NO18G01990, NO18G01990 (gene) Nannochloropsis oceanica

Overview
NameNO18G01990
Unique NameNO18G01990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1482
Alignment locationchr18:614084..615565 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:614084..615565 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G01990 vs. NCBI_GenBank
Match: EWM23418.1 (hypothetical protein Naga_100077g17 [Nannochloropsis gaditana])

HSP 1 Score: 389.0 bits (998), Expect = 1.900e-104
Identity = 213/326 (65.34%), Postives = 249/326 (76.38%), Query Frame = 0 
Query:  117 SSDPSTGNPTAHAVKDTIGTAVKEEERMGPGAPEGHWTDAENIKRELQVFFSVRAVEEQRLLDEKSSNPLRNYLGLTDVEQKRIRKRDVLIDRNLYSDLKRHGFDYLVLPIMELGGFRAFAPMFAIRGDQPPRQEDTGGLALGAALEAKLGTLSDKVSADQGKEGRREGGEKGE------GMPVLLTAGVPSHIRDDEASLDPAGWKKGK-SVVIAPA-KPKKDWGKEFLLSNPSKLYSALLLLDLAVGFGRSTIGALDRGFLTPSLLNYVQLAAEVGVLANILSAPLIFLFVTKAGKPWEYALPLAVKALMGGPVAMVEYKLKGE 435
            SS  S  +P   A  D +G AV+EEERMGPGAPEG+W+D ENIK EL VFF+VRA EE+RLL+EKS NPLRNYLGL D EQKRIR+R  LIDR+LYSDL+R+GFDYLVLPIME GGFRAFA +FA+ GD PPR+E TGGLALGAALEAKLGTLSDKVSA  GK G  E G KG+      G  VL T   P   R +   LDPA WKKG+     +PA K K D  K   LSNPSKLYSALLLLD+AV +G++T GALDRGFLTPSLL+Y+QLAAEVG+LAN+LS PL FLFV+K G+P E A+ LA+KA +GGPV +VE + +G+
Sbjct:   77 SSQSSADDPIVDA-SDGVGRAVREEERMGPGAPEGYWSDVENIKHELDVFFTVRAAEERRLLEEKSGNPLRNYLGLADEEQKRIRRRGALIDRDLYSDLRRYGFDYLVLPIMEQGGFRAFAAIFAVNGDHPPREEQTGGLALGAALEAKLGTLSDKVSASVGKAGGEE-GRKGQAPVAALGREVLRTG--PESWRYETDGLDPAQWKKGELDTTASPAPKLKSDVWKYSGLSNPSKLYSALLLLDMAVAWGKATSGALDRGFLTPSLLSYIQLAAEVGILANLLSVPLTFLFVSKTGQPVEKAVSLALKAFVGGPVLLVECRFQGD 398
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BLAST of NO18G01990 vs. NCBI_GenBank
Match: XP_005854190.1 (hypothetical protein NGA_0232400 [Nannochloropsis gaditana CCMP526] >EKU22167.1 hypothetical protein NGA_0232400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 374.8 bits (961), Expect = 3.700e-100
Identity = 200/299 (66.89%), Postives = 234/299 (78.26%), Query Frame = 0 
Query:  144 MGPGAPEGHWTDAENIKRELQVFFSVRAVEEQRLLDEKSSNPLRNYLGLTDVEQKRIRKRDVLIDRNLYSDLKRHGFDYLVLPIMELGGFRAFAPMFAIRGDQPPRQEDTGGLALGAALEAKLGTLSDKVSADQGKEGRREGGEKGE------GMPVLLTAGVPSHIRDDEASLDPAGWKKGK-SVVIAPA-KPKKDWGKEFLLSNPSKLYSALLLLDLAVGFGRSTIGALDRGFLTPSLLNYVQLAAEVGVLANILSAPLIFLFVTKAGKPWEYALPLAVKALMGGPVAMVEYKLKGE 435
            MGPGAPEG+W+D ENIK EL+VFF+VRA EE+RLL+EKS NPLRNYLGL D EQKRIR+R  LIDR+LYSDL+R+GFDYLVLPIME GGFRAFA +FA+ GD PPR+E TGGLALGAALEAKLGTLSDKVSA  GK G  E G KG+      G  VL T   P   R +   LDPA WKKG+     +PA K K D  K   LSNPSKLYSALLLLD+AV +G++T GALDRGFL PSLL+Y+QLAAEVG+LAN+LS PLIFLFV+K G+P E A+ LA+KA +GGPV +VE + +G+
Sbjct:    1 MGPGAPEGYWSDVENIKHELEVFFTVRAAEERRLLEEKSGNPLRNYLGLADEEQKRIRRRGALIDRDLYSDLRRYGFDYLVLPIMEQGGFRAFAAIFAVNGDHPPREEQTGGLALGAALEAKLGTLSDKVSASAGKAGGEE-GRKGQAPVAALGREVLRTG--PESWRYETDGLDPAQWKKGELDTTASPAPKLKSDVWKYLALSNPSKLYSALLLLDVAVAWGKATSGALDRGFLAPSLLSYIQLAAEVGILANLLSVPLIFLFVSKTGQPVEKAVSLALKAFVGGPVLLVECRFQGD 296
