NO18G01980, NO18G01980 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G01980 vs. NCBI_GenBank
Match: XP_005854192.1 (U2 small nuclear ribonucleoprotein B'', partial [Nannochloropsis gaditana CCMP526] >EKU22169.1 U2 small nuclear ribonucleoprotein B'', partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 265.4 bits (677), Expect = 1.600e-67 Identity = 141/226 (62.39%), Postives = 162/226 (71.68%), Query Frame = 0 Query: 1 MGDIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLRGQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYEPKAKRXXXXXXXXXXXXXXXXXXXXXXXXXK---------VKGNPVASGEVSSMLMAQDLPAEINDEMLGVLFARFDGFQEIRLAGQRGIAFIEFRDELAASTALSGLNEYKLSPTHTLKLSYAKR 218 MGDIPPNQTLYVQNL +KL K +LKK LY+AFSAYGRVID+VAC+G +LRGQAWVV+DSVGSATTALRSLQGF F G+P+RI FA GKS+AVALR+G YEP +KR + V G +A+GEVSSMLMAQ+LP E +EML VLF RF GF EIRLAGQRGIAFIEFRDE++A TA N +KLS T LKL+YAKR Sbjct: 64 MGDIPPNQTLYVQNLNEKLNKVSLKKLLYLAFSAYGRVIDIVACRGESLRGQAWVVFDSVGSATTALRSLQGFPFLGKPMRIQFAKGKSNAVALREGTYEPGSKRRKRGEKDGKKKEESQKLSGSRDEGKRGKEAEAEEHVAGMALAAGEVSSMLMAQELPTECTEEMLAVLFRRFAGFHEIRLAGQRGIAFIEFRDEVSARTAFQAYNGFKLSQTDALKLTYAKR 289
BLAST of NO18G01980 vs. NCBI_GenBank
Match: EWM23407.1 (spliceosomal protein [Nannochloropsis gaditana]) HSP 1 Score: 265.4 bits (677), Expect = 1.600e-67 Identity = 141/226 (62.39%), Postives = 162/226 (71.68%), Query Frame = 0 Query: 1 MGDIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLRGQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYEPKAKRXXXXXXXXXXXXXXXXXXXXXXXXXK---------VKGNPVASGEVSSMLMAQDLPAEINDEMLGVLFARFDGFQEIRLAGQRGIAFIEFRDELAASTALSGLNEYKLSPTHTLKLSYAKR 218 MGDIPPNQTLYVQNL +KL K +LKK LY+AFSAYGRVID+VAC+G +LRGQAWVV+DSVGSATTALRSLQGF F G+P+RI FA GKS+AVALR+G YEP +KR + V G +A+GEVSSMLMAQ+LP E +EML VLF RF GF EIRLAGQRGIAFIEFRDE++A TA N +KLS T LKL+YAKR Sbjct: 158 MGDIPPNQTLYVQNLNEKLNKVSLKKLLYLAFSAYGRVIDIVACRGESLRGQAWVVFDSVGSATTALRSLQGFPFLGKPMRIQFAKGKSNAVALREGTYEPGSKRRKRGEKDGKKKEESQKLSGSRDEGKRGKEAEAEEHVAGMALAAGEVSSMLMAQELPTECTEEMLAVLFRRFAGFHEIRLAGQRGIAFIEFRDEVSARTAFQAYNGFKLSQTDALKLTYAKR 383
BLAST of NO18G01980 vs. NCBI_GenBank
Match: XP_009038606.1 (hypothetical protein AURANDRAFT_28680 [Aureococcus anophagefferens] >EGB06862.1 hypothetical protein AURANDRAFT_28680 [Aureococcus anophagefferens]) HSP 1 Score: 197.6 bits (501), Expect = 4.000e-47 Identity = 117/218 (53.67%), Postives = 153/218 (70.18%), Query Frame = 0 Query: 1 MGDIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLRGQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYEPKAKRXXXXXXXXXXXXXXXXXXXXXXXXXKVKGNPVASGEVSSMLMAQDLPAEINDEMLGVLFARFDGFQEIRLA-GQRGIAFIEFRDELAASTALSGLNEYKLSPTHTLKLSYAKR 