---DPSHLPRGHHICFSVDNFDSFVQTLKDKGVETFQSSVPSRGVKQVFFFDPDGNGLE 135          
BLAST of NO18G02250 vs. NCBI_GenBank
Match: CDO99068.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 114.0 bits (284), Expect = 5.100e-22
Identity = 59/139 (42.45%), Postives = 76/139 (54.68%), Query Frame = 0
Query:   42 LSLNHISRECRDPETMADFYTSLLGFSRVPAPPFPFGVIWLSHPSGLTMHLIEGTAEYRLVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALEAKGIPFALSQVPGTNTKQLFAFDPEGNGLE 181
            +SLNH+SRE  D E +A FY  + GF RV +P F F VIWL       +HLIE     +L EGP        WS    V    DP H+ RGHH+ ++V + +   +A++ KGI       P   TKQ F FDP+GNGLE
Sbjct:    9 VSLNHVSRESSDIERLAQFYIEVFGFQRVESPKFEFDVIWLKLEPSFYLHLIERDPTTKLPEGP--------WSSTSAVA---DPKHLPRGHHICFSVSNFDSFVQAVKEKGIQIHHRTQPDGKTKQAFFFDPDGNGLE 136          
BLAST of NO18G02250 vs. NCBI_GenBank
Match: XP_021811902.1 (lactoylglutathione lyase-like [Prunus avium])

HSP 1 Score: 113.6 bits (283), Expect = 6.700e-22
Identity = 59/139 (42.45%), Postives = 77/139 (55.40%), Query Frame = 0
Query:   42 LSLNHISRECRDPETMADFYTSLLGFSRVPAPPFPFGVIWLSHPSGLTMHLIEGTAEYRLVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALEAKGIPFALSQVPGTNTKQLFAFDPEGNGLE 181
            +SLNHISRE  D   +A+FY  + GF  + +P   F VIWL  P G+  HLIE   +Y L EGP        WS    V    DP H+RRGHH+ ++V +     + L+ KGI      +P    KQ+F FDP+GNGLE
Sbjct:    9 VSLNHISRESSDIRRLANFYKEIFGFEEIESPNLEFKVIWLKGP-GVAFHLIERNPDYNLPEGP--------WSATSPVA---DPSHLRRGHHVCFSVSNFHSFVQTLKDKGIQTYEKSLPDGKVKQVFFFDPDGNGLE 135          
The following BLAST results are available for this feature:
BLAST of NO18G02250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23432.17.900e-6374.00lactoylglutathione lyase [Nannochloropsis gaditana... [more]
PON80055.11.100e-2443.62Glyoxalase-like domain containing protein [Paraspo... [more]
KVI03117.11.000e-2240.28Glyoxalase-like domain-containing protein [Cynara ... [more]
XP_024194725.11.000e-2243.57uncharacterized protein LOC112197971 [Rosa chinens... [more]
POO02158.12.300e-2241.14Glyoxalase-like domain containing protein [Trema o... [more]
OMO80740.13.000e-2238.89hypothetical protein CCACVL1_12778 [Corchorus caps... [more]
XP_004296757.13.900e-2242.14PREDICTED: lactoylglutathione lyase [Fragaria vesc... [more]
XP_024021232.13.900e-2242.14methylmalonyl-CoA epimerase, mitochondrial [Morus ... [more]
CDO99068.15.100e-2242.45unnamed protein product [Coffea canephora][more]
XP_021811902.16.700e-2242.45lactoylglutathione lyase-like [Prunus avium][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL009nonsL009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004080NSK004080Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02250.1NO18G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604505gene_8921Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100238g5gene7023Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02250.1NO18G02250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02250 ID=NO18G02250|Name=NO18G02250|organism=Nannochloropsis oceanica|type=gene|length=1024bp
CCTTAAGTTGAAGGGCCGCGACGGGAGGTTTCTGCCTTCCGTGTGCTGCA
TCTACTCTACCCAGACTGACAATACAATACAATGGCTATAGCACTTACGA
TTTCACAAATACAGGCACAGGCAGCAGCAAAATCTAATAAGAAACCGTCT
GAAGAGTGAATGGGTCGTAGCGCACCTTTGACTTACAATTACGCCGCCAT
ACACCCATCAGCCTATGGCGAGGACACATATCCCCCAGGAGAGACTGGAA
GCACTGGAACATTTTACGCGGAAGCAGACGAATACCGCTAGTATTACATA
AGTGTTCATGCACTGACGTGATCTCTCCGTTTCTTCGACCATTTCCACAC
AGGCATCACCACAGCGTCCTCCGAATGCCGGTGCCAGCTGCGCGTCGCTT
CTTATGTCTCCTCCTATTACTTATTTTCAGCCTCCTCCCTTTTACTACCA
CGGGCGCCGGGAGTACCTCCTTCTCCTCTTCCTCGTCCTCCGTCTTTCTG
TCCCTCAATCATATTAGCCGCGAGTGCCGTGACCCCGAAACCATGGCCGA
CTTCTACACGAGCCTGCTCGGCTTCTCCCGTGTCCCTGCGCCTCCTTTTC
CCTTTGGAGTAATTTGGTTGTCCCATCCGAGCGGGCTTACCATGCACCTC
ATCGAAGGCACAGCCGAGTATCGACTTGTCGAAGGCCCCGCGCGCGATGC
TTCGCGTGGGGAGTGGAGCAAGGAGGTGTTTGTGCAAGGCAAGTTTGATC
CGATCCACATCCGGCGGGGGCATCACCTGGCGTGGAATGTGAGGGATTTG
GAGCAGGTAAAACGGGCGCTCGAGGCTAAAGGCATTCCTTTCGCTTTGTC
TCAGGTACCCGGCACAAATACAAAACAATTGTTTGCCTTTGATCCAGAGG
GAAATGGGTTGGAGTGCGTGTACAACCCACCGCCGGAAGAGGAACTATAA
GGAAAAGAAAACGACGAAAGACACAAGACAAAAGAGGAGACACCAGCAGA
GAATAAAAAGACGAGCATTGTCCA
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protein sequence of NO18G02250.1

>NO18G02250.1-protein ID=NO18G02250.1-protein|Name=NO18G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MPVPAARRFLCLLLLLIFSLLPFTTTGAGSTSFSSSSSSVFLSLNHISRE
CRDPETMADFYTSLLGFSRVPAPPFPFGVIWLSHPSGLTMHLIEGTAEYR
LVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALE
AKGIPFALSQVPGTNTKQLFAFDPEGNGLECVYNPPPEEEL*
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Synonyms
Publications