NO18G01660.1, NO18G01660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01660.1
Unique NameNO18G01660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1298
Alignment locationchr18:531545..532842 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:531545..532842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01660.1 vs.
Match: EWM23363.1 (dna-directed rna polymerase i and iii subunit [Nannochloropsis gaditana])

HSP 1 Score: 513.1 bits (1320), Expect = 7.100e-142
Identity = 262/359 (72.98%), Postives = 297/359 (82.73%), Query Frame = 0 
Query:    2 ATRVDSYLVEADQLYESYRSLSLEEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPPKSE-----ESKNNNNT-PPSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDL--GGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAIEKEIAAGGGGGGEG 353
            ATR+++Y VEADQLYESYRSL+L E KTVVEHLRE +RIHIVK+D EEM+FDLIGADAS ANALRRILLAEVP+MAIE VH+FANSSILHDEVLAHRLGLIPI ADPA FE M PG ++EA EHNTLVF++D +F  PK E     +S N  NT   S L APT +V++  LVWRPMGEQ   LAE  P+V H DIL+AKLKPGQRIKVEGWCRKGVGKDHAKYSPV TASYRLLP ++ VEP+ GEEA+ LV+LCPM VFDIEDL  GG +G G+KAVV RPRDC+MCREC+REGP V +V+LKRVADHFIFSIESVG L+P+R+LKDAV VLR KCT LLEAIE E   G GGGG+G
Sbjct:    3 ATRIEAYRVEADQLYESYRSLTLAEVKTVVEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAIEAE-GRGEGGGGKG 360
The following BLAST results are available for this feature:
BLAST of NO18G01660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23363.17.100e-14272.98dna-directed rna polymerase i and iii subunit [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01660NO18G01660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01660.1NO18G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01660.1.cds1NO18G01660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01660.1 ID=NO18G01660.1|Name=NO18G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp
GTGGCCTTGGCTTGCCTGCCCTTTTTTCCTTTGCTAACTGGCCCGCCATC
AAAAGCACACCCTCAAACAGACACCAGATGCCCCATATTGACAGGTAGCG
AAATCTTATTCCTCTTTGACTGCCCCCTTCCATCCATGCAACCAAGACAG
GCCTTGTAAACGACCCCACCGCCAATCCGACCCTCTCTTTCTCGACCTCC
CCACCCTGCAAGCAAAAATAAATGGCCACTCGCGTAGACTCCTACCTGGT
GGAAGCAGATCAGCTCTATGAGTCATACCGCTCCTTGTCTCTGGAGGAAG
CTAAAACAGTTGTGGAGCATCTGCGAGAAAACCTACGCATTCACATCGTC
AAGCTGGACGCAGAGGAAATGATATTTGATCTTATAGGTGCAGACGCCTC
CTTGGCAAACGCCTTGCGTCGTATCCTGCTAGCCGAAGTCCCTACCATGG
CCATCGAGACCGTGCACATGTTTGCCAACTCCTCTATCCTACATGATGAG
GTCCTGGCTCACCGCTTGGGCTTGATTCCCATCTTCGCAGACCCGGCACA
GTTTGAGTACATGCCCCCAGGGTCAAGCAGTGAGGCAACAGAGCACAACA
CCCTCGTCTTCGACATGGACATTTCCTTCCAACCACCGAAATCTGAAGAA
AGTAAGAATAACAATAACACACCACCATCAGCCTTGAACGCGCCCACCCT
CAGTGTCTTTTCCAACCAACTTGTTTGGCGACCAATGGGAGAGCAAGGCG
TTACGCTAGCAGAAGCCCCCCCTCGTGTCGTGCACTCCGACATCCTCCTA
GCTAAGCTGAAGCCGGGGCAACGCATCAAGGTTGAAGGTTGGTGTCGAAA
GGGGGTGGGGAAAGACCACGCAAAGTACTCTCCAGTTAGCACGGCGAGCT
ATAGGCTACTGCCGAGGGTGGAGATCGTCGAGCCCATCACAGGGGAAGAG
GCGGAGGGACTTGTGAAGCTATGTCCGATGAACGTTTTTGATATTGAAGA
TCTAGGAGGGAGGAAAGGAGGGGGAAAGAAGGCCGTGGTCAACCGTCCAC
GGGATTGCACCATGTGTCGAGAGTGCATCCGGGAGGGACCAGCGGTGGAG
AAAGTGAAGTTGAAACGGGTGGCGGACCACTTTATATTTAGCATTGAAAG
TGTGGGGGCCTTGTCGCCAGAGAGGATTTTGAAGGATGCAGTGAATGTGT
TAAGGCACAAGTGTACGGTGCTGCTGGAGGCGATTGAGAAGGAAATCGCG
GCGGGTGGAGGAGGAGGGGGTGAAGGAGGGGGGAGGTAGGTCGGGGGG
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protein sequence of NO18G01660.1

