NO18G01760, NO18G01760 (gene) Nannochloropsis oceanica

Overview
NameNO18G01760
Unique NameNO18G01760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2558
Alignment locationchr18:552215..554772 +

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Properties
Property NameValue
DescriptionDead box rna helicase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:552215..554772 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
Homology
[Close]
BLAST of NO18G01760 vs. NCBI_GenBank
Match: XP_005853396.1 (dead box rna helicase [Nannochloropsis gaditana CCMP526] >EKU22967.1 dead box rna helicase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 672.5 bits (1734), Expect = 1.200e-189
Identity = 342/443 (77.20%), Postives = 364/443 (82.17%), Query Frame = 0 
Query:  174 QTWWEKNEILVSGPGCELFLPTLTFSGANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFALPGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGLDLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSYLVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLAREFLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDNRVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEVPLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAHTFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPKDGMEVKKATKIVFGDD 617
            Q WWE+NEILVSGPGC+ FLPTL+F+G  FP DLL CT+GF  PTPIQAQCWPVLM GRDIIGIAETGSGKTLTF LPGL  IR   K G   GGR   VPRMLVVAPTRELAMQSAEV+DGV+ G  LRSICLFGGV K EQRQALR GVDI+VATPGRLADLMEEGECDLS VSYLVLDEADRMLDQGFEQAIRGI+  C P  +RQTALFSATWP +IQ LA EFL  PVKVTIGGEDLSSNKRV+QVVEV+GEF+RE RLR LL QYHG+RDNRVL+FALYKK                      + +        KFKTKEVPLL+ATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGK GIAHTFFHQGDKGNAGALVNTL QAGQEVP  L+KFGTAVKKKEHKLYGAFGP++GME KKATKIVF DD
Sbjct:  177 QAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFILPGLERIR---KAGAPDGGRAGHVPRMLVVAPTRELAMQSAEVIDGVVEGSGLRSICLFGGVPKQEQRQALRGGVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKK-----------------AFMETRARATASPPSTKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKKGIAHTFFHQGDKGNAGALVNTLRQAGQEVPPALLKFGTAVKKKEHKLYGAFGPREGMEEKKATKIVFADD 599
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BLAST of NO18G01760 vs. NCBI_GenBank
Match: XP_008867979.1 (hypothetical protein H310_05119 [Aphanomyces invadans] >ETW03750.1 hypothetical protein H310_05119 [Aphanomyces invadans])

HSP 1 Score: 532.7 bits (1371), Expect = 1.500e-147
Identity = 272/438 (62.10%), Postives = 328/438 (74.89%), Query Frame = 0 
Query:  178 EKNEILVSGPGCELFLPTLTFSGANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFALPGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGLDLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSYLVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLAREFLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDNRVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEVPLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAHTFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPKDGMEVKKATKIVFGD 616
