NO18G01660, NO18G01660 (gene) Nannochloropsis oceanica

Overview
NameNO18G01660
Unique NameNO18G01660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1298
Alignment locationchr18:531545..532842 +

Link to JBrowse

Properties
Property NameValue
DescriptionDna-directed rna polymerase i and iii subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:531545..532842 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0016740transferase activity
GO:0005515protein binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR036643RNApol_insert_sf
IPR033901RNAPI/II_AC40
IPR011262DNA-dir_RNA_pol_insert
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
Homology
[Close]
BLAST of NO18G01660 vs. NCBI_GenBank
Match: XP_009833586.1 (hypothetical protein H257_09157 [Aphanomyces astaci] >ETV76674.1 hypothetical protein H257_09157 [Aphanomyces astaci])

HSP 1 Score: 303.9 bits (777), Expect = 6.500e-79
Identity = 159/314 (50.64%), Postives = 204/314 (64.97%), Query Frame = 0 
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAI 339
            E +   V++ +++ ++ I  L  E+++FDL+G DAS+ANA RRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGLIP+  DP +F+  P     EAT+ NTLVF +D++                     A   SV+S  L W P G Q        P  V  DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRLLP +    P+ G +A+ L K CPMNVFDIEDL         AV  RPR+CTMCRECIR     +KVKL RV+DHFIFS+E+VG L PE +L +A+ VL  KC V +E++
Sbjct:   21 ESSHAFVDNFKKHFKVKIQSLSDEDIVFDLVGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSFPEHEEGEATDENTLVFKLDVT--------CTADPNDPADISKATNASVYSRHLEWVPQGLQEERFGSIRP--VSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEISFPAPVVGADAKTLQKTCPMNVFDIEDLA--------AVAARPRNCTMCRECIRAPGWSDKVKLGRVSDHFIFSVETVGMLRPEDLLPEAIKVLVAKCDVAVESL 316
[Close]
BLAST of NO18G01660 vs. NCBI_GenBank
Match: XP_008872071.1 (hypothetical protein H310_08187 [Aphanomyces invadans] >ETV99515.1 hypothetical protein H310_08187 [Aphanomyces invadans])

HSP 1 Score: 303.9 bits (777), Expect = 6.500e-79
Identity = 160/314 (50.96%), Postives = 204/314 (64.97%), Query Frame = 0 
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAI 339
            E +   V++ ++ L++ I  L  +E++FDLIG DAS+ANA RRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGLIP+  DP +F+  P     EAT+ NTLVF +D++                     A   SV+S  L W P G Q        P  V  DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRLLP +    P+ G +A+ L K CPMNVFDIEDL         AV  RPR+CTMCRECIR     +KVK+ RV+DHFIFS+E+VG L PE +L +A+ VL  KC V +E++
Sbjct:   21 ESSHAFVDNFKKQLKVKIQSLTDDEIVFDLIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSFPEHEEGEATDENTLVFKLDVT--------CTADPSDPNDISKATNASVYSRHLEWVPQGLQEERFGSIRP--VSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEITFPAPVVGADAKTLQKTCPMNVFDIEDLA--------AVAARPRNCTMCRECIRAPGWSDKVKMGRVSDHFIFSVETVGMLPPEDLLPEAIKVLVAKCDVAVESL 316
[Close]
BLAST of NO18G01660 vs. NCBI_GenBank
Match: POM57850.1 (DNA-directed RNA polymerase I and III subunit RPAC1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 303.9 bits (777), Expect = 6.500e-79
Identity = 158/316 (50.00%), Postives = 208/316 (65.82%), Query Frame = 0 
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAIEK 341
            E + + VE  +  ++I I  L  +E++FDLIG DA++ANALRRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGL+P+  DP +F+  P    +EAT+ NT+VF +D++ +                   A   SV+S  L W P G Q        P  VH DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRL+P+VE  E + G +A+ LV+ C + +FDIED+    GG   AVV   R CTMCR CIRE    EK++L R +DHFIFS+ESVG + PE +L +A+NVL  KC V LE+  +
Sbjct:   23 ESSYSFVEQSKRQVKIKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAFPDNEEAEATDENTIVFKLDVTCK--------YDPEHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGSIRP--VHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVEFTEKVEGADAKRLVEECQIGLFDIEDI----GGVPTAVVKDERSCTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLGEKCNVALESFSQ 324
[Close]
BLAST of NO18G01660 vs. NCBI_GenBank
Match: OWZ09120.1 (DNA-directed RNA polymerase I and III subunit RPAC1 [Phytophthora megakarya])

