NO18G01760.1, NO18G01760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01760.1
Unique NameNO18G01760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1854
Alignment locationchr18:552215..554772 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:552215..554772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01760.1 vs.
Match: XP_005853396.1 (dead box rna helicase [Nannochloropsis gaditana CCMP526]; EKU22967.1 dead box rna helicase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 685.6 bits (1768), Expect = 1.400e-193
Identity = 405/634 (63.88%), Postives = 460/634 (72.56%), Query Frame = 0 
Query:    1 MGGSKDK--KRKVVDEEEAMTTSTCAAATYEAAKNKREASENGHRHQEEDIHSLAVEEDEDEDKDKDEDKDEDEDKDEDAAAAAAAAAVEKKARKKAKKEAKRLAKL--------------EGADVGGDATATDEEKKAEKEEEVGKEEKKRRKKEKKRQEKETSSSS-VPSTPSSSCTSSSDI-MSQSKAQTWWEKNEILVSGPGCELFLPTLTFSGANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFALPGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGLDLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSYLVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLAREFLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDNRVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEVPLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAHTFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPKDGMEVKKATKIVFGDD 617
            MGGS+DK  KRK+  E+   TT     +  +A+K K +      + +++D  S        E  D    KDE   K+E+  A       E+K RKKAKKE+KR A+L              E AD   + T  +++ +      + KEE+KR KKEKK+QEK  +++S     PS+ CT+ +   +S+S+AQ WWE+NEILVSGPGC+ FLPTL+F+G  FP DLL CT+GF  PTPIQAQCWPVLM GRDIIGIAETGSGKTLTF LPGL  IR   K G   GGR   VPRMLVVAPTRELAMQSAEV+DGV+ G  LRSICLFGGV K EQRQALR GVDI+VATPGRLADLMEEGECDLS VSYLVLDEADRMLDQGFEQAIRGI+  C P  +RQTALFSATWP +IQ LA EFL  PVKVTIGGEDLSSNKRV+QVVEV+GEF+RE RLR LL QYHG+RDNRVL+FALYKK                      + +        KFKTKEVPLL+ATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGK GIAHTFFHQGDKGNAGALVNTL QAGQEVP  L+KFGTAVKKKEHKLYGAFGP++GME KKATKIVF DD
