NO18G02090, NO18G02090 (gene) Nannochloropsis oceanica

Overview
NameNO18G02090
Unique NameNO18G02090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2210
Alignment locationchr18:663374..665583 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeptidase m48 ste24p
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:663374..665583 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0071586CAAX-box protein processing
GO:0006508proteolysis
GO:0019538protein metabolic process
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
GO:0004222metalloendopeptidase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR027057CAXX_Prtase_1
IPR001915Peptidase_M48
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO18G02090 vs. NCBI_GenBank
Match: EWM23403.1 (peptidase m48 ste24p [Nannochloropsis gaditana])

HSP 1 Score: 464.5 bits (1194), Expect = 3.400e-127
Identity = 233/280 (83.21%), Postives = 258/280 (92.14%), Query Frame = 0
Query:  124 ARVILKGLQADRFRHPLDQQVTEQLRMIPGLEWVVRRVMTVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILDLPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAHELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLSNMLFAWLRAAELSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQAGGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIVGRGVLMKEEEG 404
            ARVILKGL+ADRFRHPLDQQ+TEQLR++PGLEW VR+ M VLEEAVY+DNISSAILVGPTQMPSLH+SLVEAASILDLP+LPELYIKQSPVPNAYCMAIQGRRPFIV+HTSL+DLL+PAE+QVVLAHEL+HIKCEHGVFITAANALA+GLYS+GGSLGR+LGDRLS++L+AWLRAAE SCDRGALLV+QDLD VLSALLKLVGGSQ L GQLSTEAFLQQARSYDQA G  LGR ++ Q+E GLTHPLPVLRVRELERWY S+MY GI+ RG     E G
Sbjct:  106 ARVILKGLRADRFRHPLDQQITEQLRLLPGLEWGVRQAMRVLEEAVYIDNISSAILVGPTQMPSLHSSLVEAASILDLPVLPELYIKQSPVPNAYCMAIQGRRPFIVVHTSLLDLLSPAEVQVVLAHELSHIKCEHGVFITAANALALGLYSLGGSLGRLLGDRLSSLLYAWLRAAEFSCDRGALLVSQDLDTVLSALLKLVGGSQQLAGQLSTEAFLQQARSYDQAVGSPLGRLIKSQMEPGLTHPLPVLRVRELERWYKSDMYTGIIARGSRRAVETG 385          
BLAST of NO18G02090 vs. NCBI_GenBank
Match: XP_019185652.1 (PREDICTED: uncharacterized protein LOC109180488 isoform X1 [Ipomoea nil])

HSP 1 Score: 285.8 bits (730), Expect = 2.200e-73
Identity = 148/274 (54.01%), Postives = 198/274 (72.26%), Query Frame = 0
Query:  124 ARVILKGLQADRFRHPLDQQVTEQLRMIPGLEWVVRRVM-TVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILDLPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAHELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLSNMLFAWLRAAELSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQAGGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIVGRGV 397
            A V+ + L AD FRHPLD+Q T  LR IPGL  V + ++ TV E+ ++L+NI +++LV   Q+P LH  +VEAA IL +   P+LY++QSPVPNAY +AI G++PF+V+HTSL++LLT  E+Q VLAHEL H+KC+HGV++T AN L +G YS+ G LG ++  RL   LF WLRAAEL+CDR ALLVAQD  VV+S L+KL GGS SL  QL+ +AFL+QARSYDQA    +G ++R      L+HPLPVLR RE++ W  S+ Y  +V R +
