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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr18 | genome | chr18:614084..615565 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01990.1 vs.
Match: EWM23418.1 (hypothetical protein Naga_100077g17 [Nannochloropsis gaditana]) HSP 1 Score: 389.0 bits (998), Expect = 1.900e-104 Identity = 213/326 (65.34%), Postives = 249/326 (76.38%), Query Frame = 0
Query: 117 SSDPSTGNPTAHAVKDTIGTAVKEEERMGPGAPEGHWTDAENIKRELQVFFSVRAVEEQRLLDEKSSNPLRNYLGLTDVEQKRIRKRDVLIDRNLYSDLKRHGFDYLVLPIMELGGFRAFAPMFAIRGDQPPRQEDTGGLALGAALEAKLGTLSDKVSADQGKEGRREGGEKGE------GMPVLLTAGVPSHIRDDEASLDPAGWKKGK-SVVIAPA-KPKKDWGKEFLLSNPSKLYSALLLLDLAVGFGRSTIGALDRGFLTPSLLNYVQLAAEVGVLANILSAPLIFLFVTKAGKPWEYALPLAVKALMGGPVAMVEYKLKGE 435
SS S +P A D +G AV+EEERMGPGAPEG+W+D ENIK EL VFF+VRA EE+RLL+EKS NPLRNYLGL D EQKRIR+R LIDR+LYSDL+R+GFDYLVLPIME GGFRAFA +FA+ GD PPR+E TGGLALGAALEAKLGTLSDKVSA GK G E G KG+ G VL T P R + LDPA WKKG+ +PA K K D K LSNPSKLYSALLLLD+AV +G++T GALDRGFLTPSLL+Y+QLAAEVG+LAN+LS PL FLFV+K G+P E A+ LA+KA +GGPV +VE + +G+
Sbjct: 77 SSQSSADDPIVDA-SDGVGRAVREEERMGPGAPEGYWSDVENIKHELDVFFTVRAAEERRLLEEKSGNPLRNYLGLADEEQKRIRRRGALIDRDLYSDLRRYGFDYLVLPIMEQGGFRAFAAIFAVNGDHPPREEQTGGLALGAALEAKLGTLSDKVSASVGKAGGEE-GRKGQAPVAALGREVLRTG--PESWRYETDGLDPAQWKKGELDTTASPAPKLKSDVWKYSGLSNPSKLYSALLLLDMAVAWGKATSGALDRGFLTPSLLSYIQLAAEVGILANLLSVPLTFLFVSKTGQPVEKAVSLALKAFVGGPVLLVECRFQGD 398
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01990.1 ID=NO18G01990.1|Name=NO18G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
ACAACAGACAGGAGCGTGCTGAAAGACGTCTTTAAACCCTTCTGAGCATT
GGTGCTGCCGTACTTCCTCGCCTTATTTCCTTGCATTGCGTGACAAGGCA
GCAACGCATTGCAACTTGCTGCACTCGCTCCTTCCCGGACTGGAAATGCC
TTCATCACTACTATCATCTCCGTTCACACCGCGGCAGCAATCGCAGTACA
CGCGGCAAGCCATAGCCTCCCTCATCATCGCCGTCCTGTTTGTCCTCACT
GCTCCCTCTAGCATTGCCTGGCGCCTCCCACCATCCACTCCCGTCTCCTC
TCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCAGTCGCTGCCTTTCC
CGCTCCCTACATCTCCACCACTTTACCACGCCCTTCCGATCACTCACTAA
CACCAGATACAGCACTACAAGTACCGCTCTTACCGCTATTCCCTCCTCAG
ATCCCTCGACTGGAAACCCCACCGCCCACGCGGTGAAAGACACCATCGGC
ACTGCCGTCAAGGAGGAGGAACGGATGGGCCCCGGGGCTCCAGAAGGCCA
CTGGACGGACGCGGAAAATATTAAGCGAGAACTCCAGGTTTTCTTCTCGG
TGCGTGCAGTGGAGGAACAGCGTCTGCTGGACGAGAAGTCGTCGAACCCT
TTAAGGAATTACCTGGGGCTGACCGATGTGGAACAAAAGCGAATTCGGAA
GCGGGACGTATTAATCGATAGGAACCTCTACAGTGACCTCAAACGGCATG