Sbjct:    1 MGGSEDKRKKRKLAKEQ---TTEALDRSDPKASKKKCK------KKKKQDAASSCPSARPSEVSDPIMGKDELSMKEEEKEAR------ERKLRKKAKKESKRAAELLKISEAETAETEVKEPADKLLNGTTNEKQDEQSSISRLSKEERKRAKKEKKKQEKIAAATSHATPLPSTPCTADAPHPLSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFILPGLERIR---KAGAPDGGRAGHVPRMLVVAPTRELAMQSAEVIDGVVEGSGLRSICLFGGVPKQEQRQALRGGVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKK-----------------AFMETRARATASPPSTKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKKGIAHTFFHQGDKGNAGALVNTLRQAGQEVPPALLKFGTAVKKKEHKLYGAFGPREGMEEKKATKIVFADD 599
The following BLAST results are available for this feature:
BLAST of NO18G01760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853396.11.400e-19363.88dead box rna helicase [Nannochloropsis gaditana CC... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01760NO18G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01760.1NO18G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01760.1.cds1NO18G01760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01760.1.cds2NO18G01760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01760.1.cds3NO18G01760.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01760.1.cds4NO18G01760.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01760.1 ID=NO18G01760.1|Name=NO18G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp
ATGGGCGGGAGCAAGGACAAGAAGCGCAAGGTTGTGGATGAGGAGGAAGC
CATGACAACTTCGACATGTGCGGCTGCAACTTACGAGGCCGCGAAGAACA
AGCGCGAGGCTTCTGAGAACGGTCACCGTCACCAGGAAGAGGATATTCAC
TCACTAGCAGTTGAAGAGGACGAGGACGAGGACAAGGACAAGGACGAGGA
CAAGGACGAGGACGAGGACAAGGACGAGGACGCAGCGGCGGCGGCAGCAG
CAGCAGCAGTTGAGAAGAAAGCACGCAAGAAGGCCAAGAAAGAAGCGAAG
CGCCTGGCCAAACTAGAAGGGGCTGATGTTGGCGGTGATGCGACTGCTAC
TGATGAAGAAAAGAAAGCGGAAAAGGAAGAGGAAGTGGGCAAGGAAGAGA
AGAAACGCCGGAAAAAGGAAAAAAAACGTCAAGAGAAAGAAACCTCGTCC
TCCTCCGTCCCCTCGACCCCTTCCTCGTCCTGCACCTCCTCTTCGGACAT
CATGTCCCAGTCAAAAGCTCAAACTTGGTGGGAGAAGAACGAGATCCTGG
TCTCTGGCCCTGGATGCGAGCTCTTCCTCCCCACCCTCACCTTTTCCGGC
GCCAACTTCCCCGCAGATCTTTTGGCCTGTACTAAGGGCTTCAAGGCCCC
CACACCTATTCAAGCGCAGTGCTGGCCGGTGTTGATGGCAGGTAGGGACA
TCATTGGGATTGCTGAAACGGGCTCGGGGAAGACGTTGACGTTTGCTTTG
CCTGGCTTGGTACATATCAGGGGAAAGGTGAAGGAGGGAGGGGGGAAGGG
AGGGCGGCAGCGGCGTGTGCCGCGGATGTTGGTGGTGGCCCCAACGAGGG
AATTGGCGATGCAGAGCGCGGAGGTACTGGATGGGGTGTTGAATGGGCTG
GACCTGAGGAGCATATGTTTGTTTGGAGGGGTGAACAAGCATGAGCAACG
GCAGGCGTTGCGACAGGGGGTGGACATCGTGGTGGCCACGCCAGGACGGC
TTGCGGACCTGATGGAGGAAGGCGAGTGCGACTTGAGCGAGGTATCGTAC
CTTGTCCTGGATGAGGCGGATAGGATGCTGGACCAGGGCTTCGAGCAGGC
CATTCGGGGCATCATTTTAGAGTGTGCACCGGCGGATAAGAGGCAAACGG
