NO18G01930, NO18G01930 (gene) Nannochloropsis oceanica

Overview
NameNO18G01930
Unique NameNO18G01930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1971
Alignment locationchr18:595177..597147 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:595177..597147 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G01930 vs. NCBI_GenBank
Match: EWM23399.1 (hypothetical protein Naga_100430g1 [Nannochloropsis gaditana])

HSP 1 Score: 134.0 bits (336), Expect = 1.600e-27
Identity = 63/89 (70.79%), Postives = 76/89 (85.39%), Query Frame = 0 
Query:  105 TSAQGGPWACFESAGAFPRVAHRHLYLWLDQILTSLPEDEQRRAKEVGPLESFYQEVANANAANSLYDHSKVTEFVNKPSPHSLLLFRK 194
            TSAQGG W+ FESAGAFPRVAHRHLYLWLDQ ++ LPE+E +R K VG L+SFY+EV  ANAAN+LYD +K+ EFV KPSP+SLLLF++
Sbjct:   88 TSAQGGSWSHFESAGAFPRVAHRHLYLWLDQKISELPENEAKRVKAVGRLDSFYEEVNRANAANTLYDAAKLKEFVAKPSPYSLLLFQE 176
The following BLAST results are available for this feature:
BLAST of NO18G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23399.11.600e-2770.79hypothetical protein Naga_100430g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004045NSK004045Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01930.1NO18G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|224079gene_8884Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100430g1gene7058Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01930.1NO18G01930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01930 ID=NO18G01930|Name=NO18G01930|organism=Nannochloropsis oceanica|type=gene|length=1971bp
ATGGAGGATTCAACGCTTGATGGCGGCAGCAATCGTGTGCAAGGCGGTGG
CGGGGCCATGGTTGCCCAAGAGCAAGACACATTGCTGCTCATGCCCTTGC
CCGCCGCAGCACCCGCCGAAACCCACCACCGTGATCACGATAGCCGTGGC
CACGAGGACCAGCAACACCAGCTGACCACCAACGTGGATAAGGGTGCCCT
CATACTGCCCTGCGAGCCCCATGTGGCTGCTCCTCGATCACTCTTGATTG
GCCCACCACCGTCAAGCAGCAGTAGCCTCCCTCCAGCCCCCACCGCCATC
ACACCCCCACTCACCTCGGCACAAGGCGGTCCTTGGGCATGCTTCGAGTC
TGCCGGCGCATTTCCTCGTGTCGCTCATCGACATCTCTACCTTTGGTTGG
ACCAAATATTGACCAGTCTGCCGGAAGACGAGCAACGGCGTGCGAAAGAG
GTGGGGCCGCTCGAGTCGTTTTACCAGGAGGTTGCCAATGCAAACGCAGC
TAATTCCCTGTACGACCACAGTAAGGTCACAGAATTTGTCAACAAACCTT
CTCCGCACTCCCTCCTCCTCTTCCGAAAGCTCGACCGAGATGACACCCCA
CCTATCATGCGCAAAAAGAGGAAGACGCTCAACCAGCAGCCGCAGCAGAG
CGACGACGACGACAACTTTGAAACCACCTCTACATCCCCCACCAGAGTCA
CAGCACTCAAACGCAGCAGAACCTACCAAAAAAATGATCAAACAATCACC
TCCACTGCCACGGCCCTCAACAGCAGCACTGGCACCATCAACCTCTCTAC
TAATGTCCTAAAGCGGTGGAATCGAAGCAACGGGATGATTAACTGGTTCC
TCTGGAAAGTCGGAGCGAAGCCCCCAGCCACCGAAGAGGTCCTACAGCTC
TCCCGCGTGCATGCTGCTAAGACGTTGTTGAAGAAAAGTAGTTCTGCCGC
CGCTGCGGCTGCTGCTGCTGTTTCAGCTGCTGCTGCTGCTGTGGTGACAG
GGGCAGGTGGTATGCCTGCTGATGCGCAGACACGGAGACGAAGGATGGGG
AGGGCTAAGGGAAGGAAGCCTGGTGAAGATAAGGGGGACGATGTGAAGGA
GGAGGGCGAGGAAGGGGCTGAAGGGTTGGGAAAGTTGGCAGGAGCAGTTG
AAGAGAGAAAAGGAGGCGAAGTAGGAGGAGAGGGAGGAGGAGGAGGAGGA
GAGGGAGGAGGAAGAGGAGGAGGAGAGGGGGAGGGTGCGAGCACCAGCAG
TCGCGGTAGCTGCAACAGCAACATTTTTAATCATATCCTATTCAAGCCCA
ACAGTACCCAGAAAGGAGAGGGCGAGAGCACCAGCGACCATCACGTCAGC
CGCAGCAGTAGCCACCACAACCACATTAGCAGCAGCAGCAGTAGCAGCAG
CAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCAGA
TAATAAACGAGAATTTGGCGAAGGAGAAGCAACCCCTGAACCCACTTACT
AGTGTTGTCGTTGCTGCTGCGGCTGGTGGTGGTGGTGATGGTGGTGCGAG
TACCACTACTCAGATAAGAGGAGGAGGAGGAGAAGACGGAGGGGAGGAAG
GAGAAACGAATGGAGACAAAGACAATATAGAGCAACAAGGGAAGGAAGAG
AAGAAACAGGAGAAAGCAGTAGGAGCAGCAGCAAGGGCGACAAGTTCTTT
AACCGAGGTAAAAGAAAAAGAGGAGATCCCACCTTACCTCTCCCTTCCCC
CCCCCTCCCTCCTTCCCTTCCTCGCCTTGCCACTCTCGACATGGCAGGCA
TCATGGCCGCAGATGCCGAGAATTTATTTAACGTCCTCTCAGCACGCCAC
GCTGAAGGAGGAGCAGGGGCAGGTCTGTCCCTCCCTGCCGTCCAAGCGGC
TGTCGAACAAGGGTTTTGGCGACGGGTGGAGACCGAGGGAGGAGGAAGTA
GAGAAGGAAGGGGGAAAGTAA
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protein sequence of NO18G01930.1

