NO18G01930.1, NO18G01930.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G01930.1
Unique Name	NO18G01930.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1971
Alignment location	chr18:595177..597147 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:595177..597147 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G01930.1 vs.
Match: EWM23399.1 (hypothetical protein Naga_100430g1 [Nannochloropsis gaditana])

HSP 1 Score: 142.5 bits (358), Expect = 4.600e-30
Identity = 86/178 (48.31%), Postives = 115/178 (64.61%), Query Frame = 0

Query:   20 MVAQEQDTLLLMPLPAAAPAETHHRDHDSRGHEDQQHQLTTNVDKGALILPCEPHVAAPRSLLIGPPPSSSSSL----PPAPTAITPPLTSAQGGPWACFESAGAFPRVAHRHLYLWLDQILTSLPEDEQRRAKEVGPLESFYQEVANANAANSLYDHSKVTEFVNKPSPHSLLLFRK 194
            MV  ++   LL+PL   AP         +   ++  HQ T +V +   +L  +   +A R+      P+S++S+    PP P    PP TSAQGG W+ FESAGAFPRVAHRHLYLWLDQ ++ LPE+E +R K VG L+SFY+EV  ANAAN+LYD +K+ EFV KPSP+SLLLF++
Sbjct:    9 MVIHQEVAPLLLPLACEAPPLLPPPSSPASNGQEA-HQPTISVTQ---LLCMDGQQSADRA------PTSNASVRTAPPPLPDPRLPPPTSAQGGSWSHFESAGAFPRVAHRHLYLWLDQKISELPENEAKRVKAVGRLDSFYEEVNRANAANTLYDAAKLKEFVAKPSPYSLLLFQE 176

The following BLAST results are available for this feature:

BLAST of NO18G01930.1 vs.

BLAST of NO18G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23399.1	4.600e-30	48.31	hypothetical protein Naga_100430g1 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G01930	NO18G01930	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01930.1	NO18G01930.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01930.1.cds1	NO18G01930.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:595177..597147-
coding sequence from alignment at chr18:595177..597147-

mRNA sequence

>NO18G01930.1 ID=NO18G01930.1|Name=NO18G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1971bp
ATGGAGGATTCAACGCTTGATGGCGGCAGCAATCGTGTGCAAGGCGGTGG
CGGGGCCATGGTTGCCCAAGAGCAAGACACATTGCTGCTCATGCCCTTGC
CCGCCGCAGCACCCGCCGAAACCCACCACCGTGATCACGATAGCCGTGGC
CACGAGGACCAGCAACACCAGCTGACCACCAACGTGGATAAGGGTGCCCT
CATACTGCCCTGCGAGCCCCATGTGGCTGCTCCTCGATCACTCTTGATTG
GCCCACCACCGTCAAGCAGCAGTAGCCTCCCTCCAGCCCCCACCGCCATC
ACACCCCCACTCACCTCGGCACAAGGCGGTCCTTGGGCATGCTTCGAGTC
TGCCGGCGCATTTCCTCGTGTCGCTCATCGACATCTCTACCTTTGGTTGG
ACCAAATATTGACCAGTCTGCCGGAAGACGAGCAACGGCGTGCGAAAGAG
GTGGGGCCGCTCGAGTCGTTTTACCAGGAGGTTGCCAATGCAAACGCAGC
TAATTCCCTGTACGACCACAGTAAGGTCACAGAATTTGTCAACAAACCTT
CTCCGCACTCCCTCCTCCTCTTCCGAAAGCTCGACCGAGATGACACCCCA
CCTATCATGCGCAAAAAGAGGAAGACGCTCAACCAGCAGCCGCAGCAGAG
CGACGACGACGACAACTTTGAAACCACCTCTACATCCCCCACCAGAGTCA
CAGCACTCAAACGCAGCAGAACCTACCAAAAAAATGATCAAACAATCACC
TCCACTGCCACGGCCCTCAACAGCAGCACTGGCACCATCAACCTCTCTAC
TAATGTCCTAAAGCGGTGGAATCGAAGCAACGGGATGATTAACTGGTTCC
TCTGGAAAGTCGGAGCGAAGCCCCCAGCCACCGAAGAGGTCCTACAGCTC
TCCCGCGTGCATGCTGCTAAGACGTTGTTGAAGAAAAGTAGTTCTGCCGC
CGCTGCGGCTGCTGCTGCTGTTTCAGCTGCTGCTGCTGCTGTGGTGACAG
GGGCAGGTGGTATGCCTGCTGATGCGCAGACACGGAGACGAAGGATGGGG
AGGGCTAAGGGAAGGAAGCCTGGTGAAGATAAGGGGGACGATGTGAAGGA
GGAGGGCGAGGAAGGGGCTGAAGGGTTGGGAAAGTTGGCAGGAGCAGTTG
AAGAGAGAAAAGGAGGCGAAGTAGGAGGAGAGGGAGGAGGAGGAGGAGGA
GAGGGAGGAGGAAGAGGAGGAGGAGAGGGGGAGGGTGCGAGCACCAGCAG
TCGCGGTAGCTGCAACAGCAACATTTTTAATCATATCCTATTCAAGCCCA
ACAGTACCCAGAAAGGAGAGGGCGAGAGCACCAGCGACCATCACGTCAGC
CGCAGCAGTAGCCACCACAACCACATTAGCAGCAGCAGCAGTAGCAGCAG
CAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCAGA
TAATAAACGAGAATTTGGCGAAGGAGAAGCAACCCCTGAACCCACTTACT
AGTGTTGTCGTTGCTGCTGCGGCTGGTGGTGGTGGTGATGGTGGTGCGAG
TACCACTACTCAGATAAGAGGAGGAGGAGGAGAAGACGGAGGGGAGGAAG
GAGAAACGAATGGAGACAAAGACAATATAGAGCAACAAGGGAAGGAAGAG
AAGAAACAGGAGAAAGCAGTAGGAGCAGCAGCAAGGGCGACAAGTTCTTT
AACCGAGGTAAAAGAAAAAGAGGAGATCCCACCTTACCTCTCCCTTCCCC
CCCCCTCCCTCCTTCCCTTCCTCGCCTTGCCACTCTCGACATGGCAGGCA
TCATGGCCGCAGATGCCGAGAATTTATTTAACGTCCTCTCAGCACGCCAC
GCTGAAGGAGGAGCAGGGGCAGGTCTGTCCCTCCCTGCCGTCCAAGCGGC
TGTCGAACAAGGGTTTTGGCGACGGGTGGAGACCGAGGGAGGAGGAAGTA
GAGAAGGAAGGGGGAAAGTAA

