NO18G02250.1, NO18G02250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02250.1
Unique NameNO18G02250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1024
Alignment locationchr18:719867..720890 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:719867..720890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02250.1 vs.
Match: EWM23432.1 (lactoylglutathione lyase [Nannochloropsis gaditana])

HSP 1 Score: 246.5 bits (628), Expect = 6.600e-62
Identity = 122/187 (65.24%), Postives = 142/187 (75.94%), Query Frame = 0 
Query:    7 RRFLCLLLLL--IFSLLPFTTTGAGSTSFSSSSSSVFLSLNHISRECRDPETMADFYTSLLGFSRVPAPPFPFGVIWLSHPSGLTMHLIEGTAEYRLVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALEAKGIPFALSQVPGTNTKQLFAFDPEGNGLECVYNPPPEEEL 192
            +RF   L +L  +  LLP    GAG T+         L LNH+SRECR+PETMA+FYTS++GFSRVPAPPFPF  IWL HPSG+TMHLIEGT +Y LVEG ARDAS G  S+ VF+QG FDPIHIRRGHHLAW V+DLE +K AL  +GIPF  S VPGT+T+Q+FAFDPEGNGLE VY PPP +EL
Sbjct:    2 QRFWPYLFILSHLHVLLP-KCLGAGDTNV--------LLLNHVSRECRNPETMAEFYTSVMGFSRVPAPPFPFVTIWLYHPSGVTMHLIEGTPDYGLVEGSARDASTGNCSQHVFMQGNFDPIHIRRGHHLAWTVKDLESIKAALGTRGIPFGTSTVPGTDTRQVFAFDPEGNGLEFVYKPPPNQEL 179
The following BLAST results are available for this feature:
BLAST of NO18G02250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23432.16.600e-6265.24lactoylglutathione lyase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02250NO18G02250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02250.1NO18G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02250.1.cds1NO18G02250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02250.1 ID=NO18G02250.1|Name=NO18G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1024bp
CCTTAAGTTGAAGGGCCGCGACGGGAGGTTTCTGCCTTCCGTGTGCTGCA
TCTACTCTACCCAGACTGACAATACAATACAATGGCTATAGCACTTACGA
TTTCACAAATACAGGCACAGGCAGCAGCAAAATCTAATAAGAAACCGTCT
GAAGAGTGAATGGGTCGTAGCGCACCTTTGACTTACAATTACGCCGCCAT
ACACCCATCAGCCTATGGCGAGGACACATATCCCCCAGGAGAGACTGGAA
GCACTGGAACATTTTACGCGGAAGCAGACGAATACCGCTAGTATTACATA
AGTGTTCATGCACTGACGTGATCTCTCCGTTTCTTCGACCATTTCCACAC
AGGCATCACCACAGCGTCCTCCGAATGCCGGTGCCAGCTGCGCGTCGCTT
CTTATGTCTCCTCCTATTACTTATTTTCAGCCTCCTCCCTTTTACTACCA
CGGGCGCCGGGAGTACCTCCTTCTCCTCTTCCTCGTCCTCCGTCTTTCTG
TCCCTCAATCATATTAGCCGCGAGTGCCGTGACCCCGAAACCATGGCCGA
CTTCTACACGAGCCTGCTCGGCTTCTCCCGTGTCCCTGCGCCTCCTTTTC
CCTTTGGAGTAATTTGGTTGTCCCATCCGAGCGGGCTTACCATGCACCTC
ATCGAAGGCACAGCCGAGTATCGACTTGTCGAAGGCCCCGCGCGCGATGC
TTCGCGTGGGGAGTGGAGCAAGGAGGTGTTTGTGCAAGGCAAGTTTGATC
CGATCCACATCCGGCGGGGGCATCACCTGGCGTGGAATGTGAGGGATTTG
GAGCAGGTAAAACGGGCGCTCGAGGCTAAAGGCATTCCTTTCGCTTTGTC
TCAGGTACCCGGCACAAATACAAAACAATTGTTTGCCTTTGATCCAGAGG
GAAATGGGTTGGAGTGCGTGTACAACCCACCGCCGGAAGAGGAACTATAA
GGAAAAGAAAACGACGAAAGACACAAGACAAAAGAGGAGACACCAGCAGA
GAATAAAAAGACGAGCATTGTCCA
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protein sequence of NO18G02250.1

