NO18G02110.1, NO18G02110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02110.1
Unique NameNO18G02110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1016
Alignment locationchr18:672055..673324 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:672055..673324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02110.1 vs.
Match: EWM23404.1 (exocyst complex component 7-like protein [Nannochloropsis gaditana])

HSP 1 Score: 217.2 bits (552), Expect = 6.500e-53
Identity = 131/279 (46.95%), Postives = 186/279 (66.67%), Query Frame = 0 
Query:    1 MSSTLVDDGDALAQSLQTMSASLETHHRSTTDILSILLKIDTRLSSLEANMSPIRHVTEQLTLAEQNVISSYNCMKEVHEHFRVANIADTVLRKGL-APSSVPSPSSTSTIIIEEESSSVGAYVEVVERVQESLAFLRRNHKMKSAESATRQLELKQQRLLTDIKNEISRLLSSGSTCIIHSSSIPTSSSLPVPPSSVYEHGEPIGMSLARRVKVLCETMMRTGSGGWMDAYVKARRGKVEMAVRLFLEKQQKLMTTGAGGGGGGEEEEEEGRGGGYRM 279
            MS  ++DDG+ALAQS+ T+S SLE HH+ST + LSIL KID RLSSLE+NM+PIR VTEQLT AE +V  SY  ++ +H++FRV   AD VLRKGL AP    S +S  T I EE+  ++ AY+++++RV  +L FLR   +++S E+A R L++++ +LL ++K EI RL+  GS C +     P+    P   S +Y+H EPI ++++RR++ +CE+M R G   W DAY +AR  KVE AV +FL  QQ+  + G GGG GG      G+GG  R+
Sbjct:    1 MSIAVLDDGEALAQSIHTISTSLEEHHKSTLESLSILDKIDHRLSSLESNMAPIRLVTEQLTRAEHHVTQSYAALRRIHKNFRVCADADVVLRKGLGAPIPALSQASAPT-ITEEDRCALNAYMQILDRVHAALTFLRVRPRIRSGEAAIRHLDVRRSKLLAEMKEEIVRLIVQGSCCTVQG---PSGRLSPWGESPLYQHTEPIALNISRRIRDICESMARAGDMRWADAYARARGSKVEEAVTVFLHGQQQ--SFGGGGGSGG------GKGGETRL 267
The following BLAST results are available for this feature:
BLAST of NO18G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23404.16.500e-5346.95exocyst complex component 7-like protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02110NO18G02110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02110.1NO18G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02110.1.cds1NO18G02110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02110.1.cds2NO18G02110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02110.1 ID=NO18G02110.1|Name=NO18G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1016bp
ACAACAGGCAAGAAAGAGCAAGGGTATAAGGGACTTGATACGATTTCCGT
AGCTGTCCCTCCATCGAGCCATCTAGGCCTCTCCAACTTGCCGCCGCGGC
ATCATCATTATCAAGCTCACGAAGCCTACTAGGGCGCGCAGAGGCAGCCA
TGAGCAGTACACTTGTGGACGACGGGGATGCCTTGGCGCAAAGCCTCCAA
ACCATGAGTGCTTCCCTCGAGACCCACCATAGGTCGACCACCGACATCCT
CTCGATTCTCCTCAAAATCGACACCCGTCTCAGCAGCCTCGAAGCCAACA
TGTCGCCCATTCGCCACGTTACGGAGCAACTAACACTGGCCGAGCAGAAC
GTCATCTCCTCCTACAACTGCATGAAAGAGGTCCATGAGCACTTCCGGGT
CGCCAATATAGCAGACACCGTTCTCCGCAAGGGCCTTGCCCCGTCCTCCG
TCCCTTCCCCCTCCTCCACCTCTACCATTATAATCGAAGAGGAGAGTAGC
AGCGTAGGGGCATATGTAGAGGTGGTGGAGCGCGTGCAAGAGTCCCTGGC
GTTTCTGCGTCGCAACCACAAGATGAAGTCCGCCGAGAGTGCCACGAGGC
AGTTGGAGCTGAAACAACAACGGCTCCTAACAGACATTAAAAACGAAATC
TCTCGATTGCTCTCTTCTGGTTCAACCTGTATCATTCATTCGTCATCAAT
CCCTACTTCGTCCTCCCTCCCTGTCCCGCCGTCATCGGTCTACGAGCATG
GGGAGCCCATTGGCATGTCCTTGGCGAGGAGGGTTAAGGTGTTGTGTGAG
ACGATGATGAGGACGGGGAGTGGAGGGTGGATGGATGCGTACGTAAAGGC
ACGCAGAGGCAAGGTAGAGATGGCTGTGAGGTTATTCTTGGAAAAGCAGC
AGAAGCTGATGACCACGGGTGCTGGCGGAGGAGGGGGGGGGGAGGAGGAG
GAGGAGGAGGGGAGGGGGGGAGGCTACAGGATGTACTCCTCCACCAGGCC
CTCTCTCAGGGTCTAG
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protein sequence of NO18G02110.1