            ++N++ +SG  C L+ P L+F   NFP  ++  T GF  PTPIQ+QCWP+L +GRDIIGIA+TGSGKTL FA+PGLVHI  +VK+     G     P MLVVAPTRELA+Q A+V+        + SIC++GGV KHEQ++ L+QGV +VVATPGRL DLMEE  C L  V+Y VLDEADRMLD GFE+ IR II  C P  +RQ A+FSATWPQSIQ LA EFL +PVKVTIG EDLS++  V Q+VEV+ EF R+ ++  LL++YH  R NRVL+F LYKKEA R+EQ LQR+G++C  IHGDKGQ  R+ A++ FK+ ++PLLIATDVAARGLDIPDVE V+NYSFPLTIEDYVHRIGRTGR GK GI+HTFF   DK  AG LVN L ++   VP +L KFGT VKKKEHKLYGAF  KD    KKATKI F D
Sbjct:  112 QQNQMTMSGNHC-LYRPVLSFKEINFPKHMMTSTTGFAKPTPIQSQCWPILTSGRDIIGIAQTGSGKTLAFAIPGLVHISDQVKKNANLKG-----PIMLVVAPTRELAIQCADVISVAGTAASISSICIYGGVPKHEQKRQLKQGVHVVVATPGRLKDLMEEKACSLKHVTYCVLDEADRMLDDGFEKDIRLIIGGCHP--ERQIAMFSATWPQSIQKLAHEFLTDPVKVTIGSEDLSASANVTQIVEVVDEFGRDAKIDGLLRKYHSSRKNRVLVFVLYKKEAVRVEQMLQRKGWSCTAIHGDKGQQQRMEALDAFKSGQIPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGISHTFFTNFDKPKAGELVNLLRESNATVPEELTKFGTHVKKKEHKLYGAFA-KDIDMTKKATKITFDD 540
[Close]
BLAST of NO18G01760 vs. NCBI_GenBank
Match: XP_009837866.1 (hypothetical protein H257_12387 [Aphanomyces astaci] >ETV72638.1 hypothetical protein H257_12387 [Aphanomyces astaci])

HSP 1 Score: 530.0 bits (1364), Expect = 9.700e-147
Identity = 271/438 (61.87%), Postives = 325/438 (74.20%), Query Frame = 0 
Query:  178 EKNEILVSGPGCELFLPTLTFSGANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFALPGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGLDLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSYLVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLAREFLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDNRVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEVPLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAHTFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPKDGMEVKKATKIVFGD 616
            +++++++SG  C L+ P LTF   NFP  ++  T GF  PTPIQ+QCWP+L +GRDIIGIA+TGSGKTL FA+PGLVHI  +VK+     G     P MLVVAPTRELA+Q A+V+    N   + SIC++GGV KHEQ++ L+ GV +VVATPGRL DLMEE  C L  V+Y VLDEADRMLD GFE+ IR II  C P  +RQ A+FSATWPQSIQ LA EFL  PVKVTIG EDLS++  V Q+VEV+ EF R+ ++  LL++YH  R NRVL+F LYKKEA R+EQ LQR+G+ C  IHGDKGQ  R+ A++ FK+ ++PLLIATDVAARGLDIPDVE V+NYSFPLTIEDYVHRIGRTGR GK GI+HTFF   DK  AG LVN L  +   VP +L KFGT VKKKEHKLYGAF     M  KKATKI F D
Sbjct:  126 QRHQMIMSGNDC-LYRPLLTFKEVNFPKHMMTSTTGFATPTPIQSQCWPILTSGRDIIGIAQTGSGKTLAFAIPGLVHIADQVKKNASIKG-----PIMLVVAPTRELAIQCADVIAIAGNAASISSICIYGGVPKHEQKRQLKAGVHVVVATPGRLKDLMEERACSLKHVTYCVLDEADRMLDDGFEKDIRVIIGGCHP--ERQIAMFSATWPQSIQKLAHEFLTNPVKVTIGSEDLSASANVTQIVEVVDEFGRDAKIDGLLRKYHASRKNRVLVFVLYKKEAVRVEQMLQRKGWACTAIHGDKGQQQRMEALDAFKSGQIPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGISHTFFTNFDKPKAGELVNLLRDSNAAVPDELTKFGTHVKKKEHKLYGAFAKNIDM-TKKATKITFDD 554
[Close]
BLAST of NO18G01760 vs. NCBI_GenBank
Match: XP_008611814.1 (hypothetical protein SDRG_07740 [Saprolegnia diclina VS20] >EQC34942.1 hypothetical protein SDRG_07740 [Saprolegnia diclina VS20])

HSP 1 Score: 528.5 bits (1360), Expect = 2.800e-146