>NO18G02250.1-protein ID=NO18G02250.1-protein|Name=NO18G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MPVPAARRFLCLLLLLIFSLLPFTTTGAGSTSFSSSSSSVFLSLNHISRE
CRDPETMADFYTSLLGFSRVPAPPFPFGVIWLSHPSGLTMHLIEGTAEYR
LVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALE
AKGIPFALSQVPGTNTKQLFAFDPEGNGLECVYNPPPEEEL*
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mRNA from alignment at chr18:719867..720890+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02250.1 ID=NO18G02250.1|Name=NO18G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1024bp|location=Sequence derived from alignment at chr18:719867..720890+ (Nannochloropsis oceanica)
CCTTAAGTTGAAGGGCCGCGACGGGAGGTTTCTGCCTTCCGTGTGCTGCA
TCTACTCTACCCAGACTGACAATACAATACAATGGCTATAGCACTTACGA
TTTCACAAATACAGGCACAGGCAGCAGCAAAATCTAATAAGAAACCGTCT
GAAGAGTGAATGGGTCGTAGCGCACCTTTGACTTACAATTACGCCGCCAT
ACACCCATCAGCCTATGGCGAGGACACATATCCCCCAGGAGAGACTGGAA
GCACTGGAACATTTTACGCGGAAGCAGACGAATACCGCTAGTATTACATA
AGTGTTCATGCACTGACGTGATCTCTCCGTTTCTTCGACCATTTCCACAC
AGGCATCACCACAGCGTCCTCCGAATGCCGGTGCCAGCTGCGCGTCGCTT
CTTATGTCTCCTCCTATTACTTATTTTCAGCCTCCTCCCTTTTACTACCA
CGGGCGCCGGGAGTACCTCCTTCTCCTCTTCCTCGTCCTCCGTCTTTCTG
TCCCTCAATCATATTAGCCGCGAGTGCCGTGACCCCGAAACCATGGCCGA
CTTCTACACGAGCCTGCTCGGCTTCTCCCGTGTCCCTGCGCCTCCTTTTC
CCTTTGGAGTAATTTGGTTGTCCCATCCGAGCGGGCTTACCATGCACCTC
ATCGAAGGCACAGCCGAGTATCGACTTGTCGAAGGCCCCGCGCGCGATGC
TTCGCGTGGGGAGTGGAGCAAGGAGGTGTTTGTGCAAGGCAAGTTTGATC
CGATCCACATCCGGCGGGGGCATCACCTGGCGTGGAATGTGAGGGATTTG
GAGCAGGTAAAACGGGCGCTCGAGGCTAAAGGCATTCCTTTCGCTTTGTC
TCAGGTACCCGGCACAAATACAAAACAATTGTTTGCCTTTGATCCAGAGG
GAAATGGGTTGGAGTGCGTGTACAACCCACCGCCGGAAGAGGAACTATAA
GGAAAAGAAAACGACGAAAGACACAAGACAAAAGAGGAGACACCAGCAGA
GAATAAAAAGACGAGCATTGTCCA
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Coding sequence (CDS) from alignment at chr18:719867..720890+

>NO18G02250.1 ID=NO18G02250.1|Name=NO18G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at chr18:719867..720890+ (Nannochloropsis oceanica)
ATGCCGGTGCCAGCTGCGCGTCGCTTCTTATGTCTCCTCCTATTACTTAT
TTTCAGCCTCCTCCCTTTTACTACCACGGGCGCCGGGAGTACCTCCTTCT
CCTCTTCCTCGTCCTCCGTCTTTCTGTCCCTCAATCATATTAGCCGCGAG
TGCCGTGACCCCGAAACCATGGCCGACTTCTACACGAGCCTGCTCGGCTT
CTCCCGTGTCCCTGCGCCTCCTTTTCCCTTTGGAGTAATTTGGTTGTCCC
ATCCGAGCGGGCTTACCATGCACCTCATCGAAGGCACAGCCGAGTATCGA
CTTGTCGAAGGCCCCGCGCGCGATGCTTCGCGTGGGGAGTGGAGCAAGGA
GGTGTTTGTGCAAGGCAAGTTTGATCCGATCCACATCCGGCGGGGGCATC
ACCTGGCGTGGAATGTGAGGGATTTGGAGCAGGTAAAACGGGCGCTCGAG
GCTAAAGGCATTCCTTTCGCTTTGTCTCAGGTACCCGGCACAAATACAAA
ACAATTGTTTGCCTTTGATCCAGAGGGAAATGGGTTGGAGTGCGTGTACA
ACCCACCGCCGGAAGAGGAACTATAA
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Synonyms
Publications