NO18G02090.1, NO18G02090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02090.1
Unique NameNO18G02090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1940
Alignment locationchr18:663374..665583 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:663374..665583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02090.1 vs.
Match: EWM23403.1 (peptidase m48 ste24p [Nannochloropsis gaditana])

HSP 1 Score: 464.5 bits (1194), Expect = 3.400e-127
Identity = 267/404 (66.09%), Postives = 301/404 (74.50%), Query Frame = 0 
Query:   15 PTSRRHFSAAVLGVRRVAEPMRRRHGVCVVFLATAAVLTACLLTEGPRPAHAFVLRPPMALFPSSPLQRVPQKEQELATRRFATTSNPAPPPAAAAATAAAPAGPEKAK---------ARVILKGLQADRFRHPLDQQVTEQLRMIPGLEWVVRRVMTVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILDLPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAHELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLSNMLFAWLRAAELSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQAGGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIVGRG---VLMKEEEGGKE 407
            P +R  FS    G      PMR  H  CV  LA + V  A       + A  F LR    L PS+             T  F T        A   A+A AP   EKA          ARVILKGL+ADRFRHPLDQQ+TEQLR++PGLEW VR+ M VLEEAVY+DNISSAILVGPTQMPSLH+SLVEAASILDLP+LPELYIKQSPVPNAYCMAIQGRRPFIV+HTSL+DLL+PAE+QVVLAHEL+HIKCEHGVFITAANALA+GLYS+GGSLGR+LGDRLS++L+AWLRAAE SCDRGALLV+QDLD VLSALLKLVGGSQ L GQLSTEAFLQQARSYDQA G  LGR ++ Q+E GLTHPLPVLRVRELERWY S+MY GI+ RG    +   ++GG+E
Sbjct:    2 PETRHEFSENPYGG---TFPMRLAHFSCVC-LAISVVAFA-------QSAQGFTLRQKTVLPPSTSTFSTSCAPW---TGHFFTAKVTPRTTARVTASAVAPVHREKANDAVTVPSSPARVILKGLRADRFRHPLDQQITEQLRLLPGLEWGVRQAMRVLEEAVYIDNISSAILVGPTQMPSLHSSLVEAASILDLPVLPELYIKQSPVPNAYCMAIQGRRPFIVVHTSLLDLLSPAEVQVVLAHELSHIKCEHGVFITAANALALGLYSLGGSLGRLLGDRLSSLLYAWLRAAEFSCDRGALLVSQDLDTVLSALLKLVGGSQQLAGQLSTEAFLQQARSYDQAVGSPLGRLIKSQMEPGLTHPLPVLRVRELERWYKSDMYTGIIARGSRRAVETGQDGGRE 391
The following BLAST results are available for this feature:
BLAST of NO18G02090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23403.13.400e-12766.09peptidase m48 ste24p [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02090NO18G02090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02090.1NO18G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02090.1.cds1NO18G02090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02090.1.cds2NO18G02090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02090.1.cds3NO18G02090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02090.1 ID=NO18G02090.1|Name=NO18G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1940bp