Identity = 269/440 (61.14%), Postives = 331/440 (75.23%), Query Frame = 0 
Query:  178 EKNEILVSGPGCELFLPTLTFSGANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFALPGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGLDLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSYLVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLAREFLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDNRVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEVPLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAHTFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPKDGMEVKKATKIVFGDDD 618
            ++N + +SG  C L+ P L+F+ A FP  +L   + F  PTPIQ+QCWP+L +GRDIIGIA+TGSGKTL F++PGLVHI  ++K    K G     P MLVVAPTRELA+Q A+V+      +++ S+CL+GGV KHEQ++AL+ GV +VVATPGRL DL++E  C L+ VSY+VLDEADRMLD GFE+ IR I+ EC    +RQ A+FSATWPQSIQ LA EFL +PVKVTIG +DL++++ V Q+VEV+ EF R+ +L  LL++YHG R NRVL+F LYKKEA R+E  LQR+G+ C  IHGDKGQ  R+ A+E FK+  +PLLIATDVAARGLDIPDVE V+NYSFPLTIEDYVHRIGRTGR GK GI+HTFF   DK  AG LVN L ++   VP +L KFGT VKKKEHKLYGAF     M  KKATKI FGD D
Sbjct:  107 QENHMTMSGNHC-LYRPILSFADAPFPKAMLKSCENFAKPTPIQSQCWPILTSGRDIIGIAQTGSGKTLAFSVPGLVHITDQLKTNPKKKG-----PIMLVVAPTRELAVQCADVIAVAGKSVNINSLCLYGGVPKHEQKRALKAGVQVVVATPGRLKDLVQEKSCSLANVSYIVLDEADRMLDDGFEKDIRLIMAECHA--ERQIAMFSATWPQSIQKLAHEFLEDPVKVTIGSDDLAASENVTQIVEVVDEFGRDAKLDGLLKKYHGSRKNRVLVFVLYKKEAVRVETMLQRKGWKCTAIHGDKGQAQRMEALEAFKSGTIPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGISHTFFTNHDKPKAGELVNLLRESNAPVPEELTKFGTHVKKKEHKLYGAFAKNVDMN-KKATKITFGDSD 537
[Close]
BLAST of NO18G01760 vs. NCBI_GenBank
Match: XP_008906493.1 (hypothetical protein PPTG_12047 [Phytophthora parasitica INRA-310] >ETI45992.1 hypothetical protein F443_09581 [Phytophthora parasitica P1569] >ETK85937.1 hypothetical protein L915_09376 [Phytophthora parasitica] >ETL39381.1 hypothetical protein L916_09280 [Phytophthora parasitica] >ETL92496.1 hypothetical protein L917_09213 [Phytophthora parasitica] >ETM45799.1 hypothetical protein L914_09237 [Phytophthora parasitica] >ETN08205.1 hypothetical protein PPTG_12047 [Phytophthora parasitica INRA-310] >ETO74685.1 hypothetical protein F444_09643 [Phytophthora parasitica P1976] >ETP15766.1 hypothetical protein F441_09513 [Phytophthora parasitica CJ01A1] >ETP43853.1 hypothetical protein F442_09486 [Phytophthora parasitica P10297] >KUF81492.1 DEAD-box ATP-dependent RNA helicase 5 [Phytophthora nicotianae])

HSP 1 Score: 526.2 bits (1354), Expect = 1.400e-145
Identity = 268/440 (60.91%), Postives = 329/440 (74.77%), Query Frame = 0 
Query:  178 EKNEILVSGPGCELFLPTLTFSGANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFALPGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGLDLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSYLVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLAREFLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDNRVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEVPLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAHTFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPKDGMEVKKATKIVFGDDD 618
            E N++++SG  C L+ P L+F    F +  +  TKGF  PTPIQ+QCWP+L +GRDIIGIAETGSGKTL F++PGL+HI  + +      G     PRMLVVAPTRELAMQS+ V+        L+SIC++GGV KH Q++ALR GV +VVATPGRL DL+EE  C+LS+V+++VLDEADRMLD+GFE+ IR II    P  +RQ A+FSATWPQSIQ LA EFL +PVKVTIG ++L+++  V Q+VEV+ +  R+ R  ALLQ+YH  R NR+L+F LYKKEA R+E+ L ++G+NC+ IHGD+ Q  R  A+E+FK+ EVPLLIATDVAARGLDIP VE V+NYSFPLTIEDYVHRIGRTGR GK G AHTFF   DK  AG LVN L ++ QEVP DL KFGT VKKKEHKLYGAF  K+    KKATKI F  DD
Sbjct:  130 EANQMILSGNNC-LYRPVLSFDDVTFESKFMKTTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPEVSPKYPG-----PRMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKHTQKKALRDGVHVVVATPGRLKDLVEERSCNLSKVTFVVLDEADRMLDEGFEKDIRAIIGSTHP--ERQIAMFSATWPQSIQKLAHEFLNDPVKVTIGSDELAASHNVTQIVEVIEDRARDARAHALLQKYHSSRKNRILLFVLYKKEADRVERMLHQRGWNCIAIHGDRSQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPGVEYVLNYSFPLTIEDYVHRIGRTGRGGKKGTAHTFFTANDKPRAGELVNLLRESNQEVPKDLTKFGTHVKKKEHKLYGAFA-KNIDATKKATKITFDSDD 560
[Close]
BLAST of NO18G01760 vs. NCBI_GenBank
Match: XP_002908093.1 (DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] >EEY61176.1 DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 526.2 bits (1354), Expect = 1.400e-145
Identity = 268/440 (60.91%), Postives = 329/440 (74.77%), Query Frame = 0 
Query:  178 EKNEILVSGPGCELFLPTLTFSGANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFALPGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGLDLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSYLVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLAREFLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDNRVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEVPLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAHTFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPKDGMEVKKATKIVFGDDD 618
            E N++++SG  C L+ P L+F    F +  +  TKGF  PTPIQ+QCWP+L +GRDIIGIAETGSGKTL F++PGL+HI  + +      G     PRMLVVAPTRELAMQS+ V+        L+SIC++GGV KH Q++ALR GV +VVATPGRL DL+EE  C+LS+V+++VLDEADRMLD+GFE+ IR II    P  +RQ A+FSATWPQSIQ LA EFL +PVKVTIG ++L+++  V Q+VEV+ +  R+ R  ALLQ+YH  R NR+L+F LYKKEA R+E+ L ++G+NC+ IHGD+ Q  R  A+E+FK+ EVPLLIATDVAARGLDIP VE V+NYSFPLTIEDYVHRIGRTGR GK G AHTFF   DK  AG LVN L ++ QEVP DL KFGT VKKKEHKLYGAF  K+    KKATKI F  DD
Sbjct:  133 ETNQMILSGNNC-LYRPVLSFDDVTFESKFMKTTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPEVSHKHPG-----PRMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKHTQKKALRDGVHVVVATPGRLKDLVEERSCNLSKVTFVVLDEADRMLDEGFEKDIRAIIGSTHP--ERQIAMFSATWPQSIQKLAHEFLNDPVKVTIGSDELAASHNVTQIVEVVEDRARDSRAHALLQKYHASRKNRILLFVLYKKEADRVERMLHQRGWNCIAIHGDRNQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPGVEYVMNYSFPLTIEDYVHRIGRTGRGGKKGTAHTFFTANDKPRAGELVNLLRESNQEVPKDLTKFGTHVKKKEHKLYGAFA-KNIDATKKATKITFDSDD 563
[Close]
BLAST of NO18G01760 vs. NCBI_GenBank
Match: KUF93881.1 (Gag-Pol polyprotein [Phytophthora nicotianae])

HSP 1 Score: 526.2 bits (1354), Expect = 1.400e-145
