NO18G02110, NO18G02110 (gene) Nannochloropsis oceanica

Overview
NameNO18G02110
Unique NameNO18G02110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1270
Alignment locationchr18:672055..673324 +

Link to JBrowse

Properties
Property NameValue
DescriptionExocyst complex component 7-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:672055..673324 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000145exocyst
GO:0000145exocyst
Vocabulary: Biological Process
TermDefinition
GO:0006887exocytosis
GO:0015031protein transport
GO:0006887exocytosis
Vocabulary: INTERPRO
TermDefinition
IPR004140Exo70
Homology
[Close]
BLAST of NO18G02110 vs. NCBI_GenBank
Match: EWM23404.1 (exocyst complex component 7-like protein [Nannochloropsis gaditana])

HSP 1 Score: 208.8 bits (530), Expect = 2.300e-50
Identity = 119/248 (47.98%), Postives = 170/248 (68.55%), Query Frame = 0 
Query:    1 MSSTLVDDGDALAQSLQTMSASLETHHRSTTDILSILLKIDTRLSSLEANMSPIRHVTEQLTLAEQNVISSYNCMKEVHEHFRVANIADTVLRKGL-APSSVPSPSSTSTIIIEEESSSVGAYVEVVERVQESLAFLRRNHKMKSAESATRQLELKQQRLLTDIKNEISRLLSSGSTCIIHSSSIPTSSSLPVPPSSVYEHGEPIGMSLARRVKVLCETMMRTGSGGWMDAYVKARRGKVEMAVRLFL 248
            MS  ++DDG+ALAQS+ T+S SLE HH+ST + LSIL KID RLSSLE+NM+PIR VTEQLT AE +V  SY  ++ +H++FRV   AD VLRKGL AP    S +S  T I EE+  ++ AY+++++RV  +L FLR   +++S E+A R L++++ +LL ++K EI RL+  GS C +     P+    P   S +Y+H EPI ++++RR++ +CE+M R G   W DAY +AR  KVE AV +FL
Sbjct:    1 MSIAVLDDGEALAQSIHTISTSLEEHHKSTLESLSILDKIDHRLSSLESNMAPIRLVTEQLTRAEHHVTQSYAALRRIHKNFRVCADADVVLRKGLGAPIPALSQASAPT-ITEEDRCALNAYMQILDRVHAALTFLRVRPRIRSGEAAIRHLDVRRSKLLAEMKEEIVRLIVQGSCCTVQG---PSGRLSPWGESPLYQHTEPIALNISRRIRDICESMARAGDMRWADAYARARGSKVEEAVTVFL 244
[Close]
BLAST of NO18G02110 vs. NCBI_GenBank
Match: XP_005855213.1 (exocyst complex component 7 [Nannochloropsis gaditana CCMP526] >EKU21147.1 exocyst complex component 7 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 151.8 bits (382), Expect = 3.400e-33
Identity = 86/198 (43.43%), Postives = 129/198 (65.15%), Query Frame = 0 
Query:   51 MSPIRHVTEQLTLAEQNVISSYNCMKEVHEHFRVANIADTVLRKGL-APSSVPSPSSTSTIIIEEESSSVGAYVEVVERVQESLAFLRRNHKMKSAESATRQLELKQQRLLTDIKNEISRLLSSGSTCIIHSSSIPTSSSLPVPPSSVYEHGEPIGMSLARRVKVLCETMMRTGSGGWMDAYVKARRGKVEMAVRLFL 248
            M+PIR VTEQLT AE +V  SY  ++ +H++FRV   AD VLRKGL AP    S +S  T I EE+  ++ AY+++++RV  +L FLR   +++S E+A R L++++ +LL ++K EI RL+  GS C +     P+    P   S +Y+H EPI ++++RR++ +CE+M R G   W DAY +AR  KVE AV +FL
Sbjct:    1 MAPIRLVTEQLTRAEHHVTQSYAALRRIHKNFRVCADADVVLRKGLGAPIPALSQASAPT-ITEEDRCALNAYMQILDRVHAALTFLRVRPRIRSGEAAIRHLDVRRSKLLAEMKEEIVRLIVQGSCCTVQG---PSGRLSPWGESPLYQHTEPIALNISRRIRDICESMARAGDMRWADAYARARGSKVEEAVTVFL 194