ATATGCAAAACCCTTCAATATACTATGCAGGCCCTGCAGGCTTGATTAAT
GTCAAGGATTAGGTGCCTGCCTGCCCTTTTTTGGGGGGGCAGGCGGCCGT
GGAACATTGAGAGGGAAGTCGGGTGGGCCGAACGGGCAAACGGAAACGCA
GCTGTCTCGCTCTACTTGGGAGCATCATTCCTCCTGACTCACCATAGTGT
TCAAGTGCGGCACTGGGACAACGTCTCTTTTCCCCTGCATACGATCTAGT
GCCACCCTAATGCATCCCTCACACCGTTTTTGCCGCATCTAGAAAACAGG
CTGCCCGACTCGGATTCCTGTATCACACATCTTGCCTTAGGAGCACTTGC
CTTTGTCAGTGCGGGAGCAAGAAGGAACAATCGGACTCGGATGCAGTTGC
CATTGCCGCTTCAGGTACCGCCGCACCACCCACCCACCTCGCGGCGTCAT
TTTTCCGCAGCAGTATTAGGAGTAAGAAGAGTAGCAGAACCCATGCGCCG
CCGCCACGGTGTGTGCGTGGTGTTCTTGGCTACAGCGGCTGTCTTGACGG
CATGTCTTCTGACAGAAGGCCCCCGACCGGCCCACGCCTTTGTGTTGCGT
CCGCCGATGGCACTTTTTCCCTCCTCCCCGCTGCAGCGCGTTCCTCAGAA
AGAGCAAGAGCTTGCCACAAGAAGATTCGCCACAACCTCTAATCCTGCTC
CTCCTCCTGCGGCGGCTGCTGCCACTGCTGCCGCCCCCGCTGGCCCAGAA
AAAGCCAAGGCACGTGTCATCCTCAAGGGTCTGCAAGCCGACCGATTCCG
GCACCCTCTCGACCAGCAGGTCACGGAGCAGCTGCGCATGATCCCGGGAC
TTGAGTGGGTCGTCCGTCGTGTGATGACAGTCTTGGAAGAAGCCGTCTAC
CTCGATAATATTTCGAGTGCCATCCTTGTAGGCCCTACACAGATGCCCTC
CCTCCACGCCTCCCTCGTGGAAGCTGCCAGCATTCTCGACTTGCCTTTAC
TGCCAGAATTATACATCAAACAAAGTCCGGTGCCCAATGCCTACTGCATG
GCAATCCAAGGCCGACGCCCCTTTATCGTCATGCACACCTCCCTCATCGA
CCTCCTCACCCCCGCCGAGATCCAAGTCGTCCTCGCGCACGAACTCACGC
ACATCAAATGCGAGCACGGGGTGTTCATCACAGCAGCCAACGCCCTTGCC
ATGGGCCTCTACTCTGTCGGCGGTTCTCTTGGCCGCATCCTGGGCGACCG
TCTTTCGAACATGTTATTCGCATGGCTACGCGCGGCAGAATTATCGTGCG
ATCGAGGGGCGTTGCTGGTAGCGCAGGACCTGGACGTCGTACTGAGTGCA
TTGTTAAAGCTAGTGGGAGGGAGCCAGAGCCTCAACGGACAGCTTTCAAC
GGAAGCGTTTCTGCAACAGGCAAGGAGTTACGACCAGGCGGGGGGGAGGG
GGTTGGGGAGGTTTCTGAGGCAGCAGTTGGAGGTGGGCTTGACGCACCCT
TTGCCTGTCTTACGGGTGCGAGAGCTAGAGAGATGGTATAACAGTGAGAT
GTATGGAGGGATAGTGGGGAGGGGAGTGCTGATGAAGGAGGAGGAGGGGG
GAAAGGAGGACGAGATGGAAAAGGAAGCTGTGGTTGGTGTATAAAAGTAT
ACGCGAGTTAGGAATCAGTTGGGCGGAATGACTTCTGTTTTTTGTTTTCC
CCTCTCTGTGCACGGTGTGGTGTTTGATGCTGCTGCTGGTGTTGAGGGTG
AAGGAAGGGGGGAAGGAGTGTAGGAACGAGGTGATATGTGAGGGCACAAG
GGATGGAAAGGTCTGGAGAGAGAGGAGAAGGAGGGAAAGAAGGAGGGGAG
GAAGAGGGAGGTTTGTAAAGAAGTGAAAAAGAATGAGAAAGACGAGAATA
ACAAGGATGAGAAAGAAGTCTTCCGACTTGCAGCTTCGAG
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protein sequence of NO18G02090.1

>NO18G02090.1-protein ID=NO18G02090.1-protein|Name=NO18G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MQLPLPLQVPPHHPPTSRRHFSAAVLGVRRVAEPMRRRHGVCVVFLATAA