Identity = 268/440 (60.91%), Postives = 329/440 (74.77%), Query Frame = 0 
Query:  178 EKNEILVSGPGCELFLPTLTFSGANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFALPGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGLDLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSYLVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLAREFLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDNRVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEVPLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAHTFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPKDGMEVKKATKIVFGDDD 618
            E N++++SG  C L+ P L+F    F +  +  TKGF  PTPIQ+QCWP+L +GRDIIGIAETGSGKTL F++PGL+HI  + +      G     PRMLVVAPTRELAMQS+ V+        L+SIC++GGV KH Q++ALR GV +VVATPGRL DL+EE  C+LS+V+++VLDEADRMLD+GFE+ IR II    P  +RQ A+FSATWPQSIQ LA EFL +PVKVTIG ++L+++  V Q+VEV+ +  R+ R  ALLQ+YH  R NR+L+F LYKKEA R+E+ L ++G+NC+ IHGD+ Q  R  A+E+FK+ EVPLLIATDVAARGLDIP VE V+NYSFPLTIEDYVHRIGRTGR GK G AHTFF   DK  AG LVN L ++ QEVP DL KFGT VKKKEHKLYGAF  K+    KKATKI F  DD
Sbjct:  115 EANQMILSGNNC-LYRPVLSFDDVTFESKFMKTTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPEVSPKYPG-----PRMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKHTQKKALRDGVHVVVATPGRLKDLVEERSCNLSKVTFVVLDEADRMLDEGFEKDIRAIIGSTHP--ERQIAMFSATWPQSIQKLAHEFLNDPVKVTIGSDELAASHNVTQIVEVIEDRARDARAHALLQKYHSSRKNRILLFVLYKKEADRVERMLHQRGWNCIAIHGDRSQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPGVEYVLNYSFPLTIEDYVHRIGRTGRGGKKGTAHTFFTANDKPRAGELVNLLRESNQEVPKDLTKFGTHVKKKEHKLYGAFA-KNIDATKKATKITFDSDD 545
[Close]
BLAST of NO18G01760 vs. NCBI_GenBank
Match: OQR85422.1 (DEAD/DEAH box RNA helicase [Achlya hypogyna])

HSP 1 Score: 521.5 bits (1342), Expect = 3.400e-144
Identity = 266/440 (60.45%), Postives = 329/440 (74.77%), Query Frame = 0 
Query:  178 EKNEILVSGPGCELFLPTLTFSGANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFALPGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGLDLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSYLVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLAREFLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDNRVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEVPLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAHTFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPKDGMEVKKATKIVFGDDD 618
            +++ + +SG  C L+ P L+F+ A FP  +L   + F  PTPIQ+QCWP+L +GRDIIGIA+TGSGKTL F++PGLVHI  ++K    K G     P MLVVAPTRELA+Q AEV+      +++ S+CL+GGV KHEQ++AL+ GV +VVATPGRL DL++E  C L+ V+Y+VLDEADRMLD GFE+ IR I+ EC    +RQ A+FSATWPQSIQ LA EFL +PVKVTIG +DL++++ V Q+VEV+ EF R+ +L  LL++YHG R NRVL+F LYKKEA R+E  L R+G+ C  IHGDKGQ  R+ A+E FK+ + PLLIATDVAARGLDIPDVE V+NYSFPLTIEDYVHRIGRTGR GK G +HTFF   DK  AG LVN L ++   VP +L KFGT VKKKEHKLYGAF  KD    KKATKI F  DD
Sbjct:  113 QEHHMTMSGNKC-LYRPILSFADATFPKAMLKSCENFAKPTPIQSQCWPILTSGRDIIGIAQTGSGKTLAFSVPGLVHIADQLKANKSKKG-----PIMLVVAPTRELAVQCAEVISEAGKAINISSLCLYGGVPKHEQKRALKAGVQVVVATPGRLKDLVQEKSCSLANVTYVVLDEADRMLDDGFEKDIRLIMGEC--HSERQIAMFSATWPQSIQKLAHEFLEDPVKVTIGSDDLAASENVTQIVEVVDEFGRDAKLDGLLKKYHGSRKNRVLVFVLYKKEAVRVETMLMRKGWKCTAIHGDKGQAQRMEALEAFKSGKTPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGTSHTFFTNHDKPKAGELVNLLRESNAPVPEELTKFGTHVKKKEHKLYGAFA-KDMDMSKKATKITFDSDD 543