218 M + PNQT+Y+ NL +K+KK+ALKK +Y FS +G+++DVV C+G LRGQAWVV+ VG+AT ALR +QGF FF +P+RI FA KSD V+ G + + KR XXXXXXXXXXXXXXXXX N S++L AQDLP + ND ML +LF ++ GF+E+R+ G++GIAF+EF DE AS AL GL+ +KL+PT TL LS+AKR Sbjct: 1 MASVQPNQTVYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKRKREAPPPKXXXXXXXXXXXXXXXXXXXXXNATP----SNVLFAQDLPDDCNDMMLSILFQQYGGFKEVRMVPGKKGIAFVEFADETQASLALQGLDNFKLTPTDTLALSFAKR 214
BLAST of NO18G01980 vs. NCBI_GenBank
Match: KXZ49464.1 (hypothetical protein GPECTOR_21g690 [Gonium pectorale]) HSP 1 Score: 179.5 bits (454), Expect = 1.100e-41 Identity = 96/220 (43.64%), Postives = 135/220 (61.36%), Query Frame = 0 Query: 3 DIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLRGQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYEP-KAKRXXXXXXXXXXXXXXXXXXXXXXXXXKVKGNPVASGEVSS---MLMAQDLPAEINDEMLGVLFARFDGFQEIRLAGQR-GIAFIEFRDELAASTALSGLNEYKLSPTHTLKLSYAKR 218 D+PPNQT+Y+ NL +KL KE LKK LY FS +GR++DVV K LRGQAWVV+ +AT ALR+LQGF FF +P+RI +A GKSDAVA G Y+P K +R SG+ S+ +L Q+LP N+ MLG+LF +F GF+E+R+ R GIAF+EF ++L ++TA+ GL +K++P + + ++YAK+ Sbjct: 2 DVPPNQTIYLNNLYEKLSKEELKKCLYAMFSQFGRIMDVVVMKTYRLRGQAWVVFSDTAAATNALRTLQGFPFFDKPIRINYAKGKSDAVAKVDGTYKPDKKQRAQKNAAAREAMLKRPTGNKSTAAAGPSAHGGGGSGQASAPNKILFVQNLPENSNEAMLGMLFQQFPGFREVRMVEARPGIAFVEFENDLQSTTAMQGLQGFKVTPQNAMNITYAKQ 221
BLAST of NO18G01980 vs. NCBI_GenBank
Match: XP_002107818.1 (hypothetical protein TRIADDRAFT_18899 [Trichoplax adhaerens] >EDV28616.1 hypothetical protein TRIADDRAFT_18899 [Trichoplax adhaerens]) HSP 1 Score: 176.4 bits (446), Expect = 9.600e-41 Identity = 91/220 (41.36%), Postives = 136/220 (61.82%), Query Frame = 0 Query: 3 DIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLRGQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYEPKAKRXXXXXXXXXXXXXXXXXXXXXXXXXKVKGNPVASGE----VSSMLMAQDLPAEINDEMLGVLFARFDGFQEIRLA-GQRGIAFIEFRDELAASTALSGLNEYKLSPTHTLKLSYAKR 218 DIPPNQTLYV NL +K+KKE LKK LY FS +G ++D++A K +RGQA+VV++ + SAT ALR++QGF F+ +P+RI + KSDAVA + G Y P+ K+ +G P A+G + +L +LP E + ML +LF +F G++E+RL G+ IAF+EF E+ A+TA + LN +K++PTH + +++AK+ Sbjct: 4 DIPPNQTLYVNNLNEKVKKEELKKSLYAIFSQFGAILDIIAMKTLKMRGQAFVVFEDISSATNALRAMQGFPFYEKPMRITYCKSKSDAVAKKDGSYVPREKKVREKRKPD-------------------EGMPHAAGSQEELPNKILFLTNLPEETTELMLSMLFNQFPGYKEVRLVPGRHDIAFVEFESEIQAATARNSLNGFKITPTHQMNIAFAKK 204
BLAST of NO18G01980 vs. NCBI_GenBank
