NO18G01800.1, NO18G01800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01800.1
Unique NameNO18G01800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1129
Alignment locationchr18:561917..563045 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:561917..563045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01800.1 vs.
Match: EWM23386.1 (VRR-NUC domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 86.7 bits (213), Expect = 1.300e-13
Identity = 77/188 (40.96%), Postives = 97/188 (51.60%), Query Frame = 0 
Query:  101 AAAALQGDDPPSPTASLAEAESQAMREGNKMMLLMGVGVQTQEPWEGVS-REERGEGECSMEEGERE------EEGSWKGEMSMTPTYHSSSSLWEGDGGKEDEVEDEGEDPGIEIKLVEVKSKNDFLSDHQLAWIDRFVKDER--------RRGRRRGGKGETEVRER-REEGPPCRSFELCHVRSL 273
            ++A+++ D P S    L E E++A REG         G   +E  EG   REE G    +   G RE      EE S     S   ++   +S  EG+GG E E E+E EDP IE+KLVEVKSKNDFLS HQ AWI   ++DE+          GR  G KG  E   +     PP  SFELCHVRS+
Sbjct:    1 SSASMERDGPESLCVQLVERENEAWREGCGRREGRKPGAGREE--EGTDGREEEGWERRAGGGGSREGGLCEVEEISQTWGRSFMRSFQPGASRREGEGG-EGEEEEEEEDPSIEVKLVEVKSKNDFLSPHQEAWICELLRDEKGWNAEGGGEAGREGGRKGGREAGAKGGTAAPPTTSFELCHVRSV 185
The following BLAST results are available for this feature:
BLAST of NO18G01800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23386.11.300e-1340.96VRR-NUC domain protein, partial [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01800NO18G01800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01800.1NO18G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01800.1.cds1NO18G01800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01800.1 ID=NO18G01800.1|Name=NO18G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1129bp
GGGGGAGGTGGGCGGCGACGAAGAGGAGGGAGGAGGAGGAAGAGAGGGAG
GAGAGAAAGAGAGGGAGGAGAATTACGAATATTGATGCTATGGCTGCTCT
TCCTCTTCCTCATCCTCCTTCTACGGCTGCTGCTGCTGTTGTTGTACGGC
AGAGGGGGGAAGGGGATATGATATATTTGACGCCTGAGGAAGAAGATGAG
GAGGTAGAGCTCATGAATATAGCGCAGGCAGAGGTGGACAGGGGGGAGAA
GGAGGGGGAGGAAGACGACGACGAGGACGAAGAGGGGGAGGGGAAGATGG
TGGAGGAGGAGGAAGATGAGAAAGAAGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAAGACGAGGAGGATGAAGACGAAGAAGAGAAAGAGGCAGCTGCTGC
CCTCCAAGGCGACGACCCTCCCAGTCCCACCGCCTCGCTCGCCGAAGCCG
AGAGCCAGGCCATGAGGGAGGGCAATAAAATGATGCTTCTTATGGGGGTT
GGGGTCCAGACACAGGAACCTTGGGAGGGGGTCTCGAGGGAGGAAAGGGG
GGAGGGAGAGTGTTCGATGGAGGAGGGGGAGAGGGAGGAGGAGGGCTCGT
GGAAGGGTGAGATGAGTATGACACCGACGTACCATTCATCATCTTCGTTG
TGGGAGGGGGATGGAGGGAAGGAGGACGAGGTGGAGGATGAAGGCGAGGA
TCCTGGAATTGAGATTAAGCTCGTGGAGGTGAAGAGTAAAAATGATTTTT
TGTCTGACCATCAGTTGGCATGGATTGACCGATTTGTGAAGGATGAGAGG
AGAAGAGGGAGGAGGAGGGGTGGGAAGGGAGAGACGGAGGTGAGGGAGCG
GAGGGAGGAAGGTCCGCCTTGCAGGTCGTTTGAGCTTTGCCATGTCAGGA
GTTTGGATCGGCCTGTGGAGGGTAAGAAAGGGGGAAAGCAGCGGTAAGAG
AAGGAGGAAGAGGAGGAAGAAGTGGATGAAACGATGGAGGGAGAGGAGAA
GGAGGAGGAGGCGGAGGAGGAGGGGGAGGAGGGGGAGGAAAAGGAGGAGT
AAATGCGGGCAAGAGGCGCATGTAAATTTAGCAAAACCCAAAAATTGTGG
TCTACGACATGTAGATAAGCAGGAGATTT
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protein sequence of NO18G01800.1

>NO18G01800.1-protein ID=NO18G01800.1-protein|Name=NO18G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MAALPLPHPPSTAAAAVVVRQRGEGDMIYLTPEEEDEEVELMNIAQAEVD
