NO18G01980.1, NO18G01980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01980.1
Unique NameNO18G01980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1702
Alignment locationchr18:610676..612672 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:610676..612672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01980.1 vs.
Match: XP_005854192.1 (U2 small nuclear ribonucleoprotein B'', partial [Nannochloropsis gaditana CCMP526]; EKU22169.1 U2 small nuclear ribonucleoprotein B'', partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 274.2 bits (700), Expect = 3.400e-70
Identity = 151/226 (66.81%), Postives = 174/226 (76.99%), Query Frame = 0 
Query:    1 MGDIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLRGQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYEPKAKRQKR------EKAEREGGKGKETEGPRG---GGGEKVKGNPVASGEVSSMLMAQDLPAEINDEMLGVLFARFDGFQEIRLAGQRGIAFIEFRDELAASTALSGLNEYKLSPTHTLKLSYAKR 218
            MGDIPPNQTLYVQNL +KL K +LKK LY+AFSAYGRVID+VAC+G +LRGQAWVV+DSVGSATTALRSLQGF F G+P+RI FA GKS+AVALR+G YEP +KR+KR      +K E +   G   EG RG      E V G  +A+GEVSSMLMAQ+LP E  +EML VLF RF GF EIRLAGQRGIAFIEFRDE++A TA    N +KLS T  LKL+YAKR
Sbjct:   64 MGDIPPNQTLYVQNLNEKLNKVSLKKLLYLAFSAYGRVIDIVACRGESLRGQAWVVFDSVGSATTALRSLQGFPFLGKPMRIQFAKGKSNAVALREGTYEPGSKRRKRGEKDGKKKEESQKLSGSRDEGKRGKEAEAEEHVAGMALAAGEVSSMLMAQELPTECTEEMLAVLFRRFAGFHEIRLAGQRGIAFIEFRDEVSARTAFQAYNGFKLSQTDALKLTYAKR 289
The following BLAST results are available for this feature:
BLAST of NO18G01980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854192.13.400e-7066.81U2 small nuclear ribonucleoprotein B'', partial [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01980NO18G01980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01980.1NO18G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01980.1.cds1NO18G01980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01980.1.cds2NO18G01980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01980.1 ID=NO18G01980.1|Name=NO18G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp
TGAGAGAAGGTCACGGCGAGAATTCCTCATGATACGTCTGTCTATTTGTG
AAAATATTTGTGGATTGAGCAATTGTACATCGTATATGTAGTGGTGGGTG
AATTAATATCTTGTGGAGGCGAGAAGATGTATCGGCAAAAGACAAGGCAC
TGGTCACGACGACGGTAACCAGGTGTTATGCAACGACGTCATCGCGCAGG
TTAGGAGCAGCGGCGGCTTTGAGGTGGTAGACGACCCCTCCCCTCCCTCC
CTCCCTCCCTACCACCGACGAGACGAGACCCGCTGCCGCTCAGCGCCTTG
CACCCGCTGCACGCCAGCGATACTCCTTTGTACACTAGGCTTGGGCGCTG
GATAAGATGATGGCCCTGTGCGAGAGAGGAGTGGTGAATCGGTCGGACGT
GCCTGCTGTAGTGAAACAGCAGCACACGGTCGACAGCACGCGGTTGGCGA
CTTGCGAGACCAGATTTATTTGTGTGTCTCCAAACTTAGCTGGAAGCCAG
