NO18G01800, NO18G01800 (gene) Nannochloropsis oceanica

Overview
NameNO18G01800
Unique NameNO18G01800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1129
Alignment locationchr18:561917..563045 +

Link to JBrowse

Properties
Property NameValue
DescriptionVRR-NUC domain protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:561917..563045 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016788hydrolase activity, acting on ester bonds
Vocabulary: INTERPRO
TermDefinition
IPR014883VRR_NUC
Homology
The following BLAST results are available for this feature:
BLAST of NO18G01800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01800.1NO18G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604316gene_8867Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100189g1gene7070Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01800.1NO18G01800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01800 ID=NO18G01800|Name=NO18G01800|organism=Nannochloropsis oceanica|type=gene|length=1129bp
GGGGGAGGTGGGCGGCGACGAAGAGGAGGGAGGAGGAGGAAGAGAGGGAG
GAGAGAAAGAGAGGGAGGAGAATTACGAATATTGATGCTATGGCTGCTCT
TCCTCTTCCTCATCCTCCTTCTACGGCTGCTGCTGCTGTTGTTGTACGGC
AGAGGGGGGAAGGGGATATGATATATTTGACGCCTGAGGAAGAAGATGAG
GAGGTAGAGCTCATGAATATAGCGCAGGCAGAGGTGGACAGGGGGGAGAA
GGAGGGGGAGGAAGACGACGACGAGGACGAAGAGGGGGAGGGGAAGATGG
TGGAGGAGGAGGAAGATGAGAAAGAAGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAAGACGAGGAGGATGAAGACGAAGAAGAGAAAGAGGCAGCTGCTGC
CCTCCAAGGCGACGACCCTCCCAGTCCCACCGCCTCGCTCGCCGAAGCCG
AGAGCCAGGCCATGAGGGAGGGCAATAAAATGATGCTTCTTATGGGGGTT
GGGGTCCAGACACAGGAACCTTGGGAGGGGGTCTCGAGGGAGGAAAGGGG
GGAGGGAGAGTGTTCGATGGAGGAGGGGGAGAGGGAGGAGGAGGGCTCGT
GGAAGGGTGAGATGAGTATGACACCGACGTACCATTCATCATCTTCGTTG
TGGGAGGGGGATGGAGGGAAGGAGGACGAGGTGGAGGATGAAGGCGAGGA
TCCTGGAATTGAGATTAAGCTCGTGGAGGTGAAGAGTAAAAATGATTTTT
TGTCTGACCATCAGTTGGCATGGATTGACCGATTTGTGAAGGATGAGAGG
AGAAGAGGGAGGAGGAGGGGTGGGAAGGGAGAGACGGAGGTGAGGGAGCG
GAGGGAGGAAGGTCCGCCTTGCAGGTCGTTTGAGCTTTGCCATGTCAGGA
GTTTGGATCGGCCTGTGGAGGGTAAGAAAGGGGGAAAGCAGCGGTAAGAG
AAGGAGGAAGAGGAGGAAGAAGTGGATGAAACGATGGAGGGAGAGGAGAA
GGAGGAGGAGGCGGAGGAGGAGGGGGAGGAGGGGGAGGAAAAGGAGGAGT
AAATGCGGGCAAGAGGCGCATGTAAATTTAGCAAAACCCAAAAATTGTGG
TCTACGACATGTAGATAAGCAGGAGATTT
back to top

protein sequence of NO18G01800.1

>NO18G01800.1-protein ID=NO18G01800.1-protein|Name=NO18G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MAALPLPHPPSTAAAAVVVRQRGEGDMIYLTPEEEDEEVELMNIAQAEVD
RGEKEGEEDDDEDEEGEGKMVEEEEDEKEEEEEEEEEEEDEEDEDEEEKE
AAAALQGDDPPSPTASLAEAESQAMREGNKMMLLMGVGVQTQEPWEGVSR
EERGEGECSMEEGEREEEGSWKGEMSMTPTYHSSSSLWEGDGGKEDEVED
EGEDPGIEIKLVEVKSKNDFLSDHQLAWIDRFVKDERRRGRRRGGKGETE
VRERREEGPPCRSFELCHVRSLDRPVEGKKGGKQR*
back to top
Synonyms
Publications