The following BLAST results are available for this feature:
BLAST of NO18G02110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23404.12.300e-5047.98exocyst complex component 7-like protein [Nannochl... [more]
XP_005855213.13.400e-3343.43exocyst complex component 7 [Nannochloropsis gadit... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004070NSK004070Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02110.1NO18G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633219gene_8909Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100077g3gene7039Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02110.1NO18G02110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02110 ID=NO18G02110|Name=NO18G02110|organism=Nannochloropsis oceanica|type=gene|length=1270bp
ACAACAGGCAAGAAAGAGCAAGGGTATAAGGGACTTGATACGATTTCCGT
AGCTGTCCCTCCATCGAGCCATCTAGGCCTCTCCAACTTGCCGCCGCGGC
ATCATCATTATCAAGCTCACGAAGCCTACTAGGGCGCGCAGAGGCAGCCA
TGAGCAGTACACTTGTGGACGACGGGGATGCCTTGGCGCAAAGCCTCCAA
ACCATGAGTGCTTCCCTCGAGgtatgtgaagatgtggatgtgaatggcac
tgcttgttagtcccaggatgtcaagtgcttggcttgcccgtctgccacct
tgtccaggccctctcgtgcatatggtccatgtgacagggccccgtcttcc
ctcccaatctctgcacccagaaattttatcgtgacgaacgtacggccatt
gctaccaccagctgtatatacatccatctgataattccccatccctgcat
cccaaaatctctctcccctccccagACCCACCATAGGTCGACCACCGACA
TCCTCTCGATTCTCCTCAAAATCGACACCCGTCTCAGCAGCCTCGAAGCC
AACATGTCGCCCATTCGCCACGTTACGGAGCAACTAACACTGGCCGAGCA
GAACGTCATCTCCTCCTACAACTGCATGAAAGAGGTCCATGAGCACTTCC
GGGTCGCCAATATAGCAGACACCGTTCTCCGCAAGGGCCTTGCCCCGTCC
TCCGTCCCTTCCCCCTCCTCCACCTCTACCATTATAATCGAAGAGGAGAG
TAGCAGCGTAGGGGCATATGTAGAGGTGGTGGAGCGCGTGCAAGAGTCCC
TGGCGTTTCTGCGTCGCAACCACAAGATGAAGTCCGCCGAGAGTGCCACG
AGGCAGTTGGAGCTGAAACAACAACGGCTCCTAACAGACATTAAAAACGA
AATCTCTCGATTGCTCTCTTCTGGTTCAACCTGTATCATTCATTCGTCAT
CAATCCCTACTTCGTCCTCCCTCCCTGTCCCGCCGTCATCGGTCTACGAG
CATGGGGAGCCCATTGGCATGTCCTTGGCGAGGAGGGTTAAGGTGTTGTG
TGAGACGATGATGAGGACGGGGAGTGGAGGGTGGATGGATGCGTACGTAA
AGGCACGCAGAGGCAAGGTAGAGATGGCTGTGAGGTTATTCTTGGAAAAG
CAGCAGAAGCTGATGACCACGGGTGCTGGCGGAGGAGGGGGGGGGGAGGA
GGAGGAGGAGGAGGGGAGGGGGGGAGGCTACAGGATGTACTCCTCCACCA
GGCCCTCTCTCAGGGTCTAG
back to top

protein sequence of NO18G02110.1

>NO18G02110.1-protein ID=NO18G02110.1-protein|Name=NO18G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MSSTLVDDGDALAQSLQTMSASLETHHRSTTDILSILLKIDTRLSSLEAN
MSPIRHVTEQLTLAEQNVISSYNCMKEVHEHFRVANIADTVLRKGLAPSS
VPSPSSTSTIIIEEESSSVGAYVEVVERVQESLAFLRRNHKMKSAESATR
QLELKQQRLLTDIKNEISRLLSSGSTCIIHSSSIPTSSSLPVPPSSVYEH
GEPIGMSLARRVKVLCETMMRTGSGGWMDAYVKARRGKVEMAVRLFLEKQ
QKLMTTGAGGGGGGEEEEEEGRGGGYRMYSSTRPSLRV*
back to top
Synonyms
Publications