Sbjct:   57 ASVVFRDLDADDFRHPLDRQNTLLLRAIPGLNEVGKALLGTVSEQVMFLENIGTSLLVSENQLPELHQLMVEAAKILSIE-TPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTVANILTLGAYSLPG-LGGLIAQRLEEQLFRWLRAAELTCDRAALLVAQDPKVVVSVLMKLAGGSPSLADQLNVDAFLEQARSYDQASSTPVGWYIRNAQTRQLSHPLPVLRAREIDEWSRSQEYQYLVKRAM 328          
BLAST of NO18G02090 vs. NCBI_GenBank
Match: PRW39220.1 (Peptidase family M48 family [Chlorella sorokiniana])

HSP 1 Score: 284.3 bits (726), Expect = 6.300e-73
Identity = 149/277 (53.79%), Postives = 202/277 (72.92%), Query Frame = 0
Query:  129 KGLQADRFRHPLDQQVTEQLRMIPGLEWVVRRVM-TVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILDLPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAHELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLSNMLFAWLRAAELSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQAGGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIVGRGVLMKEEEGG 405
            +GL A +F+HPLDQQ T  LR +PGLE V R +M  V E+ + L+NI +++ VGPTQ+P+LH  L EAA+IL +  +P+LY++Q+P+PNAY +AI GR+PFIV+HT+L+DLLTPAE+Q VLAHEL H+KC+HGV++TAAN LA+G      SL  I+   +   L  WLRAAEL+CDR ALLVAQD  VV+S L+KL GGS S  G+L+ +AFL+QARSYD+A    +G +LR      L+HPLPVLR RE++RW +S+ +  +V    L ++  GG
Sbjct:   99 RGLSAAQFQHPLDQQNTALLRALPGLEMVARNMMGPVAEKVLLLENIGTSVKVGPTQLPTLHHLLTEAAAILQME-VPDLYVRQNPLPNAYTLAIAGRKPFIVLHTALLDLLTPAEVQAVLAHELGHLKCDHGVWLTAANVLALGTV----SLLPIVSSAVEEGLMRWLRAAELTCDRAALLVAQDPKVVISVLMKLAGGSPSFAGELNIDAFLEQARSYDEATNSPVGWYLRNAQTRALSHPLPVLRAREVDRWAHSQQFQALVAAN-LPRDANGG 369          
BLAST of NO18G02090 vs. NCBI_GenBank
Match: XP_005846047.1 (hypothetical protein CHLNCDRAFT_25372, partial [Chlorella variabilis] >EFN53945.1 hypothetical protein CHLNCDRAFT_25372, partial [Chlorella variabilis])

HSP 1 Score: 278.9 bits (712), Expect = 2.600e-71
Identity = 144/265 (54.34%), Postives = 195/265 (73.58%), Query Frame = 0
Query:  129 KGLQADRFRHPLDQQVTEQLRMIPGLEWVVRRVM-TVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILDLPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAHELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLSNMLFAWLRAAELSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQAGGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIV 393
            +GL A +F+HPLDQQ T  LR++PGLE V R +M  V E+ + L+NI ++I  GP Q+PSLH  L EAA++L +   P+LY++Q+P+PNAY +AI GR PFIV+HT+L++LLTPAE+Q VLAHEL H+KC+HGV++TAAN LA+G      SL  ++   +   L  WLRAAEL+CDR ALLVAQD  VV+SAL+KL GGS SL G+L+ +AFL+QARSYD+A    +G +LR      L+HPLPV+R RE++RW  SE +  ++
Sbjct:    2 RGLSAAQFQHPLDQQNTALLRVLPGLELVARNLMGPVAEQVLLLENIGTSIKAGPDQLPSLHRLLTEAAAMLQME-APDLYVRQNPLPNAYTLAIAGRTPFIVVHTALLELLTPAEVQAVLAHELGHLKCDHGVWLTAANVLALGTV----SLLPVVSSAVEEGLLRWLRAAELTCDRAALLVAQDSKVVVSALMKLAGGSPSLAGELNIDAFLRQARSYDEATASPVGWYLRNAQTRALSHPLPVMRAREIDRWAQSEQFRALL 261          
BLAST of NO18G02090 vs. NCBI_GenBank
Match: XP_003547648.1 (PREDICTED: protease HtpX homolog isoform X1 [Glycine max] >KRH06946.1 hypothetical protein GLYMA_16G056900 [Glycine max])