The following BLAST results are available for this feature:
BLAST of NO18G01990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23418.11.900e-10465.34hypothetical protein Naga_100077g17 [Nannochlorops... [more]
XP_005854190.13.700e-10066.89hypothetical protein NGA_0232400 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004055NSK004055Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01990.1NO18G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604388gene_8892Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100077g17gene7052Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01990.1NO18G01990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01990 ID=NO18G01990|Name=NO18G01990|organism=Nannochloropsis oceanica|type=gene|length=1482bp
ACAACAGACAGGAGCGTGCTGAAAGACGTCTTTAAACCCTTCTGAGCATT
GGTGCTGCCGTACTTCCTCGCCTTATTTCCTTGCATTGCGTGACAAGGCA
GCAACGCATTGCAACTTGCTGCACTCGCTCCTTCCCGGACTGGAAATGCC
TTCATCACTACTATCATCTCCGTTCACACCGCGGCAGCAATCGCAGTACA
CGCGGCAAGCCATAGCCTCCCTCATCATCGCCGTCCTGTTTGTCCTCACT
GCTCCCTCTAGCATTGCCTGGCGCCTCCCACCATCCACTCCCGTCTCCTC
TCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCAGTCGCTGCCTTTCC
CGCTCCCTACATCTCCACCACTTTACCACGCCCTTCCGATCACTCACTAA
CACCAGATACAGCACTACAAGTACCGCTCTTACCGCTATTCCCTCCTCAG
ATCCCTCGACTGGAAACCCCACCGCCCACGCGGTGAAAGACACCATCGGC
ACTGCCGTCAAGGAGGAGGAACGGATGGGCCCCGGGGCTCCAGAAGGCCA
CTGGACGGACGCGGAAAATATTAAGCGAGAACTCCAGGTTTTCTTCTCGG
TGCGTGCAGTGGAGGAACAGCGTCTGCTGGACGAGAAGTCGTCGAACCCT
TTAAGGAATTACCTGGGGCTGACCGATGTGGAACAAAAGCGAATTCGGAA
GCGGGACGTATTAATCGATAGGAACCTCTACAGTGACCTCAAACGGCATG
GATTTGACTATTTAGTCCTACCTATTATGGAACTGGGGGGGTTTCGGGCA
TTTGCGCCCATGTTCGCCATTCGTGGGGATCAGCCGCCAAGGCAAGAGGA
CACGGGGGGGTTAGCGTTAGGTGCGGCCTTGGAGGCAAAATTAGGCACGT
TGTCTGATAAGGTCTCGGCGGATCAGGGAAAGGAGGGAAGGAGGGAAGGA
GGTGAGAAAGGAGAGGGGATGCCTGTTTTGCTGACGGCGGGTGTTCCTAG
TCATATAAGGGATGATGAGGCGAGCTTGGATCCAGCAGGGTGGAAGAAGG
GGAAGTCCGTCGTCATTGCACCAGCTAAGCCCAAAAAAGATTGGGGGAAG
GAGTTTCTCCTCTCCAATCCCTCGAAGCTTTACAGCGCTCTTCTTCTCCT
CGATCTCGCTGTGGGCTTCGGAAGGTCGACGATAGGAGCGCTCGATAGGG
GCTTTTTGACTCCCTCCCTCCTGAACTACGTGCAGCTTGCAGCTGAAGTT
GGAGTGCTGGCCAATATTCTGAGTGCGCCACTCATATTTTTGTTTGTGAC
CAAAGCAGGAAAGCCATGGGAATATGCCTTGCCGTTGGCGGTGAAGGCTC
TTATGGGGGGGCCTGTGGCGATGGTTGAATATAAACTGAAGGGGGAGTTG
GGTGGCGATGGTAGTGGGTAGAGGGGGAGGGT
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protein sequence of NO18G01990.1

>NO18G01990.1-protein ID=NO18G01990.1-protein|Name=NO18G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MPSSLLSSPFTPRQQSQYTRQAIASLIIAVLFVLTAPSSIAWRLPPSTPV
SSPSSSSSSSSSSSSSSSSSSSSSSSFSSSSRCLSRSLHLHHFTTPFRSL
TNTRYSTTSTALTAIPSSDPSTGNPTAHAVKDTIGTAVKEEERMGPGAPE
GHWTDAENIKRELQVFFSVRAVEEQRLLDEKSSNPLRNYLGLTDVEQKRI
RKRDVLIDRNLYSDLKRHGFDYLVLPIMELGGFRAFAPMFAIRGDQPPRQ
EDTGGLALGAALEAKLGTLSDKVSADQGKEGRREGGEKGEGMPVLLTAGV
PSHIRDDEASLDPAGWKKGKSVVIAPAKPKKDWGKEFLLSNPSKLYSALL
LLDLAVGFGRSTIGALDRGFLTPSLLNYVQLAAEVGVLANILSAPLIFLF
VTKAGKPWEYALPLAVKALMGGPVAMVEYKLKGELGGDGSG*
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Synonyms
Publications