HSP 1 Score: 303.5 bits (776), Expect = 8.500e-79
Identity = 159/313 (50.80%), Postives = 206/313 (65.81%), Query Frame = 0 
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEA 338
            E + + VE  +  +++ I  L  +E++FDLIG DA++ANALRRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGL+P+  DP +F+  P    +EAT+ NT+VF +DI+ +                   A   SV+S  L W P G Q        P  VH DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRL+P+VE  E + G EA+ LV  C + +FDIED+     G   AVV   R CTMCR CIRE    EK++L RV+DHFIFS+ESVG + PE +L +A+NVL  KC V LE+
Sbjct:   23 ESSYSFVEQSKRQVKVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAFPDDEEAEATDENTIVFKLDITCK--------YDPDHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGSIRP--VHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVEFTEKVEGAEAKRLVDECQIGLFDIEDI----SGVPTAVVKDERSCTMCRNCIREPGWNEKIRLGRVSDHFIFSVESVGMIKPEELLLEALNVLGEKCNVALES 321
[Close]
BLAST of NO18G01660 vs. NCBI_GenBank
Match: POM64249.1 (DNA-directed RNA polymerase I and III subunit RPAC1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 303.5 bits (776), Expect = 8.500e-79
Identity = 158/316 (50.00%), Postives = 208/316 (65.82%), Query Frame = 0 
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAIEK 341
            E + + VE  +  ++I I  L  +E++FDLIG DA++ANALRRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGL+P+  DP +F+  P    +EAT+ NT+VF +D++ +                   A   SV+S  L W P G Q        P  VH DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRL+P+VE  E + G +A+ LV+ C + +FDIED+    GG   AVV   R CTMCR CIRE    EK++L R +DHFIFS+ESVG + PE +L +A+NVL  KC V LE+  +
Sbjct:   23 ESSYSFVEQSKRQVKIKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQPFPDNEEAEATDENTIVFKLDVTCK--------YDPEHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGSIRP--VHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVEFTEKVEGADAKRLVEECQIGLFDIEDI----GGVPTAVVKDERSCTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLGEKCNVALESFSQ 324
[Close]
BLAST of NO18G01660 vs. NCBI_GenBank
Match: XP_002896890.1 (DNA-directed RNA polymerase I and III subunit RPAC1, putative [Phytophthora infestans T30-4] >EEY66589.1 DNA-directed RNA polymerase I and III subunit RPAC1, putative [Phytophthora infestans T30-4])

HSP 1 Score: 302.8 bits (774), Expect = 1.400e-78
Identity = 159/313 (50.80%), Postives = 208/313 (66.45%), Query Frame = 0 
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDIS--FQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLL 336
            E + + VE  +  +++ I  L  +E++FDLIG DA++ANALRRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGLIP+  DP +F+  P    +EAT+ NT+VF +D++  F P                  A   SV+S  L W P G Q        P  VH DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRL+P+VE++E + G +A+ LV+ C + +FDIED+    GG   AVV   R CTMCR CIRE    EK++L R +DHFIFS+ESVG + PE +L +A+NVL  KC V L
Sbjct:   19 ESSYSFVEQSKRQVKVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLNVDPREFQAFPDNEEAEATDENTIVFKLDVTCKFDP----------EHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGSIRP--VHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEECQIGLFDIEDI----GGVPTAVVKDQRACTMCRNCIREPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKCNVAL 315
[Close]
BLAST of NO18G01660 vs. NCBI_GenBank
Match: XP_002997258.1 (DNA-directed RNA polymerase I and III subunit RPAC1, putative [Phytophthora infestans T30-4] >EEY69491.1 DNA-directed RNA polymerase I and III subunit RPAC1, putative [Phytophthora infestans T30-4])