CCTTGTTCTCCGCGACCTGGCCGCAGTCGATCCAGACTTTGGCGAGGGAA
TTTCTGAGGGAGCCGGTGAAGGTGACGATTGGAGGAGAGGATTTGAGTAG
CAACAAGAGGGTGAAGCAGGTGGTGGAGGTGCTGGGGGAGTTTGACCGCG
AGAAGCGTTTACGGGCTCTTCTGCAGCAGTATCATGGAAAGAGGGATAAC
AGGGTGCTGATCTTTGCGCTTTATAAGAAGGAAGCAGGCCGGCTGGAGCA
GAATCTGCAACGGCAAGGATTCAATTGCCTGGGTATCCACGGGGACAAGG
GTCAGAACGATCGCATCGCGGCCATTGAGAAGTTCAAGACGAAGGAAGTG
CCGCTTCTGATTGCGACTGACGTGGCGGCCCGGGGGCTGGATATCCCGGA
TGTGGAGGTGGTGATTAATTATTCGTTTCCTTTGACGATTGAGGACTATG
TACACAGGATTGGTCGTACCGGCCGTGCCGGCAAGACGGGTATCGCGCAC
ACCTTCTTTCACCAAGGCGACAAGGGGAATGCCGGCGCGCTCGTCAACAC
ATTGAATCAGGCGGGGCAGGAGGTGCCTGCGGATTTGATGAAGTTCGGCA
CGGCGGTAAAGAAGAAGGAGCACAAGCTATATGGGGCGTTCGGACCCAAG
GATGGGATGGAGGTGAAAAAGGCGACCAAGATTGTGTTCGGGGATGATGA
CTAA
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protein sequence of NO18G01760.1

>NO18G01760.1-protein ID=NO18G01760.1-protein|Name=NO18G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=618bp
MGGSKDKKRKVVDEEEAMTTSTCAAATYEAAKNKREASENGHRHQEEDIH
SLAVEEDEDEDKDKDEDKDEDEDKDEDAAAAAAAAAVEKKARKKAKKEAK
RLAKLEGADVGGDATATDEEKKAEKEEEVGKEEKKRRKKEKKRQEKETSS
SSVPSTPSSSCTSSSDIMSQSKAQTWWEKNEILVSGPGCELFLPTLTFSG
ANFPADLLACTKGFKAPTPIQAQCWPVLMAGRDIIGIAETGSGKTLTFAL
PGLVHIRGKVKEGGGKGGRQRRVPRMLVVAPTRELAMQSAEVLDGVLNGL
DLRSICLFGGVNKHEQRQALRQGVDIVVATPGRLADLMEEGECDLSEVSY
LVLDEADRMLDQGFEQAIRGIILECAPADKRQTALFSATWPQSIQTLARE
FLREPVKVTIGGEDLSSNKRVKQVVEVLGEFDREKRLRALLQQYHGKRDN
RVLIFALYKKEAGRLEQNLQRQGFNCLGIHGDKGQNDRIAAIEKFKTKEV
PLLIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKTGIAH
TFFHQGDKGNAGALVNTLNQAGQEVPADLMKFGTAVKKKEHKLYGAFGPK
DGMEVKKATKIVFGDDD*
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mRNA from alignment at chr18:552215..554772+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01760.1 ID=NO18G01760.1|Name=NO18G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2558bp|location=Sequence derived from alignment at chr18:552215..554772+ (Nannochloropsis oceanica)
ATGGGCGGGAGCAAGGACAAGAAGCGCAAGGTTGTGGATGAGGTAGGCGC
TGGGCTGGGAGTGAATGGGCATGGGAGTATCTAAGAAGCAGCAGAAGCGT
CGCCCTCCTAGTGTGGTTTTGTGTGATTGTGGCTGGCCATGCCTGTAAGG
TTCCGATGCTATATTTACCGCACGATATCCTTACTTCCCTGGTGAATGTC
TGATCACGAGTTGTGTTTGTGGGGTGACCGCCCTTCTTCCCAATCCAGGT
ACTCACGATGTCGCGGCGTTTCCCAACTCCTCCATATACCTGTATTTTGT
GTATTTATCTCAACTCTTTCATGTTACCTTGCACAATACGCTTCCATTTC