VLTACLLTEGPRPAHAFVLRPPMALFPSSPLQRVPQKEQELATRRFATTS
NPAPPPAAAAATAAAPAGPEKAKARVILKGLQADRFRHPLDQQVTEQLRM
IPGLEWVVRRVMTVLEEAVYLDNISSAILVGPTQMPSLHASLVEAASILD
LPLLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLIDLLTPAEIQVVLAH
ELTHIKCEHGVFITAANALAMGLYSVGGSLGRILGDRLSNMLFAWLRAAE
LSCDRGALLVAQDLDVVLSALLKLVGGSQSLNGQLSTEAFLQQARSYDQA
GGRGLGRFLRQQLEVGLTHPLPVLRVRELERWYNSEMYGGIVGRGVLMKE
EEGGKEDEMEKEAVVGV*
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mRNA from alignment at chr18:663374..665583+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02090.1 ID=NO18G02090.1|Name=NO18G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2210bp|location=Sequence derived from alignment at chr18:663374..665583+ (Nannochloropsis oceanica)
ATATGCAAAACCCTTCAATATACTATGCAGGCCCTGCAGGCTTGATTAAT
GTCAAGGATTAGGTGCCTGCCTGCCCTTTTTTGGGGGGGCAGGCGGCCGT
GGAACATTGAGAGGGAAGTCGGGTGGGCCGAACGGGCAAACGGAAACGCA
GCTGTCTCGCTCTACTTGGGAGCATCATTCCTCCTGACTCACCATAGTGT
TCAAGTGCGGCACTGGGACAACGTCTCTTTTCCCCTGCATACGATCTAGT
GCCACCCTAATGCATCCCTCACACCGTTTTTGCCGCATCTAGAAAACAGG
CTGCCCGACTCGGATTCCTGTATCACACATCTTGCCTTAGGAGCACTTGC
CTTTGTCAGTGCGGGAGCAAGAAGGAACAATCGGACTCGGATGCAGTTGC
CATTGCCGCTTCAGGTACCGCCGCACCACCCACCCACCTCGCGGCGTCAT
TTTTCCGCAGCAGTATTAGGAGTAAGAAGAGTAGCAGAACCCATGCGCCG
CCGCCACGGTGTGTGCGTGGTGTTCTTGGCTACAGCGGCTGTCTTGACGG
CATGTCTTCTGACAGAAGGCCCCCGACCGGCCCACGCCTTTGTGTTGCGT
CCGCCGATGGCACTTTTTCCCTCCTCCCCGCTGCAGCGCGTTCCTCAGAA
AGAGCAAGAGCTTGCCACAAGAAGATTCGCCACAACCTCTAATCCTGCTC
CTCCTCCTGCGGCGGCTGCTGCCACTGCTGCCGCCCCCGCTGGCCCAGAA
AAAGCCAAGGCACGTGTCATCCTCAAGGGTCTGCAAGCCGACCGATTCCG
GCACCCTCTCGACCAGCAGGTCACGGAGCAGGTGTGTTACCTTGTGTGAT
GATGAATCTAACGACGGGGATGGATGCGAGAGACTGATTTAAACGTTATC
ACTTACCTTTCTCTTCCTCCTTCCCTCCATCCTCTTCCTCCGCTCCCAGC
TGCGCATGATCCCGGGACTTGAGTGGGTCGTCCGTCGTGTGATGACAGTC
TTGGAAGAAGCCGTCTACCTCGATAATATTTCGAGTGCCATCCTTGTAGG
CCCTACACAGATGCCCTCCCTCCACGCCTCCCTCGTGGAAGCTGCCAGCA
TTCTCGACTTGCCTTTACTGCCAGAATTATACATCAAACAAAGTCCGGTG
CCCAATGCCTACTGCATGGTACGCCCCCTTAGCTTTCCTCTTTCCCTGCT
TCTTTTGGGAATGCACTCTTCAATATTCTTCCCTCTTGGAACGACCTTCG
GATGTATTCCTCTCCGTGTCCCTGTCATTACCTCCGCTTCCCTCCCTCCC
TCCCTACCTCTCTCCCGCAGGCAATCCAAGGCCGACGCCCCTTTATCGTC
ATGCACACCTCCCTCATCGACCTCCTCACCCCCGCCGAGATCCAAGTCGT
CCTCGCGCACGAACTCACGCACATCAAATGCGAGCACGGGGTGTTCATCA
CAGCAGCCAACGCCCTTGCCATGGGCCTCTACTCTGTCGGCGGTTCTCTT