Match: XP_003059877.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH55829.1 predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 176.0 bits (445), Expect = 1.300e-40 Identity = 120/226 (53.10%), Postives = 157/226 (69.47%), Query Frame = 0 Query: 1 MGDIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLRGQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYEPKA--------KRXXXXXXXXXXXXXXXXXXXXXXXXXKVKGNPVASGEVSSMLMAQDLPAEINDEMLGVLFARFDGFQEIRLA-GQRGIAFIEFRDELAASTALSGLNEYKLSPTHTLKLSYAKR 218 MGDIPP T+YV NL +K+KKE LKK L+ FS +G++IDVVA K LRGQAWVV+ V SAT A+R++QGF FF +P+++ +A KSDA A G Y+P A ++XXXXXXXXXXXXXXXXXXXXXXXXX ++ +P S + +L Q LP ML +LF +F GF+E+R+ + GIAF+EF E AS AL GL +K++PTH++ LSYAK+ Sbjct: 1 MGDIPPCPTIYVNNLNEKIKKEELKKSLHAVFSQFGKIIDVVAVKTYKLRGQAWVVFQDVASATAAMRAVQGFPFFDKPMKLAYAKAKSDATAKLDGTYDPSARDPEARAKRKXXXXXXXXXXXXXXXXXXXXXXXXXPIRTDP--SAPPNEILFVQGLPEATTAAMLSMLFQQFPGFKEVRMVEAKPGIAFVEFTAETQASVALQGLQGFKINPTHSMTLSYAKK 224
BLAST of NO18G01980 vs. NCBI_GenBank
Match: XP_002947800.1 (hypothetical protein VOLCADRAFT_103581 [Volvox carteri f. nagariensis] >EFJ51333.1 hypothetical protein VOLCADRAFT_103581 [Volvox carteri f. nagariensis]) HSP 1 Score: 176.0 bits (445), Expect = 1.300e-40 Identity = 102/223 (45.74%), Postives = 140/223 (62.78%), Query Frame = 0 Query: 3 DIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLRGQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYEPKAKR-------XXXXXXXXXXXXXXXXXXXXXXXXXKVKGNPVASGEVSSMLMAQDLPAEINDEMLGVLFARFDGFQEIRLAGQR-GIAFIEFRDELAASTALSGLNEYKLSPTHTLKLSYAKR 218 DIPPNQT+Y+ NL +KL KE LKK LY FS +GR++DVVA K LRGQAWVV+ +AT ALR++QGF FF +P+RI +A GKSDAVA G Y+P K+ XXXXXXXXX + +L Q+LP N+ MLG+LF +F GF+E+R+ R GIAF+EF +++ ++TA+ GL +K++P + + +SYAK+ Sbjct: 2 DIPPNQTIYINNLYEKLGKEELKKCLYAMFSQFGRIMDVVAMKTYRLRGQAWVVFTDTAAATNALRTMQGFPFFDKPIRITYAKGKSDAVAKVDGTYKPDKKQRAQKNAAAREAMLKRPTGGKAAGXXXXXXXXXXXXXXXXXXNAPNKILFVQNLPENSNEAMLGMLFQQFPGFREVRMVEARPGIAFVEFENDMQSTTAMQGLQGFKITPANAMNISYAKQ 224
BLAST of NO18G01980 vs. NCBI_GenBank
Match: PNW73636.1 (hypothetical protein CHLRE_13g566700v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 175.6 bits (444), Expect = 1.600e-40 Identity = 97/231 (41.99%), Postives = 135/231 (58.44%), Query Frame = 0 Query: 3 DIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLRGQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYEPKAKRXXXXXXXXXXXXXXXXXXXXXXXXXKVKGNPVASGEVSS---------------MLMAQDLPAEINDEMLGVLFARFDGFQEIRLAGQR-GIAFIEFRDELAASTALSGLNEYKLSPTHTLKLSYAKR 218 DIPPNQT+YV NL +KL KE +KK LY FS +GRV+DVVA K LRGQAWVV+ +AT ALR++QGF FF +P+RI +A KSDAVA G Y+P K K PV++G V S +L Q+LP N+ MLG+LF +F GF+E+R+ R GIAF+E+ +E+ + TA+ GL +K++P + + +++AK+ Sbjct: 2 DIPPNQTIYVNNLYEKLSKEEMKKCLYAMFSQFGRVLDVVAMKTYRLRGQAWVVFTDTAAATNALRTMQGFPFFDKPIRITYAKTKSDAVAKVDGTYKPDKKSRAQKNAAAREAMLKRPAGN--------KPLPVSAGPVPSXXXXXXXXXXXAPNKILFVQNLPETSNEAMLGMLFQQFPGFREVRMVEARPGIAFVEYENEMQSGTAMQGLQGFKITPANAMNITFAKQ 224