HSP 1 Score: 278.9 bits (712), Expect = 2.600e-71
Identity = 143/280 (51.07%), Postives = 200/280 (71.43%), Query Frame = 0
Query:  121 KAKARVILKGLQADRFRHPLDQQVTEQLRMIPGLEWVVRRVM-TVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILDLPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAHELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLSNMLFAWLRAAELSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQAGGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIVGRGVLMK 400
            +A + V+ + L AD FRHPLDQQ T  LR IPGL  + + ++ TV E+ + L+NI +++LV   Q+P L+  +VEAA IL++   P+LY++QSPVPNAY +AI G+RPF+V+HTSL++LLT AE+Q VLAHEL H+KC+HGV++T AN L +G YSV G +G ++   L   LF WLRAAEL+CDR ALLVAQD  VV+S L+KL GG  S+  QL+ +AFL+QARSY++A    +G ++R      L+HPLPVLR  E++ W  +  Y  ++ RG+ +K
Sbjct:   51 RAGSAVVFRDLDADDFRHPLDQQNTLLLRAIPGLNELGKALLGTVSEQVMLLENIGTSVLVSKNQLPDLYHLMVEAAEILNVD-APDLYVRQSPVPNAYTLAISGKRPFVVIHTSLVELLTKAELQAVLAHELGHLKCDHGVWLTYANILTLGAYSVPG-IGGMIAQTLEEQLFRWLRAAELTCDRAALLVAQDPKVVISVLMKLAGGCPSMADQLNVDAFLEQARSYEKAASSPIGWYIRNAQTRQLSHPLPVLRASEIDEWSRTPAYKSLLKRGIQIK 328          
BLAST of NO18G02090 vs. NCBI_GenBank
Match: PNW73136.1 (hypothetical protein CHLRE_14g620150v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 278.5 bits (711), Expect = 3.400e-71
Identity = 146/269 (54.28%), Postives = 192/269 (71.38%), Query Frame = 0
Query:  127 ILKGLQADRFRHPLDQQVTEQLRMIPGLEWVVRRVM-TVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILDLPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAHELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLSNMLFAWLRAAELSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQAGGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIVGR 395
            + +GLQ D FRHPLDQQ T  LR +PGLE V +  M  V E+ + L+NIS++I +GP Q+PS+H  LV+AA IL +   PELY++Q PVPNAY +AI G +PFIV+HT+L++LLTP E+Q VLAHEL H+KC+HG+++T AN LA G  SV   L  + G  +   L  WLRAAEL+CDR ALLVAQD  VV+SAL+KL GGS S   +L+ +AFLQQ+RSY++A    LG +LR      L+HPLPV+R RE++RW  S  Y G+V +
Sbjct:   70 MFEGLQGDDFRHPLDQQNTSMLRAVPGLEMVAKNFMGPVAEQVLLLENISTSIKIGPEQLPSIHKLLVDAARILQME-PPELYVRQHPVPNAYTLAIAGHKPFIVIHTALLELLTPYELQAVLAHELGHLKCDHGLWLTVANVLASGTVSV---LPVVTG-MVQEALLRWLRAAELTCDRAALLVAQDPKVVISALMKLAGGSPSFASELNVDAFLQQSRSYEEATNSLLGWYLRNAQTAALSHPLPVMRAREIDRWSQSTQYKGLVSK 333          
BLAST of NO18G02090 vs. NCBI_GenBank
Match: PSC71911.1 (protease-like protein isoform X1 [Micractinium conductrix])

HSP 1 Score: 278.5 bits (711), Expect = 3.400e-71
Identity = 144/265 (54.34%), Postives = 193/265 (72.83%), Query Frame = 0
Query:  129 KGLQADRFRHPLDQQVTEQLRMIPGLEWVVRRVM-TVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILDLPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAHELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLSNMLFAWLRAAELSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQAGGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIV 393