GATTTGACTATTTAGTCCTACCTATTATGGAACTGGGGGGGTTTCGGGCA
TTTGCGCCCATGTTCGCCATTCGTGGGGATCAGCCGCCAAGGCAAGAGGA
CACGGGGGGGTTAGCGTTAGGTGCGGCCTTGGAGGCAAAATTAGGCACGT
TGTCTGATAAGGTCTCGGCGGATCAGGGAAAGGAGGGAAGGAGGGAAGGA
GGTGAGAAAGGAGAGGGGATGCCTGTTTTGCTGACGGCGGGTGTTCCTAG
TCATATAAGGGATGATGAGGCGAGCTTGGATCCAGCAGGGTGGAAGAAGG
GGAAGTCCGTCGTCATTGCACCAGCTAAGCCCAAAAAAGATTGGGGGAAG
GAGTTTCTCCTCTCCAATCCCTCGAAGCTTTACAGCGCTCTTCTTCTCCT
CGATCTCGCTGTGGGCTTCGGAAGGTCGACGATAGGAGCGCTCGATAGGG
GCTTTTTGACTCCCTCCCTCCTGAACTACGTGCAGCTTGCAGCTGAAGTT
GGAGTGCTGGCCAATATTCTGAGTGCGCCACTCATATTTTTGTTTGTGAC
CAAAGCAGGAAAGCCATGGGAATATGCCTTGCCGTTGGCGGTGAAGGCTC
TTATGGGGGGGCCTGTGGCGATGGTTGAATATAAACTGAAGGGGGAGTTG
GGTGGCGATGGTAGTGGGTAGAGGGGGAGGGT back to topprotein sequence of NO18G01990.1 >NO18G01990.1-protein ID=NO18G01990.1-protein|Name=NO18G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MPSSLLSSPFTPRQQSQYTRQAIASLIIAVLFVLTAPSSIAWRLPPSTPV
SSPSSSSSSSSSSSSSSSSSSSSSSSFSSSSRCLSRSLHLHHFTTPFRSL
TNTRYSTTSTALTAIPSSDPSTGNPTAHAVKDTIGTAVKEEERMGPGAPE
GHWTDAENIKRELQVFFSVRAVEEQRLLDEKSSNPLRNYLGLTDVEQKRI
RKRDVLIDRNLYSDLKRHGFDYLVLPIMELGGFRAFAPMFAIRGDQPPRQ
EDTGGLALGAALEAKLGTLSDKVSADQGKEGRREGGEKGEGMPVLLTAGV
PSHIRDDEASLDPAGWKKGKSVVIAPAKPKKDWGKEFLLSNPSKLYSALL
LLDLAVGFGRSTIGALDRGFLTPSLLNYVQLAAEVGVLANILSAPLIFLF
VTKAGKPWEYALPLAVKALMGGPVAMVEYKLKGELGGDGSG* back to topmRNA from alignment at chr18:614084..615565- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01990.1 ID=NO18G01990.1|Name=NO18G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at chr18:614084..615565- (Nannochloropsis oceanica)
ACAACAGACAGGAGCGTGCTGAAAGACGTCTTTAAACCCTTCTGAGCATT
GGTGCTGCCGTACTTCCTCGCCTTATTTCCTTGCATTGCGTGACAAGGCA
GCAACGCATTGCAACTTGCTGCACTCGCTCCTTCCCGGACTGGAAATGCC
TTCATCACTACTATCATCTCCGTTCACACCGCGGCAGCAATCGCAGTACA
CGCGGCAAGCCATAGCCTCCCTCATCATCGCCGTCCTGTTTGTCCTCACT
GCTCCCTCTAGCATTGCCTGGCGCCTCCCACCATCCACTCCCGTCTCCTC
TCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCAGTCGCTGCCTTTCC
CGCTCCCTACATCTCCACCACTTTACCACGCCCTTCCGATCACTCACTAA
CACCAGATACAGCACTACAAGTACCGCTCTTACCGCTATTCCCTCCTCAG
ATCCCTCGACTGGAAACCCCACCGCCCACGCGGTGAAAGACACCATCGGC
ACTGCCGTCAAGGAGGAGGAACGGATGGGCCCCGGGGCTCCAGAAGGCCA
CTGGACGGACGCGGAAAATATTAAGCGAGAACTCCAGGTTTTCTTCTCGG
TGCGTGCAGTGGAGGAACAGCGTCTGCTGGACGAGAAGTCGTCGAACCCT
TTAAGGAATTACCTGGGGCTGACCGATGTGGAACAAAAGCGAATTCGGAA
GCGGGACGTATTAATCGATAGGAACCTCTACAGTGACCTCAAACGGCATG