HSP 1 Score: 302.4 bits (773), Expect = 1.900e-78
Identity = 159/313 (50.80%), Postives = 208/313 (66.45%), Query Frame = 0 
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDIS--FQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLL 336
            E + + VE  +  +++ I  L  +E++FDLIG DA++ANALRRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGLIP+  DP +F+  P    +EAT+ NT+VF +D++  F P                  A   SV+S  L W P G Q        P  VH DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRL+P+VE++E + G +A+ LV+ C + +FDIED+    GG   AVV   R CTMCR CIRE    EK++L R +DHFIFS+ESVG + PE +L +A+NVL  KC V L
Sbjct:   23 ESSYSFVEQSKRQVKVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLNVDPREFQAFPDNEEAEATDENTIVFKLDVTCKFDP----------EHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGSIRP--VHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEECHIGLFDIEDI----GGVPTAVVKDQRACTMCRNCIREPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKCNVAL 319
[Close]
BLAST of NO18G01660 vs. NCBI_GenBank
Match: CCI47619.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 297.7 bits (761), Expect = 4.700e-77
Identity = 158/309 (51.13%), Postives = 204/309 (66.02%), Query Frame = 0 
Query:   34 LRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVK-LCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAIEKE 342
            L++ ++I I  LD +EM FDLIG D S+ANALRRILL+E+PTMAIE V+++ NSSI+ DEVLAHRLGLIP+  DP +F++ P    +EAT+ NT+VF +D++ +               +   A   SV+S  L W P G Q        P  V  DIL+AKL+PGQ I +E  CRK +GKDHAK+SPVSTASYRLLP VE +EP+TG EA  LV+  C   VFDIED+ G       AVV+ PR CTMCRECIR     +K++L R  DHFIFS+ES G   P+ +L +A+ VL  KCT+ LE+ +KE
Sbjct:   32 LKQQIQIQIKHLDDQEMEFDLIGVDPSIANALRRILLSEIPTMAIEQVYIWNNSSIIQDEVLAHRLGLIPLLVDPREFQHFPDDEEAEATDENTIVFKLDVTCR--------SDPNHPENPSKAFHSSVYSRDLEWVPQGNQEERFTSIRP--VSEDILIAKLRPGQSIALEAHCRKSIGKDHAKFSPVSTASYRLLPCVEFMEPVTGAEATELVQNKCVSKVFDIEDIAGL----PTAVVSDPRRCTMCRECIRAPGWDKKIRLGRQHDHFIFSVESAGMFQPQELLSEALTVLMGKCTMALESFQKE 326
[Close]
BLAST of NO18G01660 vs. NCBI_GenBank
Match: GAY02770.1 (DNA-directed RNA polymerase I and III subunit RPAC1, putative [Pythium insidiosum])

HSP 1 Score: 296.6 bits (758), Expect = 1.000e-76
Identity = 159/319 (49.84%), Postives = 211/319 (66.14%), Query Frame = 0 
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDIS--FQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKL-CPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAIEK 341
            E +   VE L++ +++ I  L  +E++FDLIG DAS+ANALRRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGL+P+  DP +F+  P    +EAT+ NT+VF +D++  F P               A+N+   S++S  L W P G Q        P  V  +IL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRLLP +E   P+TG  A+ LV+  C M+VFDIED+    GG   AVV   R CTMCR CIR+    E+++L R  DHFIFS+ESVG + PE +L +A+NVL  KC + LE+  +
Sbjct:  314 EASHDFVEQLKKQVKVKIQSLTDDEIVFDLIGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAFPDHEEAEATDENTIVFKLDVTCKFDP-------EFPNDPSKAINS---SIYSRHLEWVPQGNQEERFGSIRP--VDENILIAKLRPGQXIALEAHCRKGVGKDHAKFSPVATASYRLLPHIEFKTPVTGPLAKKLVEQNCAMDVFDIEDI----GGVATAVVKDARACTMCRNCIRDPEWDERIQLGRKNDHFIFSVESVGMIKPEELLPEALNVLVEKCNIALESFNE 616
[Close]
BLAST of NO18G01660 vs. NCBI_GenBank
Match: XP_024581379.1 (dna-directed rna polymerase i and iii subunit [Plasmopara halstedii] >CEG45010.1 dna-directed rna polymerase i and iii subunit [Plasmopara halstedii])