            +GL A +F HPLD+Q T  LR +PGLE + R  M  V E+ + L+NI +++L GP Q+PSLH  L EAA +L +   P+LY++Q+PVPNAY +AI GR+PF+VMHT+L++LL+PAE+Q VLAHEL H+KC+HGV++TAAN LA+G      SL  ++   +   L  WLRAAEL+CDR ALLVAQD  VV+SAL+KL GGS +L G+LS +AFL+QARSYD+A    +G +LR      L+HPLPVLR RE++RW  S+ Y  +V
Sbjct:   70 RGLSASQFMHPLDKQNTALLRALPGLELLARNFMGPVAEQVLMLENIGTSVLAGPDQLPSLHKLLTEAAGMLGME-APDLYVRQNPVPNAYTLAIAGRKPFVVMHTALLELLSPAEVQAVLAHELGHLKCDHGVWLTAANVLALGTV----SLLPVVSAAVEEGLLRWLRAAELTCDRAALLVAQDSRVVVSALMKLAGGSPALAGELSVDAFLRQARSYDEATSSPVGWYLRNAQTRALSHPLPVLRAREIDRWSQSQQYQELV 329          
BLAST of NO18G02090 vs. NCBI_GenBank
Match: CBN74979.1 (putative peptidase [Ectocarpus siliculosus])

HSP 1 Score: 277.7 bits (709), Expect = 5.900e-71
Identity = 142/269 (52.79%), Postives = 192/269 (71.38%), Query Frame = 0
Query:  130 GLQADRFRHPLDQQVTEQLRMIPGLEWVVRRVMTVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILDLPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAHELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLS--NMLFAWLRAAELSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQAGGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIVGRGV 397
            GL ADRF+HP D + T  LR  PGLE  +R  +  +E+AV++DNI+++ILVGP QM SLH  L+EA  ILD+   P+LYI+Q+P PNAY +AI+G++PFIV+HTSL+DL+ P E+Q V+AHEL H+KCEHG+++T A  +A GLY   G LG  + DRL     L  W RAAE +CDR A+LVAQD++VV+S LLKL GGS S   +LS   FL+QA +YD A    +G+ L+++  + LTHPLPV+R REL ++  S  Y G+V RG+
Sbjct:  125 GLLADRFQHPFDLEATGMLRRFPGLEMAIRGAVPAIEDAVFMDNIANSILVGPRQMASLHGLLLEACRILDMQ-PPDLYIRQNPTPNAYTLAIRGKKPFIVLHTSLLDLMEPEEVQAVIAHELGHLKCEHGIWVTLATVVANGLYG-RGFLGAFVADRLGLRRRLMRWSRAAEFTCDRAAMLVAQDVNVVVSTLLKLAGGSVSQASELSVPEFLKQASAYDLASQTRIGKLLKREQSLELTHPLPVVRARELVKFSESPQYLGLVRRGL 391          
BLAST of NO18G02090 vs. NCBI_GenBank
Match: OAE25738.1 (hypothetical protein AXG93_4368s1980 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 277.7 bits (709), Expect = 5.900e-71
Identity = 144/272 (52.94%), Postives = 196/272 (72.06%), Query Frame = 0
Query:  124 ARVILKGLQADRFRHPLDQQVTEQLRMIPGLEWVVRRVM-TVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILDLPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAHELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLSNMLFAWLRAAELSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQAGGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIVGR 395
            A V    LQAD FRHPLD+Q T  LR IPGL  V + ++ +  E+ + L+NI +++LVG  Q+  LH  +V AA+ILDL   P+LY++Q+PVPNAY +A+ GR+PF+V+HTSL++LLTPAE+Q VLAHEL H+KC+HG+++T AN +AMG YS+ G LG  L   L   L  W+RAAEL+CDR ALLVAQD +VV+S L+KL GG  SL+GQL+ +AFL+QARSY++A    LG +LR      L+HPLPVLR  E+++W  S  Y  ++ +
Sbjct:  225 AVVAFPDLQADDFRHPLDRQNTTLLRAIPGLSEVGKFLLGSTAEQVMLLENIGTSVLVGENQLSDLHRLMVNAANILDLE-TPDLYVRQNPVPNAYTLAVSGRKPFVVIHTSLVELLTPAELQAVLAHELGHLKCDHGIWLTFANIVAMGAYSLPG-LGAFLARNLEEQLMRWVRAAELTCDRAALLVAQDPEVVISVLMKLAGGCPSLSGQLNVDAFLKQARSYEEASQSPLGWYLRNAQTRQLSHPLPVLRALEIDQWSRSAEYKALLSQ 494          