>NO18G01930.1-protein ID=NO18G01930.1-protein|Name=NO18G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=657bp
MEDSTLDGGSNRVQGGGGAMVAQEQDTLLLMPLPAAAPAETHHRDHDSRG
HEDQQHQLTTNVDKGALILPCEPHVAAPRSLLIGPPPSSSSSLPPAPTAI
TPPLTSAQGGPWACFESAGAFPRVAHRHLYLWLDQILTSLPEDEQRRAKE
VGPLESFYQEVANANAANSLYDHSKVTEFVNKPSPHSLLLFRKLDRDDTP
PIMRKKRKTLNQQPQQSDDDDNFETTSTSPTRVTALKRSRTYQKNDQTIT
STATALNSSTGTINLSTNVLKRWNRSNGMINWFLWKVGAKPPATEEVLQL
SRVHAAKTLLKKSSSAAAAAAAAVSAAAAAVVTGAGGMPADAQTRRRRMG
RAKGRKPGEDKGDDVKEEGEEGAEGLGKLAGAVEERKGGEVGGEGGGGGG
EGGGRGGGEGEGASTSSRGSCNSNIFNHILFKPNSTQKGEGESTSDHHVS
RSSSHHNHISSSSSSSSSSSSSSSSSSSSSSKQIINENLAKEKQPLNPLT
SVVVAAAAGGGGDGGASTTTQIRGGGGEDGGEEGETNGDKDNIEQQGKEE
KKQEKAVGAAARATSSLTEVKEKEEIPPYLSLPPPSLLPFLALPLSTWQA
SWPQMPRIYLTSSQHATLKEEQGQVCPSLPSKRLSNKGFGDGWRPREEEV
EKEGGK*
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Synonyms
Publications