[Close]
BLAST of NO18G01760 vs. NCBI_GenBank
Match: XP_009525994.1 (hypothetical protein PHYSODRAFT_300186 [Phytophthora sojae] >EGZ16936.1 hypothetical protein PHYSODRAFT_300186 [Phytophthora sojae])

HSP 1 Score: 519.6 bits (1337), Expect = 1.300e-143
Identity = 267/439 (60.82%), Postives = 323/439 (73.58%), Query Frame = 0 
Query:  178 EKNEILVSGPGCELFLPTLTFSGANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFALPGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGLDLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSYLVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLAREFLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDNRVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEVPLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAHTFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPKDGMEVKKATKIVFGDD 617
            E N++++SG  C L+ P L+F    F A  +  TKGF  PTPIQ+QCWP+L +GRDIIGIAETGSGKTL F++PGL+HI  +        G     PRMLVVAPTRELAMQS+ V+        L+SIC++GGV K  Q++ALR GV +VVATPGRL DL+EE  C+LS+V+++VLDEADRMLD GFE+ IR II    P  +RQ A+FSATWPQSIQ LA EFL +PVKVTIG ++L+++  V Q+VEV+ +  R+ R  ALLQ+YH  R NRVL+F LYKKEA R+E+ L ++G+NC+ IHGD+ Q  R  A+E+FK+ EVPLLIATDVAARGLDIP VE V+NYSFPLTIEDYVHRIGRTGR GK G AHTFF   DK  AG LVN L  + QEVP DL KFGT VKKKEHKLYGAF     +  KKATKI F  D
Sbjct:  133 EANQMILSGNNC-LYRPVLSFDDVTFEAKFMKTTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPAVSPKHPG-----PRMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKQAQKKALRDGVHVVVATPGRLKDLVEERSCNLSKVTFVVLDEADRMLDDGFEKDIRAIIGSTHP--ERQIAMFSATWPQSIQKLAHEFLNDPVKVTIGSDELAASGNVTQIVEVIDDRARDARAHALLQKYHSSRKNRVLLFVLYKKEADRVERMLHQRGWNCIAIHGDRSQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPGVEYVLNYSFPLTIEDYVHRIGRTGRGGKKGTAHTFFTANDKPRAGELVNLLRDSNQEVPNDLTKFGTHVKKKEHKLYGAFAKNIDVN-KKATKITFDSD 562
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BLAST of NO18G01760 vs. NCBI_GenBank
Match: XP_024580211.1 (dead box rna helicase [Plasmopara halstedii] >CEG43842.1 dead box rna helicase [Plasmopara halstedii])

HSP 1 Score: 519.2 bits (1336), Expect = 1.700e-143
Identity = 266/440 (60.45%), Postives = 326/440 (74.09%), Query Frame = 0 
Query:  178 EKNEILVSGPGCELFLPTLTFSGANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFALPGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGLDLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSYLVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLAREFLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDNRVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEVPLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAHTFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPKDGMEVKKATKIVFGDDD 618
            E N++++SG  C L+ P L+F    F +  +  TK F  PTPIQ+QCWP+L +GRDIIGIAETGSGKTL FA+PGL+HI  + +      G     PRMLVVAPTRELAMQS+ V+        L+SIC++GGV K  Q++ALR G+ +VVATPGRL DL+EE  C+LS+V+Y+VLDEADRMLD+GFE+ IR II    P  +RQ A+FSATWPQSIQ LA EFL +PVKVTIG ++L+++  V Q+VEV+ +  R+ R  ALLQ+YH  R NR+L+F LYKKEA R+E+ L ++G++C+ IHGD+ Q  R  A+E+FK+ EVPLLIATDVAARGLDIP VE VINYSFPLTIEDYVHRIGRTGR GK G AHTFF   DK  AG LVN L +  QEVP DL KFGT VKKKEHKLYGAF  K+    KKATKI F  D+
Sbjct:  131 EANQMILSGNNC-LYRPVLSFDDVTFESKFMKTTKDFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFAIPGLIHIAAQPEVSHKHPG-----PRMLVVAPTRELAMQSSAVISEAGKNCGLKSICIYGGVPKQAQKKALRDGIHVVVATPGRLRDLLEERSCNLSKVTYVVLDEADRMLDEGFEKDIRAIIGSTHP--ERQIAMFSATWPQSIQKLAHEFLNDPVKVTIGSDELAASHNVTQIVEVIDDRARDARAHALLQKYHSSRKNRILLFVLYKKEADRVERMLHQRGWHCVAIHGDRTQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPGVEYVINYSFPLTIEDYVHRIGRTGRGGKKGTAHTFFTANDKPRAGELVNLLREGKQEVPKDLTKFGTHVKKKEHKLYGAFA-KNIDAAKKATKITFDSDN 561
The following BLAST results are available for this feature:
BLAST of NO18G01760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853396.11.200e-18977.20dead box rna helicase [Nannochloropsis gaditana CC... [more]
XP_008867979.11.500e-14762.10hypothetical protein H310_05119 [Aphanomyces invad... [more]
XP_009837866.19.700e-14761.87hypothetical protein H257_12387 [Aphanomyces astac... [more]
XP_008611814.12.800e-14661.14hypothetical protein SDRG_07740 [Saprolegnia dicli... [more]
XP_008906493.11.400e-14560.91hypothetical protein PPTG_12047 [Phytophthora para... [more]
XP_002908093.11.400e-14560.91DEAD/DEAH box RNA helicase, putative [Phytophthora... [more]
KUF93881.11.400e-14560.91Gag-Pol polyprotein [Phytophthora nicotianae][more]
OQR85422.13.400e-14460.45DEAD/DEAH box RNA helicase [Achlya hypogyna][more]
XP_009525994.11.300e-14360.82hypothetical protein PHYSODRAFT_300186 [Phytophtho... [more]
XP_024580211.11.700e-14360.45dead box rna helicase [Plasmopara halstedii] >CEG4... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004026NSK004026Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01760.1NO18G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604305gene_8862Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100472g7gene7074Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01760.1NO18G01760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01760 ID=NO18G01760|Name=NO18G01760|organism=Nannochloropsis oceanica|type=gene|length=2558bp
ATGGGCGGGAGCAAGGACAAGAAGCGCAAGGTTGTGGATGAGgtaggcgc
tgggctgggagtgaatgggcatgggagtatctaagaagcagcagaagcgt
cgccctcctagtgtggttttgtgtgattgtggctggccatgcctgtaagg
ttccgatgctatatttaccgcacgatatccttacttccctggtgaatgtc
tgatcacgagttgtgtttgtggggtgaccgcccttcttcccaatccaggt
actcacgatgtcgcggcgtttcccaactcctccatatacctgtattttgt
gtatttatctcaactctttcatgttaccttgcacaatacgcttccatttc
tctccattcacccatccccccgggacccggcccacccacacatctcatca
aaatagGAGGAAGCCATGACAACTTCGACATGTGCGGCTGCAACTTACGA
GGCCGCGAAGAACAAGCGCGAGGCTTCTGAGAACGGTCACCGTCACCAGG
AAGAGGATATTCACTCACTAGCAGTTGAAGAGGACGAGGACGAGGACAAG
GACAAGGACGAGGACAAGGACGAGGACGAGGACAAGGACGAGGACGCAGC