GGCCGCATCCTGGGCGACCGTCTTTCGAACATGTTATTCGCATGGCTACG
CGCGGCAGAATTATCGTGCGATCGAGGGGCGTTGCTGGTAGCGCAGGACC
TGGACGTCGTACTGAGTGCATTGTTAAAGCTAGTGGGAGGGAGCCAGAGC
CTCAACGGACAGCTTTCAACGGAAGCGTTTCTGCAACAGGCAAGGAGTTA
CGACCAGGCGGGGGGGAGGGGGTTGGGGAGGTTTCTGAGGCAGCAGTTGG
AGGTGGGCTTGACGCACCCTTTGCCTGTCTTACGGGTGCGAGAGCTAGAG
AGATGGTATAACAGTGAGATGTATGGAGGGATAGTGGGGAGGGGAGTGCT
GATGAAGGAGGAGGAGGGGGGAAAGGAGGACGAGATGGAAAAGGAAGCTG
TGGTTGGTGTATAAAAGTATACGCGAGTTAGGAATCAGTTGGGCGGAATG
ACTTCTGTTTTTTGTTTTCCCCTCTCTGTGCACGGTGTGGTGTTTGATGC
TGCTGCTGGTGTTGAGGGTGAAGGAAGGGGGGAAGGAGTGTAGGAACGAG
GTGATATGTGAGGGCACAAGGGATGGAAAGGTCTGGAGAGAGAGGAGAAG
GAGGGAAAGAAGGAGGGGAGGAAGAGGGAGGTTTGTAAAGAAGTGAAAAA
GAATGAGAAAGACGAGAATAACAAGGATGAGAAAGAAGTCTTCCGACTTG
CAGCTTCGAG
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Coding sequence (CDS) from alignment at chr18:663374..665583+

>NO18G02090.1 ID=NO18G02090.1|Name=NO18G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at chr18:663374..665583+ (Nannochloropsis oceanica)
ATGCAGTTGCCATTGCCGCTTCAGGTACCGCCGCACCACCCACCCACCTC
GCGGCGTCATTTTTCCGCAGCAGTATTAGGAGTAAGAAGAGTAGCAGAAC
CCATGCGCCGCCGCCACGGTGTGTGCGTGGTGTTCTTGGCTACAGCGGCT
GTCTTGACGGCATGTCTTCTGACAGAAGGCCCCCGACCGGCCCACGCCTT
TGTGTTGCGTCCGCCGATGGCACTTTTTCCCTCCTCCCCGCTGCAGCGCG
TTCCTCAGAAAGAGCAAGAGCTTGCCACAAGAAGATTCGCCACAACCTCT
AATCCTGCTCCTCCTCCTGCGGCGGCTGCTGCCACTGCTGCCGCCCCCGC
TGGCCCAGAAAAAGCCAAGGCACGTGTCATCCTCAAGGGTCTGCAAGCCG
ACCGATTCCGGCACCCTCTCGACCAGCAGGTCACGGAGCAGCTGCGCATG
ATCCCGGGACTTGAGTGGGTCGTCCGTCGTGTGATGACAGTCTTGGAAGA
AGCCGTCTACCTCGATAATATTTCGAGTGCCATCCTTGTAGGCCCTACAC
AGATGCCCTCCCTCCACGCCTCCCTCGTGGAAGCTGCCAGCATTCTCGAC
TTGCCTTTACTGCCAGAATTATACATCAAACAAAGTCCGGTGCCCAATGC
CTACTGCATGGCAATCCAAGGCCGACGCCCCTTTATCGTCATGCACACCT
CCCTCATCGACCTCCTCACCCCCGCCGAGATCCAAGTCGTCCTCGCGCAC
GAACTCACGCACATCAAATGCGAGCACGGGGTGTTCATCACAGCAGCCAA
CGCCCTTGCCATGGGCCTCTACTCTGTCGGCGGTTCTCTTGGCCGCATCC
TGGGCGACCGTCTTTCGAACATGTTATTCGCATGGCTACGCGCGGCAGAA
TTATCGTGCGATCGAGGGGCGTTGCTGGTAGCGCAGGACCTGGACGTCGT
ACTGAGTGCATTGTTAAAGCTAGTGGGAGGGAGCCAGAGCCTCAACGGAC
AGCTTTCAACGGAAGCGTTTCTGCAACAGGCAAGGAGTTACGACCAGGCG
GGGGGGAGGGGGTTGGGGAGGTTTCTGAGGCAGCAGTTGGAGGTGGGCTT
GACGCACCCTTTGCCTGTCTTACGGGTGCGAGAGCTAGAGAGATGGTATA
ACAGTGAGATGTATGGAGGGATAGTGGGGAGGGGAGTGCTGATGAAGGAG
GAGGAGGGGGGAAAGGAGGACGAGATGGAAAAGGAAGCTGTGGTTGGTGT
ATAA
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Synonyms
Publications