ACTTTCTTCAACGTCTGTTTCAAACATTCTGCTCTTACTCCTGCATGGCT
CCTCATGCGATCACATGGATGAAAAACGCATGCAGGCAGAGGGCGTGACG
ACTTTTTTCCCTCTCGCTCCTCCCCCTGTTCATATTTATGGTCCTTCTCT
TTCCGGCTAGTTGCCCCTCCACCTGGATGAGTAGACCATAAATGAATGAA
ACACATGCCATTATATCGTCCGGCCAATGCGCACACTTCGTCGTCACCCA
TTGCACACACACACAGGATCTGTCCCAAGAGTCGTAGCAGAGCCGCCGTC
GCCAAGTCAAAAATCATAAAAACGAGTTTGACACGCATCTAGCCAGCAGG
GCCCCCATAAAGAGCCCTCTTCGTCGAGCCGCACTCCTCCACCTCTCCCT
CTCCCACCCCAAACCACCGCAGACGCACCCACCCACCCACCCGCCATAAC
AATGGGTGACATCCCCCCCAATCAAACCTTGTACGTGCAAAACCTCCCGG
ACAAGCTTAAGAAAGAGGCGTTGAAGAAACAACTCTACATGGCCTTTTCA
GCCTACGGCCGCGTGATCGACGTTGTGGCTTGTAAGGGTAATAATTTAAG
AGGGCAAGCATGGGTTGTCTATGACAGTGTCGGTAGCGCTACCACTGCGT
TGAGAAGTCTGCAGGGTTTTCAGTTTTTTGGGAGGCCGCTGCGGATCTTC
TTTGCCACCGGGAAGAGTGATGCAGTGGCGTTAAGGCAGGGACAGTATGA
GCCGAAGGCGAAGAGACAGAAGAGGGAGAAGGCGGAGAGGGAGGGAGGGA
AGGGGAAGGAGACGGAAGGACCAAGAGGAGGAGGAGGAGAGAAGGTAAAG
GGGAACCCAGTGGCGAGTGGGGAGGTGAGCAGTATGCTGATGGCACAGGA
CTTGCCGGCGGAGATTAACGATGAGATGTTGGGTGTCCTGTTTGCACGCT
TTGATGGCTTCCAAGAAATCCGTCTAGCGGGGCAACGAGGCATTGCATTT
ATTGAGTTCAGGGATGAGCTCGCAGCAAGCACGGCTCTTTCCGGTCTTAA
CGAATACAAGCTTTCCCCTACGCATACGTTGAAACTGAGTTATGCGAAAA
GGTGATGAGGCGACAGAGGGAAAGAGGGGAGTGAGAGGTGCTGTAGGGGG
TGGGAGGGCACGGAGAAAACCAAAGAAAAATCCAGTGGGTATCTAAGTGG
TC
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protein sequence of NO18G01980.1

>NO18G01980.1-protein ID=NO18G01980.1-protein|Name=NO18G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MGDIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLR
GQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYE
PKAKRQKREKAEREGGKGKETEGPRGGGGEKVKGNPVASGEVSSMLMAQD
LPAEINDEMLGVLFARFDGFQEIRLAGQRGIAFIEFRDELAASTALSGLN
EYKLSPTHTLKLSYAKR*
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mRNA from alignment at chr18:610676..612672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01980.1 ID=NO18G01980.1|Name=NO18G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1997bp|location=Sequence derived from alignment at chr18:610676..612672+ (Nannochloropsis oceanica)
TGAGAGAAGGTCACGGCGAGAATTCCTCATGATACGTCTGTCTATTTGTG
AAAATATTTGTGGATTGAGCAATTGTACATCGTATATGTAGTGGTGGGTG
AATTAATATCTTGTGGAGGCGAGAAGATGTATCGGCAAAAGACAAGGTAC
GCACAAGGGTCTTAAGTGATGGAGGGCGGGGAGGCTTGCACGCATCGTTG
CTTTGTTCGATCATCATCATGACCCACTTGTCGCGTTTCTACTCTTATGC
CACGCACACATCGTACAGGCACTGGTCACGACGACGGTAACCAGGTGTTA
TGCAACGACGTCATCGCGCAGGTTAGGAGCAGCGGCGGCTTTGAGGTGGT
AGACGACCCCTCCCCTCCCTCCCTCCCTCCCTACCACCGACGAGACGAGA
CCCGCTGCCGCTCAGCGCCTTGCACCCGCTGCACGCCAGCGATACTCCTT
TGTACACTAGGCTTGGGCGCTGGATAAGATGATGGCCCTGTGCGAGAGAG