BLAST of NO18G02090 vs. NCBI_GenBank
Match: PTQ41716.1 (hypothetical protein MARPO_0033s0112 [Marchantia polymorpha])

HSP 1 Score: 277.7 bits (709), Expect = 5.900e-71
Identity = 144/272 (52.94%), Postives = 196/272 (72.06%), Query Frame = 0
Query:  124 ARVILKGLQADRFRHPLDQQVTEQLRMIPGLEWVVRRVM-TVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILDLPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAHELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLSNMLFAWLRAAELSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQAGGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIVGR 395
            A V    LQAD FRHPLD+Q T  LR IPGL  V + ++ +  E+ + L+NI +++LVG  Q+  LH  +V AA+ILDL   P+LY++Q+PVPNAY +A+ GR+PF+V+HTSL++LLTPAE+Q VLAHEL H+KC+HG+++T AN +AMG YS+ G LG  L   L   L  W+RAAEL+CDR ALLVAQD +VV+S L+KL GG  SL+GQL+ +AFL+QARSY++A    LG +LR      L+HPLPVLR  E+++W  S  Y  ++ +
Sbjct:   48 AVVAFPDLQADDFRHPLDRQNTTLLRAIPGLSEVGKFLLGSTAEQVMLLENIGTSVLVGENQLSDLHRLMVNAANILDLE-TPDLYVRQNPVPNAYTLAVSGRKPFVVIHTSLVELLTPAELQAVLAHELGHLKCDHGIWLTFANIVAMGAYSLPG-LGAFLARNLEEQLMRWVRAAELTCDRAALLVAQDPEVVISVLMKLAGGCPSLSGQLNVDAFLKQARSYEEASQSPLGWYLRNAQTRQLSHPLPVLRALEIDQWSRSAEYKALLSQ 317          
The following BLAST results are available for this feature:
BLAST of NO18G02090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23403.13.400e-12783.21peptidase m48 ste24p [Nannochloropsis gaditana][more]
XP_019185652.12.200e-7354.01PREDICTED: uncharacterized protein LOC109180488 is... [more]
PRW39220.16.300e-7353.79Peptidase family M48 family [Chlorella sorokiniana... [more]
XP_005846047.12.600e-7154.34hypothetical protein CHLNCDRAFT_25372, partial [Ch... [more]
XP_003547648.12.600e-7151.07PREDICTED: protease HtpX homolog isoform X1 [Glyci... [more]
PNW73136.13.400e-7154.28hypothetical protein CHLRE_14g620150v5 [Chlamydomo... [more]
PSC71911.13.400e-7154.34protease-like protein isoform X1 [Micractinium con... [more]
CBN74979.15.900e-7152.79putative peptidase [Ectocarpus siliculosus][more]
OAE25738.15.900e-7152.94hypothetical protein AXG93_4368s1980 [Marchantia p... [more]
PTQ41716.15.900e-7152.94hypothetical protein MARPO_0033s0112 [Marchantia p... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004068NSK004068Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02090.1NO18G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673756gene_8906Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100077g5gene7041Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02090.1NO18G02090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02090 ID=NO18G02090|Name=NO18G02090|organism=Nannochloropsis oceanica|type=gene|length=2210bp
ATATGCAAAACCCTTCAATATACTATGCAGGCCCTGCAGGCTTGATTAAT
GTCAAGGATTAGGTGCCTGCCTGCCCTTTTTTGGGGGGGCAGGCGGCCGT
GGAACATTGAGAGGGAAGTCGGGTGGGCCGAACGGGCAAACGGAAACGCA