HSP 1 Score: 295.0 bits (754), Expect = 3.000e-76
Identity = 154/309 (49.84%), Postives = 207/309 (66.99%), Query Frame = 0 
Query:   31 VEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDIS--FQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEA 338
            V+  +  ++I + +L  + +IFDLIG DA++ANALRRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGL+P+  DP +F+       +EAT+ NT+VF +D++  F P                  A   SV+S  L W P G Q        P  VH DIL+AKL+PGQ + +E  CRKG+GKDHAK+SPV+TASYRL+P+VE+ E I G +A  L++ CP+N+FDIED+    GG +  VV   R CTMCR CIRE    +K++L R ADHFIFSIESVG + PE +L +A+NVL +KC + L++
Sbjct:   29 VDQSKSKVKIKLQRLTEDSIIFDLIGIDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQGFSDNEEAEATDENTIVFKLDVTCKFDP----------EHPKDPTKAIFSSVYSRDLEWVPQGNQEERFGLIRP--VHDDILIAKLRPGQSLALEAHCRKGIGKDHAKFSPVATASYRLMPKVELSEKIEGADAVSLMENCPVNLFDIEDV----GGVQSIVVKDQRACTMCRNCIREPGWDKKIRLGRQADHFIFSIESVGMIKPEELLLEALNVLVNKCNIALDS 321
The following BLAST results are available for this feature:
BLAST of NO18G01660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009833586.16.500e-7950.64hypothetical protein H257_09157 [Aphanomyces astac... [more]
XP_008872071.16.500e-7950.96hypothetical protein H310_08187 [Aphanomyces invad... [more]
POM57850.16.500e-7950.00DNA-directed RNA polymerase I and III subunit RPAC... [more]
OWZ09120.18.500e-7950.80DNA-directed RNA polymerase I and III subunit RPAC... [more]
POM64249.18.500e-7950.00DNA-directed RNA polymerase I and III subunit RPAC... [more]
XP_002896890.11.400e-7850.80DNA-directed RNA polymerase I and III subunit RPAC... [more]
XP_002997258.11.900e-7850.80DNA-directed RNA polymerase I and III subunit RPAC... [more]
CCI47619.14.700e-7751.13unnamed protein product [Albugo candida][more]
GAY02770.11.000e-7649.84DNA-directed RNA polymerase I and III subunit RPAC... [more]
XP_024581379.13.000e-7649.84dna-directed rna polymerase i and iii subunit [Pla... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004015NSK004015Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01660.1NO18G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100057g31gene7084Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01660.1NO18G01660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01660 ID=NO18G01660|Name=NO18G01660|organism=Nannochloropsis oceanica|type=gene|length=1298bp
GTGGCCTTGGCTTGCCTGCCCTTTTTTCCTTTGCTAACTGGCCCGCCATC
AAAAGCACACCCTCAAACAGACACCAGATGCCCCATATTGACAGGTAGCG
AAATCTTATTCCTCTTTGACTGCCCCCTTCCATCCATGCAACCAAGACAG
GCCTTGTAAACGACCCCACCGCCAATCCGACCCTCTCTTTCTCGACCTCC
CCACCCTGCAAGCAAAAATAAATGGCCACTCGCGTAGACTCCTACCTGGT
GGAAGCAGATCAGCTCTATGAGTCATACCGCTCCTTGTCTCTGGAGGAAG
CTAAAACAGTTGTGGAGCATCTGCGAGAAAACCTACGCATTCACATCGTC
AAGCTGGACGCAGAGGAAATGATATTTGATCTTATAGGTGCAGACGCCTC
CTTGGCAAACGCCTTGCGTCGTATCCTGCTAGCCGAAGTCCCTACCATGG
CCATCGAGACCGTGCACATGTTTGCCAACTCCTCTATCCTACATGATGAG
GTCCTGGCTCACCGCTTGGGCTTGATTCCCATCTTCGCAGACCCGGCACA
GTTTGAGTACATGCCCCCAGGGTCAAGCAGTGAGGCAACAGAGCACAACA
CCCTCGTCTTCGACATGGACATTTCCTTCCAACCACCGAAATCTGAAGAA
AGTAAGAATAACAATAACACACCACCATCAGCCTTGAACGCGCCCACCCT
CAGTGTCTTTTCCAACCAACTTGTTTGGCGACCAATGGGAGAGCAAGGCG
TTACGCTAGCAGAAGCCCCCCCTCGTGTCGTGCACTCCGACATCCTCCTA
GCTAAGCTGAAGCCGGGGCAACGCATCAAGGTTGAAGGTTGGTGTCGAAA
GGGGGTGGGGAAAGACCACGCAAAGTACTCTCCAGTTAGCACGGCGAGCT
ATAGGCTACTGCCGAGGGTGGAGATCGTCGAGCCCATCACAGGGGAAGAG
GCGGAGGGACTTGTGAAGCTATGTCCGATGAACGTTTTTGATATTGAAGA
TCTAGGAGGGAGGAAAGGAGGGGGAAAGAAGGCCGTGGTCAACCGTCCAC
GGGATTGCACCATGTGTCGAGAGTGCATCCGGGAGGGACCAGCGGTGGAG
AAAGTGAAGTTGAAACGGGTGGCGGACCACTTTATATTTAGCATTGAAAG
TGTGGGGGCCTTGTCGCCAGAGAGGATTTTGAAGGATGCAGTGAATGTGT
TAAGGCACAAGTGTACGGTGCTGCTGGAGGCGATTGAGAAGGAAATCGCG
GCGGGTGGAGGAGGAGGGGGTGAAGGAGGGGGGAGGTAGGTCGGGGGG
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protein sequence of NO18G01660.1

>NO18G01660.1-protein ID=NO18G01660.1-protein|Name=NO18G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MATRVDSYLVEADQLYESYRSLSLEEAKTVVEHLRENLRIHIVKLDAEEM
IFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLG
LIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPPKSEESKNNNNT
PPSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQ
RIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKL
CPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRV
ADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAIEKEIAAGGGGGG
EGGGR*
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Synonyms
Publications