GGCGGCGGCAGCAGCAGCAGCAGTTGAGAAGAAAGCACGCAAGAAGGCCA
AGAAAGAAGCGAAGCGCCTGGCCAAACTAGAAGGGGCTGATGTTGGCGGT
GATGCGACTGCTACTGATGAAGAAAAGAAAGCGGAAAAGGAAGAGGAAGT
GGGCAAGGAAGAGAAGAAACGCCGGAAAAAGGAAAAAAAACGTCAAGAGA
AAGAAACCTCGTCCTCCTCCGTCCCCTCGACCCCTTCCTCGTCCTGCACC
TCCTCTTCGGACATCATGTCCCAGTCAAAAGCTCAAACTTGGTGGGAGAA
GAACGAGATCCTGGTCTCTGGCCCTGGATGCGAGCTCTTCCTCCCCACCC
TCACCTTTTCCGGCGCCAACTTCCCCGCAGATCTTTTGGCCTGTACTAAG
GGCTTCAAGGCCCCCACACCTATTCAAGCGCAGTGCTGGCCGGTGTTGAT
GGCAGGTAGGGACATCATTGGGATTGCTGAAACGGGCTCGGGGAAGACGT
TGACGTTTGCTTTGCCTGGCTTGGTACATATCAGGGGAAAGGTGAAGGAG
GGAGGGGGGAAGGGAGGGCGGCAGCGGCGTGTGCCGCGGATGTTGGTGGT
GGCCCCAACGAGGGAATTGGCGATGCAGAGCGCGGAGGTACTGGATGGGG
TGTTGAATGGGCTGGACCTGAGGAGCATATGTTTGTTTGGAGGGGTGAAC
AAGCATGAGCAACGGCAGGCGTTGCGACAGGGGGTGGACATCGTGGTGGC
CACGCCAGGACGGCTTGCGGACCTGATGGAGGAAGGCGAGTGCGACTTGA
GCGAGGTATCGTACCTTGTCCTGGATGAGGCGGATAGGATGCTGGACCAG
GGCTTCGAGCAGGCCATTCGGGGCATCATTTTAGAGTGTGCACCGGCGGA
TAAGAGGCAAACGGCCTTGTTCTCCGCGACCTGGCCGCAGTCGATCCAGA
CTTTGGCGAGGGAATTTCTGAGGGAGCCGGTGAAGGTGACGATTGGAGGA
GAGGATTTGAGTAGCAACAAGAGGGTGAAGCAGGTGGTGGAGGTGCTGGG
GGAGTTTGACCGCGAGAAGCGTTTACGGGCTCTTCTGCAGCAGTATCATG
GAAAGAGGGATAACAGGGTGCTGATCTTTGCGCTTTATAAGAAGgtacgt
gccgacccgtgatattgggctattacgtgttggggtgtgggtgtgggtgt
ggatgcgggtgtgcgtacactgctattcatctttccccacccctatatct
gtccccatccctccctctcttgctcatcccgtcggctctcgttcctccgc
tgccttccctccctctccctctttccctctctcagGAAGCAGGCCGGCTG
GAGCAGAATCTGCAACGGCAAGGATTCAATTGCCTGGGTATCCACGGGGA
CAAGGGTCAGAACGATCGCATCGCGGCCATTGAGAAGTTCAAGACGAAGG
AAGTGCCGCTTCTGATTGCGACTGACGTGGCGGCCCGGGGGCTGGATATC
CCGGATGTGGAGGTGGTGATTAATTATTCGTTTCCTTTGACGATTGAGGA
CTATGTACACAGgtactggaggagagggggagaaaagcaagcaaggaagg
gaggaagggaggaagggaggaaggaaggaaggaagggagagacagaaagg
gaaacactaatcgctccccttccctccctccttccctccttcccttcctc
gcttcctccagGATTGGTCGTACCGGCCGTGCCGGCAAGACGGGTATCGC
GCACACCTTCTTTCACCAAGGCGACAAGGGGAATGCCGGCGCGCTCGTCA
ACACATTGAATCAGGCGGGGCAGGAGGTGCCTGCGGATTTGATGAAGTTC
GGCACGGCGGTAAAGAAGAAGGAGCACAAGCTATATGGGGCGTTCGGACC
CAAGGATGGGATGGAGGTGAAAAAGGCGACCAAGATTGTGTTCGGGGATG
ATGACTAA
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protein sequence of NO18G01760.1

>NO18G01760.1-protein ID=NO18G01760.1-protein|Name=NO18G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=618bp
MGGSKDKKRKVVDEEEAMTTSTCAAATYEAAKNKREASENGHRHQEEDIH
SLAVEEDEDEDKDKDEDKDEDEDKDEDAAAAAAAAAVEKKARKKAKKEAK
RLAKLEGADVGGDATATDEEKKAEKEEEVGKEEKKRRKKEKKRQEKETSS
SSVPSTPSSSCTSSSDIMSQSKAQTWWEKNEILVSGPGCELFLPTLTFSG
ANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFAL
PGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGL
DLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSY
LVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLARE
FLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDN
RVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEV
PLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAH
TFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPK
DGMEVKKATKIVFGDDD*
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Synonyms
Publications