NO18G02040, NO18G02040 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G02040 vs. NCBI_GenBank
Match: EWM23411.1 (hypothetical protein Naga_100077g12 [Nannochloropsis gaditana]) HSP 1 Score: 411.8 bits (1057), Expect = 5.500e-111 Identity = 371/780 (47.56%), Postives = 436/780 (55.90%), Query Frame = 0
Query: 128 EDMDRSSTNPPIRAWEEDSKEGRVVKGGTVSDFLSLSVDGVKAKKTHIAAXXXXXXXXXXXXXXXXXXXXXXHGHLQE-----GDGNIHSDEQKQQXSSGDVERDQDLQGKEKGREGGHGSGHTLSSHAQPFNSRFHTHHTDGNSCSGS-KFDPFNKNLPSRPSLPPPFSTKPVAETAEEDVETSFFLGDALDHLPMTVVMLIPDTPAVLADIIGKGGRTVGDIQRLSGCQISIERTVHRGRERKVALMGSICAVSTAQQIIMGRVRHLEEQSGVGREY-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIERESGCILKFQAEGEMEGGALGRMLEMLGGGYVAHATACYHVCRKLVDDRTLPSTWRGGDVFLAKQQQPKLSKMAAGGVVXXXXXXXXXXXXXXXXXGGKRGVSL-----SSLSGLASAFNSRGLLG--GEMEGGSLAGLGGNSSYMMAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGGNSNTGMLAGAPSSHRHTQHHLQQHLPHEDVLCASSSLFPSSHAGAGGLFSG-SLF--LRGGGEAGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNVFXXXXXXXXXXXXXXXG------GKGVFTVVHVYVPNKAVSFLIGKGGINVTAIEKQSGARLEFTREASPPTAERLVNIKGNPAAVEIAEGLLEAKTLEWQTSPTLIR 885
E+MD SSTNPP RA +E+ +E ++ K G + ++ V A AA G +QE + ++ +E++++ L+ G ++SS P SR H + + +G+ K DP + P + K VA+T EEDV++SFFL DA D MT+VML+PDTP VLAD+IGKGG TVG+IQRL+G Q+SIER VHRGRERKVALMGSI AV+TAQQII R+RHLEE GVGREY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXX WKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIER+SGCILKFQ+EGEME GALGR+LEMLGGG AHA ACYHVCRKL DDRTLP+ W+GGDVF A+Q+ K+ + G + S LSG A F ++ LG G E SL + G+ + G T + + S +Q +D+L ASS L P S A GG F+G S F XXXXXXXXXXXXXXXXXXXXX N F G G+G + VVHV VPNKAVSFLIGK GINV AIEK+SGA++EFTREASPP AERLVNIKGN AV+IAE LLEAKTLEWQTSPTLIR
Sbjct: 11 EEMDHSSTNPPTRAGDEE-EEDKMGKAGEQGAWERMNNAKVTATLAAAAA-----------------------GVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSS---PCPSRSPRHPGNRSHATGTGKGDPRGS---GEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESLGMPASQSLPPFPXXXXXXXPVWKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIERDSGCILKFQSEGEMENGALGRILEMLGGGCYAHARACYHVCRKLADDRTLPTIWKGGDVFSARQKLVKVGEHGGMGGRERVMGGDGTRLGLAALSPSRSPAPFFVPPRSHLSGQAPVFVAKASLGEKGGEERSSLKPVPGDRERAFPSGKHLGSMVTRNSSHSVSVPSFPPVTAAGG---------DMGEGQTPLSFDSFSDQPFGTRQYRQFNSPDDLLSASSLLLP-SQADPGGWFTGRSTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR 750
BLAST of NO18G02040 vs. NCBI_GenBank
Match: XP_005853721.1 (poly -binding protein 3 isoform 2, partial [Nannochloropsis gaditana CCMP526] >EKU22637.1 poly -binding protein 3 isoform 2, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 201.1 bits (510), Expect = 1.500e-47 Identity = 181/418 (43.30%), Postives = 238/418 (56.94%), Query Frame = 0
Query: 1 MAEEEGDIHAEAAAQMQAAMQTKDMSHFVGFIRDSFGGDTLAGAEFLREAVRRMDVSSSCNSGSVRRMK---KIYSTRIAATKEGKQEERIVXXXXXXXXXXXXXXXXXXXXXXXXVGRGRKTSLPSMT---------GEDMDRSSTNPPIRAWEEDSKEGRVVKGGTVSDFLSLSVDGVKAKKTHIAAXXXXXXXXXXXXXXXXXXXXXXHGHLQE-----GDGNIHSDEQKQQXSSGDVERDQDLQGKEKGREGGHGSGHTLSSHAQPFNSRFHTHHTDGNSCSGS-KFDPFNKNLPSRPSLPPPFSTKPVAETAEEDVETSFFLGDALDHLPMTVVMLIPDTPAVLADIIGKGGRTVGDIQRLSGCQISIERTVHRGRERKVALMGSICAVSTAQQIIMGRVRHLEEQSGVGREY 401
M EE + A AAQMQA M +DMS FVGFI++SF G+++AG FLREAVRRMD+ ++ ++ SV + + + + GK XXXXXXXXXXXXXXXXXXXXXX + G K+ + S T E+MD SSTNPP RA +E+ +E ++ K G + ++ V A AA G +QE + ++ +E++++ L+ G ++SS P SR H + + +G+ K DP + P + K VA+T EEDV++SFFL DA D MT+VML+PDTP VLAD+IGKGG TVG+IQRL+G Q+SIER VHRGRERKVALMGSI AV+TAQQII R+RHLEE GVGREY
Sbjct: 1 MMGEEKEHSAMVAAQMQAVMARRDMSEFVGFIKESFRGNSVAGVAFLREAVRRMDLHNNDSTSSVGKRQDTMTLEENENNLGRGGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXIELTSG-KSPVGSNTMLERPRHGEMEEMDHSSTNPPTRAGDEE-EEDKMGKAGEQGAWERMNNAKVTATLAAAAA-----------------------GVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSS---PCPSRSPRHPGNRSHATGTGKGDPRGS---GEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREY 387
BLAST of NO18G02040 vs. NCBI_GenBank
Match: XP_005853722.1 (rna binding protein [Nannochloropsis gaditana CCMP526] >XP_005854191.1 rna binding protein [Nannochloropsis gaditana CCMP526] >EKU22168.1 rna binding protein [Nannochloropsis gaditana CCMP526] >EKU22638.1 rna binding protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 141.0 bits (354), Expect = 1.800e-29 Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 0
Query: 800 GKGVFTVVHVYVPNKAVSFLIGKGGINVTAIEKQSGARLEFTREASPPTAERLVNIKGNPAAVEIAEGLLEAKTLEWQTSPTLIR 885
G+G + VVHV VPNKAVSFLIGK GINV AIEK+SGA++EFTREASPP AERLVNIKGN AV+IAE LLEAKTLEWQTSPTLIR
Sbjct: 39 GRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR 123 The following BLAST results are available for this feature:
BLAST of NO18G02040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G02040 ID=NO18G02040|Name=NO18G02040|organism=Nannochloropsis oceanica|type=gene|length=3900bpback to top protein sequence of NO18G02040.1 >NO18G02040.1-protein ID=NO18G02040.1-protein|Name=NO18G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=885bpback to top Synonyms
Publications
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