protein sequence of NO18G01930.1

>NO18G01930.1-protein ID=NO18G01930.1-protein|Name=NO18G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=657bp
MEDSTLDGGSNRVQGGGGAMVAQEQDTLLLMPLPAAAPAETHHRDHDSRG
HEDQQHQLTTNVDKGALILPCEPHVAAPRSLLIGPPPSSSSSLPPAPTAI
TPPLTSAQGGPWACFESAGAFPRVAHRHLYLWLDQILTSLPEDEQRRAKE
VGPLESFYQEVANANAANSLYDHSKVTEFVNKPSPHSLLLFRKLDRDDTP
PIMRKKRKTLNQQPQQSDDDDNFETTSTSPTRVTALKRSRTYQKNDQTIT
STATALNSSTGTINLSTNVLKRWNRSNGMINWFLWKVGAKPPATEEVLQL
SRVHAAKTLLKKSSSAAAAAAAAVSAAAAAVVTGAGGMPADAQTRRRRMG
RAKGRKPGEDKGDDVKEEGEEGAEGLGKLAGAVEERKGGEVGGEGGGGGG
EGGGRGGGEGEGASTSSRGSCNSNIFNHILFKPNSTQKGEGESTSDHHVS
RSSSHHNHISSSSSSSSSSSSSSSSSSSSSSKQIINENLAKEKQPLNPLT
SVVVAAAAGGGGDGGASTTTQIRGGGGEDGGEEGETNGDKDNIEQQGKEE
KKQEKAVGAAARATSSLTEVKEKEEIPPYLSLPPPSLLPFLALPLSTWQA
SWPQMPRIYLTSSQHATLKEEQGQVCPSLPSKRLSNKGFGDGWRPREEEV
EKEGGK*