GCTGTCTCGCTCTACTTGGGAGCATCATTCCTCCTGACTCACCATAGTGT
TCAAGTGCGGCACTGGGACAACGTCTCTTTTCCCCTGCATACGATCTAGT
GCCACCCTAATGCATCCCTCACACCGTTTTTGCCGCATCTAGAAAACAGG
CTGCCCGACTCGGATTCCTGTATCACACATCTTGCCTTAGGAGCACTTGC
CTTTGTCAGTGCGGGAGCAAGAAGGAACAATCGGACTCGGATGCAGTTGC
CATTGCCGCTTCAGGTACCGCCGCACCACCCACCCACCTCGCGGCGTCAT
TTTTCCGCAGCAGTATTAGGAGTAAGAAGAGTAGCAGAACCCATGCGCCG
CCGCCACGGTGTGTGCGTGGTGTTCTTGGCTACAGCGGCTGTCTTGACGG
CATGTCTTCTGACAGAAGGCCCCCGACCGGCCCACGCCTTTGTGTTGCGT
CCGCCGATGGCACTTTTTCCCTCCTCCCCGCTGCAGCGCGTTCCTCAGAA
AGAGCAAGAGCTTGCCACAAGAAGATTCGCCACAACCTCTAATCCTGCTC
CTCCTCCTGCGGCGGCTGCTGCCACTGCTGCCGCCCCCGCTGGCCCAGAA
AAAGCCAAGGCACGTGTCATCCTCAAGGGTCTGCAAGCCGACCGATTCCG
GCACCCTCTCGACCAGCAGGTCACGGAGCAGgtgtgttaccttgtgtgat
gatgaatctaacgacggggatggatgcgagagactgatttaaacgttatc
acttacctttctcttcctccttccctccatcctcttcctccgctcccagC
TGCGCATGATCCCGGGACTTGAGTGGGTCGTCCGTCGTGTGATGACAGTC
TTGGAAGAAGCCGTCTACCTCGATAATATTTCGAGTGCCATCCTTGTAGG
CCCTACACAGATGCCCTCCCTCCACGCCTCCCTCGTGGAAGCTGCCAGCA
TTCTCGACTTGCCTTTACTGCCAGAATTATACATCAAACAAAGTCCGGTG
CCCAATGCCTACTGCATGgtacgcccccttagctttcctctttccctgct
tcttttgggaatgcactcttcaatattcttccctcttggaacgaccttcg
gatgtattcctctccgtgtccctgtcattacctccgcttccctccctccc
tccctacctctctcccgcagGCAATCCAAGGCCGACGCCCCTTTATCGTC
ATGCACACCTCCCTCATCGACCTCCTCACCCCCGCCGAGATCCAAGTCGT
CCTCGCGCACGAACTCACGCACATCAAATGCGAGCACGGGGTGTTCATCA
CAGCAGCCAACGCCCTTGCCATGGGCCTCTACTCTGTCGGCGGTTCTCTT
GGCCGCATCCTGGGCGACCGTCTTTCGAACATGTTATTCGCATGGCTACG
CGCGGCAGAATTATCGTGCGATCGAGGGGCGTTGCTGGTAGCGCAGGACC
TGGACGTCGTACTGAGTGCATTGTTAAAGCTAGTGGGAGGGAGCCAGAGC
CTCAACGGACAGCTTTCAACGGAAGCGTTTCTGCAACAGGCAAGGAGTTA
CGACCAGGCGGGGGGGAGGGGGTTGGGGAGGTTTCTGAGGCAGCAGTTGG
AGGTGGGCTTGACGCACCCTTTGCCTGTCTTACGGGTGCGAGAGCTAGAG
AGATGGTATAACAGTGAGATGTATGGAGGGATAGTGGGGAGGGGAGTGCT
GATGAAGGAGGAGGAGGGGGGAAAGGAGGACGAGATGGAAAAGGAAGCTG
TGGTTGGTGTATAAAAGTATACGCGAGTTAGGAATCAGTTGGGCGGAATG
ACTTCTGTTTTTTGTTTTCCCCTCTCTGTGCACGGTGTGGTGTTTGATGC
TGCTGCTGGTGTTGAGGGTGAAGGAAGGGGGGAAGGAGTGTAGGAACGAG
GTGATATGTGAGGGCACAAGGGATGGAAAGGTCTGGAGAGAGAGGAGAAG
GAGGGAAAGAAGGAGGGGAGGAAGAGGGAGGTTTGTAAAGAAGTGAAAAA
GAATGAGAAAGACGAGAATAACAAGGATGAGAAAGAAGTCTTCCGACTTG
CAGCTTCGAG
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protein sequence of NO18G02090.1

>NO18G02090.1-protein ID=NO18G02090.1-protein|Name=NO18G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MQLPLPLQVPPHHPPTSRRHFSAAVLGVRRVAEPMRRRHGVCVVFLATAA
VLTACLLTEGPRPAHAFVLRPPMALFPSSPLQRVPQKEQELATRRFATTS
NPAPPPAAAAATAAAPAGPEKAKARVILKGLQADRFRHPLDQQVTEQLRM
IPGLEWVVRRVMTVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILD
LPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAH
ELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLSNMLFAWLRAAE
LSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQA
GGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIVGRGVLMKE
EEGGKEDEMEKEAVVGV*
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Synonyms
Publications