Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr18 genome chr18:633789..637688 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G02040.1 vs.
Match: EWM23411.1 (hypothetical protein Naga_100077g12 [Nannochloropsis gaditana])
HSP 1 Score: 510.0 bits (1312), Expect = 1.500e-140
Identity = 384/786 (48.85%), Postives = 468/786 (59.54%), Query Frame = 0
Query: 128 EDMDRSSTNPPIRAWEEDSKEGRVVKGGTVSDFLSLSVDGVKAKKTHIAAIASAAAAVVAAAGRQVREEEGGHGHLQEGDGNIHSDEQKQQQSSGDVERDQDLQGKEKGREGGHGSGHTLSSHAQPFNSRFHTHHTDGNSCSGS-KFDPFNKNLPSRPSLPPPFSTKPVAETAEEDVETSFFLGDALDHLPMTVVMLIPDTPAVLADIIGKGGRTVGDIQRLSGCQISIERTVHRGRERKVALMGSICAVSTAQQIIMGRVRHLEEQSGVGREYGYSHGQEGRKGGREGGMEGGLGLSSSSSSSMTSSSSSSTSNSPS---LGPTQQLYQQQTQHHHHHHHPTWKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIERESGCILKFQAEGEMEGGALGRMLEMLGGGYVAHATACYHVCRKLVDDRTLPSTWRGGDVFLAKQQQPKLSKMAAGGVVGPSVVFPSSSGGGGAREG-----GKRGVS------LSSLSGLASAFNSRGLLG--GEMEGGSLAGLGGNSSYMMAESLSLSSTSSNNSAASTSSSASSLSSSPVGTTSCGVGSREGGNSNTGMLAGAPSSHRHTQHHLQQHLPHEDVLCASSSLFPSSHAGAGGLFSG-SLFLRGGG----EAGGEGG-------WGAGDVMMIMEREKERERENREREGSRDGESNVFGGSSAAATAAAAAMNGGKGVFTVVHVYVPNKAVSFLIGKGGINVTAIEKQSGARLEFTREASPPTAERLVNIKGNPAAVEIAEGLLEAKTLEWQTSPTLIR 885
E+MD SSTNPP RA +E+ +E ++ K G + ++ AK T A +A+AAA V+ A + E ++ +E++++ L+ G ++SS P SR H + + +G+ K DP + P + K VA+T EEDV++SFFL DA D MT+VML+PDTP VLAD+IGKGG TVG+IQRL+G Q+SIER VHRGRERKVALMGSI AV+TAQQII R+RHLEE GVGREY KG EG SSS+SSS +SS+SSS+S+SPS LG HHHHHP WKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIER+SGCILKFQ+EGEME GALGR+LEMLGGG AHA ACYHVCRKL DDRTLP+ W+GGDVF A+Q+ K+ + GG+ G V GG G R G R + S LSG A F ++ LG G E SL + G+ L S + NS+ S S + S P T + G + G T + + S +Q +D+L ASS L PS A GG F+G S F GGG E GG GG WGAGDVMM+M R KE+ERE RE + D + + S + + G+G + VVHV VPNKAVSFLIGK GINV AIEK+SGA++EFTREASPP AERLVNIKGN AV+IAE LLEAKTLEWQTSPTLIR
Sbjct: 11 EEMDHSSTNPPTRAGDEE-EEDKMGKAGEQGAWERMN----NAKVT--ATLAAAAAGVIQEAAMAIAE------------AGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSS---PCPSRSPRHPGNRSHATGTGKGDPRGSG---EGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTP--KGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIERDSGCILKFQSEGEMENGALGRILEMLGGGCYAHARACYHVCRKLADDRTLPTIWKGGDVFSARQKLVKVGEH--GGMGGRERVM----GGDGTRLGLAALSPSRSPAPFFVPPRSHLSGQAPVFVAKASLGEKGGEERSSLKPVPGDRERAFPSGKHLGSMVTRNSSHSVS-----VPSFPPVTAAGG----DMGEGQTPLSFDSFSDQPFGTRQYRQFNSPDDLLSASSLLLPSQ-ADPGGWFTGRSTFFWGGGDTRVEKGGNGGEEEKGDGWGAGDVMMMMARVKEQEREMRENSFAWDAKGS---ESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR 750