mRNA from alignment at chr18:595177..597147-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G01930.1 ID=NO18G01930.1|Name=NO18G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1971bp|location=Sequence derived from alignment at chr18:595177..597147- (Nannochloropsis oceanica)
ATGGAGGATTCAACGCTTGATGGCGGCAGCAATCGTGTGCAAGGCGGTGG
CGGGGCCATGGTTGCCCAAGAGCAAGACACATTGCTGCTCATGCCCTTGC
CCGCCGCAGCACCCGCCGAAACCCACCACCGTGATCACGATAGCCGTGGC
CACGAGGACCAGCAACACCAGCTGACCACCAACGTGGATAAGGGTGCCCT
CATACTGCCCTGCGAGCCCCATGTGGCTGCTCCTCGATCACTCTTGATTG
GCCCACCACCGTCAAGCAGCAGTAGCCTCCCTCCAGCCCCCACCGCCATC
ACACCCCCACTCACCTCGGCACAAGGCGGTCCTTGGGCATGCTTCGAGTC
TGCCGGCGCATTTCCTCGTGTCGCTCATCGACATCTCTACCTTTGGTTGG
ACCAAATATTGACCAGTCTGCCGGAAGACGAGCAACGGCGTGCGAAAGAG
GTGGGGCCGCTCGAGTCGTTTTACCAGGAGGTTGCCAATGCAAACGCAGC
TAATTCCCTGTACGACCACAGTAAGGTCACAGAATTTGTCAACAAACCTT
CTCCGCACTCCCTCCTCCTCTTCCGAAAGCTCGACCGAGATGACACCCCA
CCTATCATGCGCAAAAAGAGGAAGACGCTCAACCAGCAGCCGCAGCAGAG
CGACGACGACGACAACTTTGAAACCACCTCTACATCCCCCACCAGAGTCA
CAGCACTCAAACGCAGCAGAACCTACCAAAAAAATGATCAAACAATCACC
TCCACTGCCACGGCCCTCAACAGCAGCACTGGCACCATCAACCTCTCTAC
TAATGTCCTAAAGCGGTGGAATCGAAGCAACGGGATGATTAACTGGTTCC
TCTGGAAAGTCGGAGCGAAGCCCCCAGCCACCGAAGAGGTCCTACAGCTC
TCCCGCGTGCATGCTGCTAAGACGTTGTTGAAGAAAAGTAGTTCTGCCGC
CGCTGCGGCTGCTGCTGCTGTTTCAGCTGCTGCTGCTGCTGTGGTGACAG
GGGCAGGTGGTATGCCTGCTGATGCGCAGACACGGAGACGAAGGATGGGG
AGGGCTAAGGGAAGGAAGCCTGGTGAAGATAAGGGGGACGATGTGAAGGA
GGAGGGCGAGGAAGGGGCTGAAGGGTTGGGAAAGTTGGCAGGAGCAGTTG
AAGAGAGAAAAGGAGGCGAAGTAGGAGGAGAGGGAGGAGGAGGAGGAGGA
GAGGGAGGAGGAAGAGGAGGAGGAGAGGGGGAGGGTGCGAGCACCAGCAG
TCGCGGTAGCTGCAACAGCAACATTTTTAATCATATCCTATTCAAGCCCA
ACAGTACCCAGAAAGGAGAGGGCGAGAGCACCAGCGACCATCACGTCAGC
CGCAGCAGTAGCCACCACAACCACATTAGCAGCAGCAGCAGTAGCAGCAG
CAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCAGA
TAATAAACGAGAATTTGGCGAAGGAGAAGCAACCCCTGAACCCACTTACT
AGTGTTGTCGTTGCTGCTGCGGCTGGTGGTGGTGGTGATGGTGGTGCGAG
TACCACTACTCAGATAAGAGGAGGAGGAGGAGAAGACGGAGGGGAGGAAG
GAGAAACGAATGGAGACAAAGACAATATAGAGCAACAAGGGAAGGAAGAG
AAGAAACAGGAGAAAGCAGTAGGAGCAGCAGCAAGGGCGACAAGTTCTTT
AACCGAGGTAAAAGAAAAAGAGGAGATCCCACCTTACCTCTCCCTTCCCC
CCCCCTCCCTCCTTCCCTTCCTCGCCTTGCCACTCTCGACATGGCAGGCA
TCATGGCCGCAGATGCCGAGAATTTATTTAACGTCCTCTCAGCACGCCAC
GCTGAAGGAGGAGCAGGGGCAGGTCTGTCCCTCCCTGCCGTCCAAGCGGC
TGTCGAACAAGGGTTTTGGCGACGGGTGGAGACCGAGGGAGGAGGAAGTA
GAGAAGGAAGGGGGAAAGTAA