BLAST of NO18G01980 vs. NCBI_GenBank
Match: GAX75127.1 (hypothetical protein CEUSTIGMA_g2571.t1 [Chlamydomonas eustigma]) HSP 1 Score: 174.9 bits (442), Expect = 2.800e-40 Identity = 93/218 (42.66%), Postives = 132/218 (60.55%), Query Frame = 0 Query: 3 DIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLRGQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYEP-KAKRXXXXXXXXXXXXXXXXXXXXXXXXXK-VKGNPVASGEVSSMLMAQDLPAEINDEMLGVLFARFDGFQEIRLAGQR-GIAFIEFRDELAASTALSGLNEYKLSPTHTLKLSYAKR 218 D+PPNQT+YV NL +KL KE LKK +Y FS +GR++DVVA K LRGQAWVV+ V +AT ALR++QGF FF +P+RI FA KSDAV+ G Y+P K++R + P + + +L Q+LP + ML +LF +F GF+E+R+ R GIAFIE+ +E+ + AL GL +K++P + + +SYAK+ Sbjct: 2 DVPPNQTIYVGNLYEKLPKEELKKCMYAMFSQFGRIVDVVALKTLRLRGQAWVVFSDVSAATNALRTMQGFPFFDKPIRIQFARTKSDAVSKLDGSYKPSKSERSKKNAAARDQLLKRNKERAASGLPSRGTASGPEGNSSPNKILFVQNLPEASTEAMLSLLFQQFPGFKEVRMVDSRPGIAFIEYENEVQSGVALQGLQGFKVTPQNAMAISYAKQ 219
BLAST of NO18G01980 vs. NCBI_GenBank
Match: XP_021977832.1 (U2 small nuclear ribonucleoprotein B'' [Helianthus annuus] >OTG18937.1 putative U2 small nuclear ribonucleoprotein B [Helianthus annuus]) HSP 1 Score: 174.1 bits (440), Expect = 4.800e-40 Identity = 90/222 (40.54%), Postives = 134/222 (60.36%), Query Frame = 0 Query: 3 DIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLRGQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYEPKAKRXXXXXXXXXXXXXXXXXXXXXXXXXKV------KGNPVASGEVSSMLMAQDLPAEINDEMLGVLFARFDGFQEIR-LAGQRGIAFIEFRDELAASTALSGLNEYKLSPTHTLKLSYAKR 218 DIPPNQT+YV+NL +K+KKE LK+ LY FS YGR++DVVA K LRGQAW+V+ V +A+ A+R +Q F F+ +P+RI +A GKSD +A + PK KR GN + +++L Q+LP + ++ML +LF +F GF+E+R +A + GIAF+EF DE +STA+ L +K++P +++ +SYAK+ Sbjct: 5 DIPPNQTIYVKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTAKLRGQAWIVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCIAKADNTFVPKEKRRKQEEKTEKKRDGPQATNGVRTDNNGAPAASYRNGNSQEATPPNNILFIQNLPHDTTEDMLQLLFKQFPGFKEVRMIAAKPGIAFVEFDDENESSTAMQSLQGFKITPQNSMAISYAKK 226 The following BLAST results are available for this feature:
BLAST of NO18G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G01980 ID=NO18G01980|Name=NO18G01980|organism=Nannochloropsis oceanica|type=gene|length=1997bpback to top protein sequence of NO18G01980.1 >NO18G01980.1-protein ID=NO18G01980.1-protein|Name=NO18G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=218bpback to top Synonyms
Publications
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