The following BLAST results are available for this feature:
BLAST of NO18G02040.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 1.50e-140 / Id = 48.85 Sequence EWM23411.1
Match Name E-value Identity Description
EWM23411.1 1.500e-140 48.85 hypothetical protein Naga_100077g12 [Nannochlorops... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO18G02040.1 ID=NO18G02040.1|Name=NO18G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=3342bp back to top protein sequence of NO18G02040.1
>NO18G02040.1-protein ID=NO18G02040.1-protein|Name=NO18G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=885bp back to top mRNA from alignment at chr18:633789..637688+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02040.1 ID=NO18G02040.1|Name=NO18G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=3900bp|location=Sequence derived from alignment at chr18:633789..637688+ (Nannochloropsis oceanica)ATGGCCGAGGAGG
AGGGCGACATCCACGCGGAGGCCGCGGCGCAGATGCAAGCCGCTATGCAA
ACCAAGGACATGTCACAT GTAAGCAAAGCCCCCCCCGCACAGAGCAAAAA
TGGGCATCAAGACTGAATAAGCTATTCGTGCGTCCCAGAATACTAGTGCC
TGCGTTTATGTCTTGTCATGCACACACCCAACAAAGCTTCAAAAGCCCTA
TGTTTGTCTCGCATTGTGAGGGCGTTCGGTTCTTTTTGCTCACTCGAATG
TCGGGGCTCCGGAGGGAGGCGTGCTTGAAAATCCCGGCCAGACCGACCAC
CACAATTCACGAGCCCAGACACGCGCCCCTCACCCAAATACTAGCGCCAG
TATCAGTACGAGCAGCAAGCTACTCATTCTGTGCACTCAGTCATCCATTC
AGCCATATGTCTTCCCCCTCTAAATAGAGCACCAGCGTCCAAACATGATC
GACGGGAGGGCCAGTTTCCGCAAAAAGGACTTACATCCACACCCACCCAC
ACATGGCAGCTGCATCACTAGCACCAGCAGTAGAAGCAGCAAAATAAACC
ACCCAAATTGTGTCGCACACCATGTCTCTCATATAAAAGCGGCCCCTTGC
TATGCACACCACCAAACTAAAAACAGTTCGTGGGCTTCATCAGGGACAGC
TTCGGCGGCGACACCTTGGCAGGCGCCGAATTCCTCCGCGAAGCCGTACG
GCGGATGGATGTCAGCAGCAGCTGCAACAGCGGCAGTGTCAGGAGGATGA
AGAAAATTTATTCCACGCGGATAGCGGCGACAAAAGAGGGGAAGCAGGAA
GAGAGAATTGTCGCAGCAGATGAAGAGGAGCAGGGACAGACCGAAGAGGA
GGTGGAGGAAGAAGAGGAGGGGGAGGGTAAGAGGGTTGGGAGGGGGAGGA
AGACCAGTCTGCCCTCGATGACAGGAGAGGACATGGACAGGAGCAGCACC
AACCCGCCTATCCGCGCTTGGGAGGAGGACTCGAAGGAGGGAAGGGTGGT
TAAAGGCGGGACAGTGTCGGACTTTTTGTCTTTGAGTGTCGATGGGGTTA
AAGCCAAGAAGACCCATATAGCTGCAATAGCCTCTGCTGCTGCTGCTGTA
GTAGCTGCTGCTGGTCGGCAGGTAAGAGAGGAGGAGGGGGGACATGGCCA
TTTGCAGGAAGGAGACGGAAACATTCATTCTGATGAGCAGAAGCAGCAGC