>NO18G02110.1-protein ID=NO18G02110.1-protein|Name=NO18G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MSSTLVDDGDALAQSLQTMSASLETHHRSTTDILSILLKIDTRLSSLEAN
MSPIRHVTEQLTLAEQNVISSYNCMKEVHEHFRVANIADTVLRKGLAPSS
VPSPSSTSTIIIEEESSSVGAYVEVVERVQESLAFLRRNHKMKSAESATR
QLELKQQRLLTDIKNEISRLLSSGSTCIIHSSSIPTSSSLPVPPSSVYEH
GEPIGMSLARRVKVLCETMMRTGSGGWMDAYVKARRGKVEMAVRLFLEKQ
QKLMTTGAGGGGGGEEEEEEGRGGGYRMYSSTRPSLRV*
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mRNA from alignment at chr18:672055..673324+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02110.1 ID=NO18G02110.1|Name=NO18G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1270bp|location=Sequence derived from alignment at chr18:672055..673324+ (Nannochloropsis oceanica)
ACAACAGGCAAGAAAGAGCAAGGGTATAAGGGACTTGATACGATTTCCGT
AGCTGTCCCTCCATCGAGCCATCTAGGCCTCTCCAACTTGCCGCCGCGGC
ATCATCATTATCAAGCTCACGAAGCCTACTAGGGCGCGCAGAGGCAGCCA
TGAGCAGTACACTTGTGGACGACGGGGATGCCTTGGCGCAAAGCCTCCAA
ACCATGAGTGCTTCCCTCGAGGTATGTGAAGATGTGGATGTGAATGGCAC
TGCTTGTTAGTCCCAGGATGTCAAGTGCTTGGCTTGCCCGTCTGCCACCT
TGTCCAGGCCCTCTCGTGCATATGGTCCATGTGACAGGGCCCCGTCTTCC
CTCCCAATCTCTGCACCCAGAAATTTTATCGTGACGAACGTACGGCCATT
GCTACCACCAGCTGTATATACATCCATCTGATAATTCCCCATCCCTGCAT
CCCAAAATCTCTCTCCCCTCCCCAGACCCACCATAGGTCGACCACCGACA
TCCTCTCGATTCTCCTCAAAATCGACACCCGTCTCAGCAGCCTCGAAGCC
AACATGTCGCCCATTCGCCACGTTACGGAGCAACTAACACTGGCCGAGCA
GAACGTCATCTCCTCCTACAACTGCATGAAAGAGGTCCATGAGCACTTCC
GGGTCGCCAATATAGCAGACACCGTTCTCCGCAAGGGCCTTGCCCCGTCC
TCCGTCCCTTCCCCCTCCTCCACCTCTACCATTATAATCGAAGAGGAGAG
TAGCAGCGTAGGGGCATATGTAGAGGTGGTGGAGCGCGTGCAAGAGTCCC
TGGCGTTTCTGCGTCGCAACCACAAGATGAAGTCCGCCGAGAGTGCCACG
AGGCAGTTGGAGCTGAAACAACAACGGCTCCTAACAGACATTAAAAACGA
AATCTCTCGATTGCTCTCTTCTGGTTCAACCTGTATCATTCATTCGTCAT
CAATCCCTACTTCGTCCTCCCTCCCTGTCCCGCCGTCATCGGTCTACGAG
CATGGGGAGCCCATTGGCATGTCCTTGGCGAGGAGGGTTAAGGTGTTGTG
TGAGACGATGATGAGGACGGGGAGTGGAGGGTGGATGGATGCGTACGTAA
AGGCACGCAGAGGCAAGGTAGAGATGGCTGTGAGGTTATTCTTGGAAAAG
CAGCAGAAGCTGATGACCACGGGTGCTGGCGGAGGAGGGGGGGGGGAGGA
GGAGGAGGAGGAGGGGAGGGGGGGAGGCTACAGGATGTACTCCTCCACCA
GGCCCTCTCTCAGGGTCTAG
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Coding sequence (CDS) from alignment at chr18:672055..673324+

>NO18G02110.1 ID=NO18G02110.1|Name=NO18G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr18:672055..673324+ (Nannochloropsis oceanica)
ATGAGCAGTACACTTGTGGACGACGGGGATGCCTTGGCGCAAAGCCTCCA
AACCATGAGTGCTTCCCTCGAGACCCACCATAGGTCGACCACCGACATCC
TCTCGATTCTCCTCAAAATCGACACCCGTCTCAGCAGCCTCGAAGCCAAC
ATGTCGCCCATTCGCCACGTTACGGAGCAACTAACACTGGCCGAGCAGAA
CGTCATCTCCTCCTACAACTGCATGAAAGAGGTCCATGAGCACTTCCGGG
TCGCCAATATAGCAGACACCGTTCTCCGCAAGGGCCTTGCCCCGTCCTCC
GTCCCTTCCCCCTCCTCCACCTCTACCATTATAATCGAAGAGGAGAGTAG
CAGCGTAGGGGCATATGTAGAGGTGGTGGAGCGCGTGCAAGAGTCCCTGG
CGTTTCTGCGTCGCAACCACAAGATGAAGTCCGCCGAGAGTGCCACGAGG
CAGTTGGAGCTGAAACAACAACGGCTCCTAACAGACATTAAAAACGAAAT
CTCTCGATTGCTCTCTTCTGGTTCAACCTGTATCATTCATTCGTCATCAA
TCCCTACTTCGTCCTCCCTCCCTGTCCCGCCGTCATCGGTCTACGAGCAT
GGGGAGCCCATTGGCATGTCCTTGGCGAGGAGGGTTAAGGTGTTGTGTGA
GACGATGATGAGGACGGGGAGTGGAGGGTGGATGGATGCGTACGTAAAGG
CACGCAGAGGCAAGGTAGAGATGGCTGTGAGGTTATTCTTGGAAAAGCAG
CAGAAGCTGATGACCACGGGTGCTGGCGGAGGAGGGGGGGGGGAGGAGGA
GGAGGAGGAGGGGAGGGGGGGAGGCTACAGGATGTACTCCTCCACCAGGC
CCTCTCTCAGGGTCTAG
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Synonyms
Publications