RGEKEGEEDDDEDEEGEGKMVEEEEDEKEEEEEEEEEEEDEEDEDEEEKE
AAAALQGDDPPSPTASLAEAESQAMREGNKMMLLMGVGVQTQEPWEGVSR
EERGEGECSMEEGEREEEGSWKGEMSMTPTYHSSSSLWEGDGGKEDEVED
EGEDPGIEIKLVEVKSKNDFLSDHQLAWIDRFVKDERRRGRRRGGKGETE
VRERREEGPPCRSFELCHVRSLDRPVEGKKGGKQR*
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mRNA from alignment at chr18:561917..563045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01800.1 ID=NO18G01800.1|Name=NO18G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1129bp|location=Sequence derived from alignment at chr18:561917..563045+ (Nannochloropsis oceanica)
GGGGGAGGTGGGCGGCGACGAAGAGGAGGGAGGAGGAGGAAGAGAGGGAG
GAGAGAAAGAGAGGGAGGAGAATTACGAATATTGATGCTATGGCTGCTCT
TCCTCTTCCTCATCCTCCTTCTACGGCTGCTGCTGCTGTTGTTGTACGGC
AGAGGGGGGAAGGGGATATGATATATTTGACGCCTGAGGAAGAAGATGAG
GAGGTAGAGCTCATGAATATAGCGCAGGCAGAGGTGGACAGGGGGGAGAA
GGAGGGGGAGGAAGACGACGACGAGGACGAAGAGGGGGAGGGGAAGATGG
TGGAGGAGGAGGAAGATGAGAAAGAAGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAAGACGAGGAGGATGAAGACGAAGAAGAGAAAGAGGCAGCTGCTGC
CCTCCAAGGCGACGACCCTCCCAGTCCCACCGCCTCGCTCGCCGAAGCCG
AGAGCCAGGCCATGAGGGAGGGCAATAAAATGATGCTTCTTATGGGGGTT
GGGGTCCAGACACAGGAACCTTGGGAGGGGGTCTCGAGGGAGGAAAGGGG
GGAGGGAGAGTGTTCGATGGAGGAGGGGGAGAGGGAGGAGGAGGGCTCGT
GGAAGGGTGAGATGAGTATGACACCGACGTACCATTCATCATCTTCGTTG
TGGGAGGGGGATGGAGGGAAGGAGGACGAGGTGGAGGATGAAGGCGAGGA
TCCTGGAATTGAGATTAAGCTCGTGGAGGTGAAGAGTAAAAATGATTTTT
TGTCTGACCATCAGTTGGCATGGATTGACCGATTTGTGAAGGATGAGAGG
AGAAGAGGGAGGAGGAGGGGTGGGAAGGGAGAGACGGAGGTGAGGGAGCG
GAGGGAGGAAGGTCCGCCTTGCAGGTCGTTTGAGCTTTGCCATGTCAGGA
GTTTGGATCGGCCTGTGGAGGGTAAGAAAGGGGGAAAGCAGCGGTAAGAG
AAGGAGGAAGAGGAGGAAGAAGTGGATGAAACGATGGAGGGAGAGGAGAA
GGAGGAGGAGGCGGAGGAGGAGGGGGAGGAGGGGGAGGAAAAGGAGGAGT
AAATGCGGGCAAGAGGCGCATGTAAATTTAGCAAAACCCAAAAATTGTGG
TCTACGACATGTAGATAAGCAGGAGATTT
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Coding sequence (CDS) from alignment at chr18:561917..563045+

>NO18G01800.1 ID=NO18G01800.1|Name=NO18G01800.1|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at chr18:561917..563045+ (Nannochloropsis oceanica)
ATGGCTGCTCTTCCTCTTCCTCATCCTCCTTCTACGGCTGCTGCTGCTGT
TGTTGTACGGCAGAGGGGGGAAGGGGATATGATATATTTGACGCCTGAGG
AAGAAGATGAGGAGGTAGAGCTCATGAATATAGCGCAGGCAGAGGTGGAC
AGGGGGGAGAAGGAGGGGGAGGAAGACGACGACGAGGACGAAGAGGGGGA
GGGGAAGATGGTGGAGGAGGAGGAAGATGAGAAAGAAGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAAGACGAGGAGGATGAAGACGAAGAAGAGAAAGAG
GCAGCTGCTGCCCTCCAAGGCGACGACCCTCCCAGTCCCACCGCCTCGCT
CGCCGAAGCCGAGAGCCAGGCCATGAGGGAGGGCAATAAAATGATGCTTC
TTATGGGGGTTGGGGTCCAGACACAGGAACCTTGGGAGGGGGTCTCGAGG
GAGGAAAGGGGGGAGGGAGAGTGTTCGATGGAGGAGGGGGAGAGGGAGGA
GGAGGGCTCGTGGAAGGGTGAGATGAGTATGACACCGACGTACCATTCAT
CATCTTCGTTGTGGGAGGGGGATGGAGGGAAGGAGGACGAGGTGGAGGAT
GAAGGCGAGGATCCTGGAATTGAGATTAAGCTCGTGGAGGTGAAGAGTAA
AAATGATTTTTTGTCTGACCATCAGTTGGCATGGATTGACCGATTTGTGA
AGGATGAGAGGAGAAGAGGGAGGAGGAGGGGTGGGAAGGGAGAGACGGAG
GTGAGGGAGCGGAGGGAGGAAGGTCCGCCTTGCAGGTCGTTTGAGCTTTG
CCATGTCAGGAGTTTGGATCGGCCTGTGGAGGGTAAGAAAGGGGGAAAGC
AGCGGTAA
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Synonyms
Publications