TCTCCATTCACCCATCCCCCCGGGACCCGGCCCACCCACACATCTCATCA
AAATAGGAGGAAGCCATGACAACTTCGACATGTGCGGCTGCAACTTACGA
GGCCGCGAAGAACAAGCGCGAGGCTTCTGAGAACGGTCACCGTCACCAGG
AAGAGGATATTCACTCACTAGCAGTTGAAGAGGACGAGGACGAGGACAAG
GACAAGGACGAGGACAAGGACGAGGACGAGGACAAGGACGAGGACGCAGC
GGCGGCGGCAGCAGCAGCAGCAGTTGAGAAGAAAGCACGCAAGAAGGCCA
AGAAAGAAGCGAAGCGCCTGGCCAAACTAGAAGGGGCTGATGTTGGCGGT
GATGCGACTGCTACTGATGAAGAAAAGAAAGCGGAAAAGGAAGAGGAAGT
GGGCAAGGAAGAGAAGAAACGCCGGAAAAAGGAAAAAAAACGTCAAGAGA
AAGAAACCTCGTCCTCCTCCGTCCCCTCGACCCCTTCCTCGTCCTGCACC
TCCTCTTCGGACATCATGTCCCAGTCAAAAGCTCAAACTTGGTGGGAGAA
GAACGAGATCCTGGTCTCTGGCCCTGGATGCGAGCTCTTCCTCCCCACCC
TCACCTTTTCCGGCGCCAACTTCCCCGCAGATCTTTTGGCCTGTACTAAG
GGCTTCAAGGCCCCCACACCTATTCAAGCGCAGTGCTGGCCGGTGTTGAT
GGCAGGTAGGGACATCATTGGGATTGCTGAAACGGGCTCGGGGAAGACGT
TGACGTTTGCTTTGCCTGGCTTGGTACATATCAGGGGAAAGGTGAAGGAG
GGAGGGGGGAAGGGAGGGCGGCAGCGGCGTGTGCCGCGGATGTTGGTGGT
GGCCCCAACGAGGGAATTGGCGATGCAGAGCGCGGAGGTACTGGATGGGG
TGTTGAATGGGCTGGACCTGAGGAGCATATGTTTGTTTGGAGGGGTGAAC
AAGCATGAGCAACGGCAGGCGTTGCGACAGGGGGTGGACATCGTGGTGGC
CACGCCAGGACGGCTTGCGGACCTGATGGAGGAAGGCGAGTGCGACTTGA
GCGAGGTATCGTACCTTGTCCTGGATGAGGCGGATAGGATGCTGGACCAG
GGCTTCGAGCAGGCCATTCGGGGCATCATTTTAGAGTGTGCACCGGCGGA
TAAGAGGCAAACGGCCTTGTTCTCCGCGACCTGGCCGCAGTCGATCCAGA
CTTTGGCGAGGGAATTTCTGAGGGAGCCGGTGAAGGTGACGATTGGAGGA
GAGGATTTGAGTAGCAACAAGAGGGTGAAGCAGGTGGTGGAGGTGCTGGG
GGAGTTTGACCGCGAGAAGCGTTTACGGGCTCTTCTGCAGCAGTATCATG
GAAAGAGGGATAACAGGGTGCTGATCTTTGCGCTTTATAAGAAGGTACGT
GCCGACCCGTGATATTGGGCTATTACGTGTTGGGGTGTGGGTGTGGGTGT
GGATGCGGGTGTGCGTACACTGCTATTCATCTTTCCCCACCCCTATATCT
GTCCCCATCCCTCCCTCTCTTGCTCATCCCGTCGGCTCTCGTTCCTCCGC
TGCCTTCCCTCCCTCTCCCTCTTTCCCTCTCTCAGGAAGCAGGCCGGCTG
GAGCAGAATCTGCAACGGCAAGGATTCAATTGCCTGGGTATCCACGGGGA
CAAGGGTCAGAACGATCGCATCGCGGCCATTGAGAAGTTCAAGACGAAGG
AAGTGCCGCTTCTGATTGCGACTGACGTGGCGGCCCGGGGGCTGGATATC
CCGGATGTGGAGGTGGTGATTAATTATTCGTTTCCTTTGACGATTGAGGA
CTATGTACACAGGTACTGGAGGAGAGGGGGAGAAAAGCAAGCAAGGAAGG
GAGGAAGGGAGGAAGGGAGGAAGGAAGGAAGGAAGGGAGAGACAGAAAGG
GAAACACTAATCGCTCCCCTTCCCTCCCTCCTTCCCTCCTTCCCTTCCTC
GCTTCCTCCAGGATTGGTCGTACCGGCCGTGCCGGCAAGACGGGTATCGC
GCACACCTTCTTTCACCAAGGCGACAAGGGGAATGCCGGCGCGCTCGTCA
ACACATTGAATCAGGCGGGGCAGGAGGTGCCTGCGGATTTGATGAAGTTC
GGCACGGCGGTAAAGAAGAAGGAGCACAAGCTATATGGGGCGTTCGGACC
CAAGGATGGGATGGAGGTGAAAAAGGCGACCAAGATTGTGTTCGGGGATG
ATGACTAA