Coding sequence (CDS) from alignment at chr18:595177..597147-

>NO18G01930.1 ID=NO18G01930.1|Name=NO18G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=1971bp|location=Sequence derived from alignment at chr18:595177..597147- (Nannochloropsis oceanica)
ATGGAGGATTCAACGCTTGATGGCGGCAGCAATCGTGTGCAAGGCGGTGG
CGGGGCCATGGTTGCCCAAGAGCAAGACACATTGCTGCTCATGCCCTTGC
CCGCCGCAGCACCCGCCGAAACCCACCACCGTGATCACGATAGCCGTGGC
CACGAGGACCAGCAACACCAGCTGACCACCAACGTGGATAAGGGTGCCCT
CATACTGCCCTGCGAGCCCCATGTGGCTGCTCCTCGATCACTCTTGATTG
GCCCACCACCGTCAAGCAGCAGTAGCCTCCCTCCAGCCCCCACCGCCATC
ACACCCCCACTCACCTCGGCACAAGGCGGTCCTTGGGCATGCTTCGAGTC
TGCCGGCGCATTTCCTCGTGTCGCTCATCGACATCTCTACCTTTGGTTGG
ACCAAATATTGACCAGTCTGCCGGAAGACGAGCAACGGCGTGCGAAAGAG
GTGGGGCCGCTCGAGTCGTTTTACCAGGAGGTTGCCAATGCAAACGCAGC
TAATTCCCTGTACGACCACAGTAAGGTCACAGAATTTGTCAACAAACCTT
CTCCGCACTCCCTCCTCCTCTTCCGAAAGCTCGACCGAGATGACACCCCA
CCTATCATGCGCAAAAAGAGGAAGACGCTCAACCAGCAGCCGCAGCAGAG
CGACGACGACGACAACTTTGAAACCACCTCTACATCCCCCACCAGAGTCA
CAGCACTCAAACGCAGCAGAACCTACCAAAAAAATGATCAAACAATCACC
TCCACTGCCACGGCCCTCAACAGCAGCACTGGCACCATCAACCTCTCTAC
TAATGTCCTAAAGCGGTGGAATCGAAGCAACGGGATGATTAACTGGTTCC
TCTGGAAAGTCGGAGCGAAGCCCCCAGCCACCGAAGAGGTCCTACAGCTC
TCCCGCGTGCATGCTGCTAAGACGTTGTTGAAGAAAAGTAGTTCTGCCGC
CGCTGCGGCTGCTGCTGCTGTTTCAGCTGCTGCTGCTGCTGTGGTGACAG
GGGCAGGTGGTATGCCTGCTGATGCGCAGACACGGAGACGAAGGATGGGG
AGGGCTAAGGGAAGGAAGCCTGGTGAAGATAAGGGGGACGATGTGAAGGA
GGAGGGCGAGGAAGGGGCTGAAGGGTTGGGAAAGTTGGCAGGAGCAGTTG
AAGAGAGAAAAGGAGGCGAAGTAGGAGGAGAGGGAGGAGGAGGAGGAGGA
GAGGGAGGAGGAAGAGGAGGAGGAGAGGGGGAGGGTGCGAGCACCAGCAG
TCGCGGTAGCTGCAACAGCAACATTTTTAATCATATCCTATTCAAGCCCA
ACAGTACCCAGAAAGGAGAGGGCGAGAGCACCAGCGACCATCACGTCAGC
CGCAGCAGTAGCCACCACAACCACATTAGCAGCAGCAGCAGTAGCAGCAG
CAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCAGA
TAATAAACGAGAATTTGGCGAAGGAGAAGCAACCCCTGAACCCACTTACT
AGTGTTGTCGTTGCTGCTGCGGCTGGTGGTGGTGGTGATGGTGGTGCGAG
TACCACTACTCAGATAAGAGGAGGAGGAGGAGAAGACGGAGGGGAGGAAG
GAGAAACGAATGGAGACAAAGACAATATAGAGCAACAAGGGAAGGAAGAG
AAGAAACAGGAGAAAGCAGTAGGAGCAGCAGCAAGGGCGACAAGTTCTTT
AACCGAGGTAAAAGAAAAAGAGGAGATCCCACCTTACCTCTCCCTTCCCC
CCCCCTCCCTCCTTCCCTTCCTCGCCTTGCCACTCTCGACATGGCAGGCA
TCATGGCCGCAGATGCCGAGAATTTATTTAACGTCCTCTCAGCACGCCAC
GCTGAAGGAGGAGCAGGGGCAGGTCTGTCCCTCCCTGCCGTCCAAGCGGC
TGTCGAACAAGGGTTTTGGCGACGGGTGGAGACCGAGGGAGGAGGAAGTA
GAGAAGGAAGGGGGAAAGTAA

Synonyms

Publications