AGAGTTCTGGGGATGTCGAGAGAGACCAAGATCTCCAAGGCAAGGAGAAA
GGGAGGGAGGGAGGGCACGGTTCTGGCCACACACTCTCTTCGCACGCCCA
GCCCTTCAATTCTCGTTTCCACACGCATCACACCGACGGCAACAGCTGTA
GCGGCAGCAAATTTGATCCCTTTAATAAAAACTTGCCCTCCCGCCCTTCA
CTTCCTCCCCCCTTTTCGACCAAACCTGTGGCGGAAACCGCGGAGGAGGA
CGTGGAGACCTCGTTCTTCCTCGGCGATGCCCTGGACCATTTGCCTATGA
CCGTCGTCATGCTCATCCCCGACACTCCCGCGGTCTTGGCAGATATTATT
GGAAAAGGAGGGAGAACCGTGGGGGACATCCAGCGGCTGTCTGGGTGCCA
GATATCGATCGAGCGGACGGTGCACCGGGGAAGGGAGAGGAAGGTGGCCC
TGATGGGCTCCATTTGTGCCGTGTCGACCGCGCAGCAGATCATCATGGGG
AGGGTCAGGCACTTAGAGGAACAGAGCGGGGTGGGCAGGGAATATGGATA
TTCGCATGGGCAGGAAGGGAGGAAGGGAGGGAGGGAGGGAGGGATGGAGG
GGGGGTTGGGTTTAAGCTCTTCGAGTTCGTCTTCGATGACGTCGTCCTCG
TCCTCGTCCACATCCAACTCTCCTTCCTTGGGCCCAACACAGCAGCTGTA
CCAACAGCAAACACAGCACCACCATCACCACCATCACCCTACTTGGAAGG
ATGCGCAGGGCTGTTTGAAACTGAAGCTATGCGTACCTAACTGCACGGTC
CGTCACTTGATTGGGAGGGCAGGCACGGTCGTCTCGGCCATCGAGCGAGA
AAGTGGATGTATCCTCAAGTTCCAAGCGGAGGGCGAGATGGAGGGGGGAG
CGCTGGGAAGGATGCTAGAGATGCTGGGGGGGGGTTATGTGGCGCACGCC
ACGGCATGCTATCACGTGTGTCGGAAGCTGGTGGACGATCGCACCTTGCC
TTCCACGTGGAGGGGTGGAGATGTTTTCCTGGCAAAGCAGCAGCAGCCAA
AATTGTCGAAGATGGCTGCAGGAGGGGTGGTAGGCCCCTCTGTGGTTTTT
CCTTCTTCAAGTGGGGGAGGGGGAGCGAGGGAGGGAGGAAAGAGGGGTGT
GTCTTTGTCGTCGCTTTCGGGGTTGGCGAGTGCGTTTAATTCTCGAGGCC
TGTTGGGAGGAGAGATGGAAGGAGGGAGCTTGGCAGGGCTCGGTGGGAAT
AGTAGTTATATGATGGCAGAGAGCTTAAGTCTGAGCAGCACCAGCAGCAA
CAACAGCGCGGCCTCCACCTCATCCTCTGCCTCCTCTTTGTCTTCTTCCC
CTGTTGGGACAACTTCTTGTGGAGTGGGGAGCAGGGAAGGGGGGAACAGC
AACACGGGCATGCTTGCCGGCGCTCCTTCCTCTCATCGTCACACCCAGCA
TCATTTGCAGCAGCATTTACCGCATGAAGATGTGTTATGTGCTTCTTCTT
CTCTCTTCCCATCCTCTCACGCGGGCGCCGGTGGTTTATTTTCAGGGAGT
CTTTTCCTGCGGGGAGGAGGGGAAGCAGGAGGGGAGGGGGGGTGGGGCGC
GGGAGATGTGATGATGATTATGGAAAGGGAAAAGGAACGAGAGAGGGAAA
ATAGAGAGAGGGAAGGGTCGAGAGACGGTGAGAGCAACGTCTTTGGTGGA
AGCAGCGCCGCTGCGACTGCTGCTGCTGCGGCCATGAACGGAGGGAAGGG
CGTTTTCACGGTTGTCCATGTGTATGTGCCTAACAAGGCTGTCAGCTTTC
TGATTGGAAAAGGCGGGATCAATGTCACGGCGATCGAGAAGCAGTCGGGT
GCACGCTTGGAGTTCACGAGGGAGGCAAGCCCACCCACAGCGGAGAGGCT
GGTGAACATAAAGGGCAATCCGGCAGCTGTGGAGATCGCCGAGGGCCTCT
TAGAAGCGAAGACGCTTGAATGGCAGACAAGCCCGACTTTGATCCGATAA
back to top Coding sequence (CDS) from alignment at chr18:633789..637688+
>NO18G02040.1 ID=NO18G02040.1|Name=NO18G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=2655bp|location=Sequence derived from alignment at chr18:633789..637688+ (Nannochloropsis oceanica) back to top