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Coding sequence (CDS) from alignment at chr18:552215..554772+

>NO18G01760.1 ID=NO18G01760.1|Name=NO18G01760.1|organism=Nannochloropsis oceanica|type=CDS|length=1854bp|location=Sequence derived from alignment at chr18:552215..554772+ (Nannochloropsis oceanica)
ATGGGCGGGAGCAAGGACAAGAAGCGCAAGGTTGTGGATGAGGAGGAAGC
CATGACAACTTCGACATGTGCGGCTGCAACTTACGAGGCCGCGAAGAACA
AGCGCGAGGCTTCTGAGAACGGTCACCGTCACCAGGAAGAGGATATTCAC
TCACTAGCAGTTGAAGAGGACGAGGACGAGGACAAGGACAAGGACGAGGA
CAAGGACGAGGACGAGGACAAGGACGAGGACGCAGCGGCGGCGGCAGCAG
CAGCAGCAGTTGAGAAGAAAGCACGCAAGAAGGCCAAGAAAGAAGCGAAG
CGCCTGGCCAAACTAGAAGGGGCTGATGTTGGCGGTGATGCGACTGCTAC
TGATGAAGAAAAGAAAGCGGAAAAGGAAGAGGAAGTGGGCAAGGAAGAGA
AGAAACGCCGGAAAAAGGAAAAAAAACGTCAAGAGAAAGAAACCTCGTCC
TCCTCCGTCCCCTCGACCCCTTCCTCGTCCTGCACCTCCTCTTCGGACAT
CATGTCCCAGTCAAAAGCTCAAACTTGGTGGGAGAAGAACGAGATCCTGG
TCTCTGGCCCTGGATGCGAGCTCTTCCTCCCCACCCTCACCTTTTCCGGC
GCCAACTTCCCCGCAGATCTTTTGGCCTGTACTAAGGGCTTCAAGGCCCC
CACACCTATTCAAGCGCAGTGCTGGCCGGTGTTGATGGCAGGTAGGGACA
TCATTGGGATTGCTGAAACGGGCTCGGGGAAGACGTTGACGTTTGCTTTG
CCTGGCTTGGTACATATCAGGGGAAAGGTGAAGGAGGGAGGGGGGAAGGG
AGGGCGGCAGCGGCGTGTGCCGCGGATGTTGGTGGTGGCCCCAACGAGGG
AATTGGCGATGCAGAGCGCGGAGGTACTGGATGGGGTGTTGAATGGGCTG
GACCTGAGGAGCATATGTTTGTTTGGAGGGGTGAACAAGCATGAGCAACG
GCAGGCGTTGCGACAGGGGGTGGACATCGTGGTGGCCACGCCAGGACGGC
TTGCGGACCTGATGGAGGAAGGCGAGTGCGACTTGAGCGAGGTATCGTAC
CTTGTCCTGGATGAGGCGGATAGGATGCTGGACCAGGGCTTCGAGCAGGC
CATTCGGGGCATCATTTTAGAGTGTGCACCGGCGGATAAGAGGCAAACGG
CCTTGTTCTCCGCGACCTGGCCGCAGTCGATCCAGACTTTGGCGAGGGAA
TTTCTGAGGGAGCCGGTGAAGGTGACGATTGGAGGAGAGGATTTGAGTAG
CAACAAGAGGGTGAAGCAGGTGGTGGAGGTGCTGGGGGAGTTTGACCGCG
AGAAGCGTTTACGGGCTCTTCTGCAGCAGTATCATGGAAAGAGGGATAAC
AGGGTGCTGATCTTTGCGCTTTATAAGAAGGAAGCAGGCCGGCTGGAGCA
GAATCTGCAACGGCAAGGATTCAATTGCCTGGGTATCCACGGGGACAAGG
GTCAGAACGATCGCATCGCGGCCATTGAGAAGTTCAAGACGAAGGAAGTG
CCGCTTCTGATTGCGACTGACGTGGCGGCCCGGGGGCTGGATATCCCGGA
TGTGGAGGTGGTGATTAATTATTCGTTTCCTTTGACGATTGAGGACTATG
TACACAGGATTGGTCGTACCGGCCGTGCCGGCAAGACGGGTATCGCGCAC
ACCTTCTTTCACCAAGGCGACAAGGGGAATGCCGGCGCGCTCGTCAACAC
ATTGAATCAGGCGGGGCAGGAGGTGCCTGCGGATTTGATGAAGTTCGGCA
CGGCGGTAAAGAAGAAGGAGCACAAGCTATATGGGGCGTTCGGACCCAAG
GATGGGATGGAGGTGAAAAAGGCGACCAAGATTGTGTTCGGGGATGATGA
CTAA
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Synonyms
Publications