GATTTGACTATTTAGTCCTACCTATTATGGAACTGGGGGGGTTTCGGGCA
TTTGCGCCCATGTTCGCCATTCGTGGGGATCAGCCGCCAAGGCAAGAGGA
CACGGGGGGGTTAGCGTTAGGTGCGGCCTTGGAGGCAAAATTAGGCACGT
TGTCTGATAAGGTCTCGGCGGATCAGGGAAAGGAGGGAAGGAGGGAAGGA
GGTGAGAAAGGAGAGGGGATGCCTGTTTTGCTGACGGCGGGTGTTCCTAG
TCATATAAGGGATGATGAGGCGAGCTTGGATCCAGCAGGGTGGAAGAAGG
GGAAGTCCGTCGTCATTGCACCAGCTAAGCCCAAAAAAGATTGGGGGAAG
GAGTTTCTCCTCTCCAATCCCTCGAAGCTTTACAGCGCTCTTCTTCTCCT
CGATCTCGCTGTGGGCTTCGGAAGGTCGACGATAGGAGCGCTCGATAGGG
GCTTTTTGACTCCCTCCCTCCTGAACTACGTGCAGCTTGCAGCTGAAGTT
GGAGTGCTGGCCAATATTCTGAGTGCGCCACTCATATTTTTGTTTGTGAC
CAAAGCAGGAAAGCCATGGGAATATGCCTTGCCGTTGGCGGTGAAGGCTC
TTATGGGGGGGCCTGTGGCGATGGTTGAATATAAACTGAAGGGGGAGTTG
GGTGGCGATGGTAGTGGGTAGAGGGGGAGGGT back to topCoding sequence (CDS) from alignment at chr18:614084..615565- >NO18G01990.1 ID=NO18G01990.1|Name=NO18G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at chr18:614084..615565- (Nannochloropsis oceanica)
ATGCCTTCATCACTACTATCATCTCCGTTCACACCGCGGCAGCAATCGCA
GTACACGCGGCAAGCCATAGCCTCCCTCATCATCGCCGTCCTGTTTGTCC
TCACTGCTCCCTCTAGCATTGCCTGGCGCCTCCCACCATCCACTCCCGTC
TCCTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCAGTCGCTGCC
TTTCCCGCTCCCTACATCTCCACCACTTTACCACGCCCTTCCGATCACTC
ACTAACACCAGATACAGCACTACAAGTACCGCTCTTACCGCTATTCCCTC
CTCAGATCCCTCGACTGGAAACCCCACCGCCCACGCGGTGAAAGACACCA
TCGGCACTGCCGTCAAGGAGGAGGAACGGATGGGCCCCGGGGCTCCAGAA
GGCCACTGGACGGACGCGGAAAATATTAAGCGAGAACTCCAGGTTTTCTT
CTCGGTGCGTGCAGTGGAGGAACAGCGTCTGCTGGACGAGAAGTCGTCGA
ACCCTTTAAGGAATTACCTGGGGCTGACCGATGTGGAACAAAAGCGAATT
CGGAAGCGGGACGTATTAATCGATAGGAACCTCTACAGTGACCTCAAACG
GCATGGATTTGACTATTTAGTCCTACCTATTATGGAACTGGGGGGGTTTC
GGGCATTTGCGCCCATGTTCGCCATTCGTGGGGATCAGCCGCCAAGGCAA
GAGGACACGGGGGGGTTAGCGTTAGGTGCGGCCTTGGAGGCAAAATTAGG
CACGTTGTCTGATAAGGTCTCGGCGGATCAGGGAAAGGAGGGAAGGAGGG
AAGGAGGTGAGAAAGGAGAGGGGATGCCTGTTTTGCTGACGGCGGGTGTT
CCTAGTCATATAAGGGATGATGAGGCGAGCTTGGATCCAGCAGGGTGGAA
GAAGGGGAAGTCCGTCGTCATTGCACCAGCTAAGCCCAAAAAAGATTGGG
GGAAGGAGTTTCTCCTCTCCAATCCCTCGAAGCTTTACAGCGCTCTTCTT
CTCCTCGATCTCGCTGTGGGCTTCGGAAGGTCGACGATAGGAGCGCTCGA
TAGGGGCTTTTTGACTCCCTCCCTCCTGAACTACGTGCAGCTTGCAGCTG
AAGTTGGAGTGCTGGCCAATATTCTGAGTGCGCCACTCATATTTTTGTTT
GTGACCAAAGCAGGAAAGCCATGGGAATATGCCTTGCCGTTGGCGGTGAA
GGCTCTTATGGGGGGGCCTGTGGCGATGGTTGAATATAAACTGAAGGGGG
AGTTGGGTGGCGATGGTAGTGGGTAG back to top
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