GAGTGGTGAATCGGTCGGACGTGCCTGCTGTAGTGAAACAGCAGCACACG
GTCGACAGCACGCGGTTGGCGACTTGCGAGACCAGATTTATTTGTGTGTC
TCCAAACTTAGCTGGAAGCCAGACTTTCTTCAACGTCTGTTTCAAACATT
CTGCTCTTACTCCTGCATGGCTCCTCATGCGATCACATGGATGAAAAACG
CATGCAGGCAGAGGGCGTGACGACTTTTTTCCCTCTCGCTCCTCCCCCTG
TTCATATTTATGGTCCTTCTCTTTCCGGCTAGTTGCCCCTCCACCTGGAT
GAGTAGACCATAAATGAATGAAACACATGCCATTATATCGTCCGGCCAAT
GCGCACACTTCGTCGTCACCCATTGCACACACACACAGGATCTGTCCCAA
GAGTCGTAGCAGAGCCGCCGTCGCCAAGTCAAAAATCATAAAAACGAGTT
TGACACGCATCTAGCCAGCAGGGCCCCCATAAAGAGCCCTCTTCGTCGAG
CCGCACTCCTCCACCTCTCCCTCTCCCACCCCAAACCACCGCAGACGCAC
CCACCCACCCACCCGCCATAACAATGGGTGACATCCCCCCCAATCAAACC
TTGTACGTGCAAAACCTCCCGGACAAGCTTAAGAAAGAGGCGTTGAAGAA
ACAACTCTACATGGCCTTTTCAGCCTACGGCCGCGTGATCGACGTTGTGG
CTTGTAAGGGTAATAATTTAAGAGGGCAAGCATGGGTTGTCTATGACAGT
GTCGGTAGCGCTACCACTGCGTTGAGAAGTCTGCAGGGTTTTCAGTTTTT
TGGGAGGCCGCTGCGGATCTTCTTTGCCACCGGGAAGAGTGATGCAGTGG
CGTTAAGGCAGGGACAGTATGAGCCGAAGGCGAAGAGACAGAAGAGGGAG
AAGGCGGAGAGGGAGGGAGGGAAGGGGAAGGAGACGGAAGGACCAAGAGG
AGGAGGAGGAGAGAAGGTAAAGGGGAACCCAGTGGCGAGTGGGGAGGTGA
GCAGTATGCTGATGGCACAGGACTTGCCGGCGGAGATTAACGATGAGGTG
AGAGTGGAGAGGATAGGGAGGAGGGAGGAGGACGAAGAGGAGGGGCTATA
GGGCCTTTACACCACTTCTACTTTTGATCGTGCGAATCTCAAGATCTAAT
TAAATCTGTGCCTCGCATTTGTTCCTCACCTCTTTCTCTCTCCTCTCCCT
CCCGGTCCTCTCTCCTACAGATGTTGGGTGTCCTGTTTGCACGCTTTGAT
GGCTTCCAAGAAATCCGTCTAGCGGGGCAACGAGGCATTGCATTTATTGA
GTTCAGGGATGAGCTCGCAGCAAGCACGGCTCTTTCCGGTCTTAACGAAT
ACAAGCTTTCCCCTACGCATACGTTGAAACTGAGTTATGCGAAAAGGTGA
TGAGGCGACAGAGGGAAAGAGGGGAGTGAGAGGTGCTGTAGGGGGTGGGA
GGGCACGGAGAAAACCAAAGAAAAATCCAGTGGGTATCTAAGTGGTC
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Coding sequence (CDS) from alignment at chr18:610676..612672+

>NO18G01980.1 ID=NO18G01980.1|Name=NO18G01980.1|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at chr18:610676..612672+ (Nannochloropsis oceanica)
ATGGGTGACATCCCCCCCAATCAAACCTTGTACGTGCAAAACCTCCCGGA
CAAGCTTAAGAAAGAGGCGTTGAAGAAACAACTCTACATGGCCTTTTCAG
CCTACGGCCGCGTGATCGACGTTGTGGCTTGTAAGGGTAATAATTTAAGA
GGGCAAGCATGGGTTGTCTATGACAGTGTCGGTAGCGCTACCACTGCGTT
GAGAAGTCTGCAGGGTTTTCAGTTTTTTGGGAGGCCGCTGCGGATCTTCT
TTGCCACCGGGAAGAGTGATGCAGTGGCGTTAAGGCAGGGACAGTATGAG
CCGAAGGCGAAGAGACAGAAGAGGGAGAAGGCGGAGAGGGAGGGAGGGAA
GGGGAAGGAGACGGAAGGACCAAGAGGAGGAGGAGGAGAGAAGGTAAAGG
GGAACCCAGTGGCGAGTGGGGAGGTGAGCAGTATGCTGATGGCACAGGAC
TTGCCGGCGGAGATTAACGATGAGATGTTGGGTGTCCTGTTTGCACGCTT
TGATGGCTTCCAAGAAATCCGTCTAGCGGGGCAACGAGGCATTGCATTTA
TTGAGTTCAGGGATGAGCTCGCAGCAAGCACGGCTCTTTCCGGTCTTAAC
GAATACAAGCTTTCCCCTACGCATACGTTGAAACTGAGTTATGCGAAAAG
GTGA
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Synonyms
Publications