>NO18G01660.1-protein ID=NO18G01660.1-protein|Name=NO18G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MATRVDSYLVEADQLYESYRSLSLEEAKTVVEHLRENLRIHIVKLDAEEM
IFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLG
LIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPPKSEESKNNNNT
PPSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQ
RIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKL
CPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRV
ADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAIEKEIAAGGGGGG
EGGGR*
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mRNA from alignment at chr18:531545..532842+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01660.1 ID=NO18G01660.1|Name=NO18G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp|location=Sequence derived from alignment at chr18:531545..532842+ (Nannochloropsis oceanica)
GTGGCCTTGGCTTGCCTGCCCTTTTTTCCTTTGCTAACTGGCCCGCCATC
AAAAGCACACCCTCAAACAGACACCAGATGCCCCATATTGACAGGTAGCG
AAATCTTATTCCTCTTTGACTGCCCCCTTCCATCCATGCAACCAAGACAG
GCCTTGTAAACGACCCCACCGCCAATCCGACCCTCTCTTTCTCGACCTCC
CCACCCTGCAAGCAAAAATAAATGGCCACTCGCGTAGACTCCTACCTGGT
GGAAGCAGATCAGCTCTATGAGTCATACCGCTCCTTGTCTCTGGAGGAAG
CTAAAACAGTTGTGGAGCATCTGCGAGAAAACCTACGCATTCACATCGTC
AAGCTGGACGCAGAGGAAATGATATTTGATCTTATAGGTGCAGACGCCTC
CTTGGCAAACGCCTTGCGTCGTATCCTGCTAGCCGAAGTCCCTACCATGG
CCATCGAGACCGTGCACATGTTTGCCAACTCCTCTATCCTACATGATGAG
GTCCTGGCTCACCGCTTGGGCTTGATTCCCATCTTCGCAGACCCGGCACA
GTTTGAGTACATGCCCCCAGGGTCAAGCAGTGAGGCAACAGAGCACAACA
CCCTCGTCTTCGACATGGACATTTCCTTCCAACCACCGAAATCTGAAGAA
AGTAAGAATAACAATAACACACCACCATCAGCCTTGAACGCGCCCACCCT
CAGTGTCTTTTCCAACCAACTTGTTTGGCGACCAATGGGAGAGCAAGGCG
TTACGCTAGCAGAAGCCCCCCCTCGTGTCGTGCACTCCGACATCCTCCTA
GCTAAGCTGAAGCCGGGGCAACGCATCAAGGTTGAAGGTTGGTGTCGAAA
GGGGGTGGGGAAAGACCACGCAAAGTACTCTCCAGTTAGCACGGCGAGCT
ATAGGCTACTGCCGAGGGTGGAGATCGTCGAGCCCATCACAGGGGAAGAG
GCGGAGGGACTTGTGAAGCTATGTCCGATGAACGTTTTTGATATTGAAGA
TCTAGGAGGGAGGAAAGGAGGGGGAAAGAAGGCCGTGGTCAACCGTCCAC
GGGATTGCACCATGTGTCGAGAGTGCATCCGGGAGGGACCAGCGGTGGAG
AAAGTGAAGTTGAAACGGGTGGCGGACCACTTTATATTTAGCATTGAAAG
TGTGGGGGCCTTGTCGCCAGAGAGGATTTTGAAGGATGCAGTGAATGTGT
TAAGGCACAAGTGTACGGTGCTGCTGGAGGCGATTGAGAAGGAAATCGCG
GCGGGTGGAGGAGGAGGGGGTGAAGGAGGGGGGAGGTAGGTCGGGGGG
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Coding sequence (CDS) from alignment at chr18:531545..532842+

>NO18G01660.1 ID=NO18G01660.1|Name=NO18G01660.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr18:531545..532842+ (Nannochloropsis oceanica)
ATGGCCACTCGCGTAGACTCCTACCTGGTGGAAGCAGATCAGCTCTATGA
GTCATACCGCTCCTTGTCTCTGGAGGAAGCTAAAACAGTTGTGGAGCATC
TGCGAGAAAACCTACGCATTCACATCGTCAAGCTGGACGCAGAGGAAATG
ATATTTGATCTTATAGGTGCAGACGCCTCCTTGGCAAACGCCTTGCGTCG
TATCCTGCTAGCCGAAGTCCCTACCATGGCCATCGAGACCGTGCACATGT
TTGCCAACTCCTCTATCCTACATGATGAGGTCCTGGCTCACCGCTTGGGC
TTGATTCCCATCTTCGCAGACCCGGCACAGTTTGAGTACATGCCCCCAGG
GTCAAGCAGTGAGGCAACAGAGCACAACACCCTCGTCTTCGACATGGACA
TTTCCTTCCAACCACCGAAATCTGAAGAAAGTAAGAATAACAATAACACA
CCACCATCAGCCTTGAACGCGCCCACCCTCAGTGTCTTTTCCAACCAACT
TGTTTGGCGACCAATGGGAGAGCAAGGCGTTACGCTAGCAGAAGCCCCCC
CTCGTGTCGTGCACTCCGACATCCTCCTAGCTAAGCTGAAGCCGGGGCAA
CGCATCAAGGTTGAAGGTTGGTGTCGAAAGGGGGTGGGGAAAGACCACGC
AAAGTACTCTCCAGTTAGCACGGCGAGCTATAGGCTACTGCCGAGGGTGG
AGATCGTCGAGCCCATCACAGGGGAAGAGGCGGAGGGACTTGTGAAGCTA
TGTCCGATGAACGTTTTTGATATTGAAGATCTAGGAGGGAGGAAAGGAGG
GGGAAAGAAGGCCGTGGTCAACCGTCCACGGGATTGCACCATGTGTCGAG
AGTGCATCCGGGAGGGACCAGCGGTGGAGAAAGTGAAGTTGAAACGGGTG
GCGGACCACTTTATATTTAGCATTGAAAGTGTGGGGGCCTTGTCGCCAGA
GAGGATTTTGAAGGATGCAGTGAATGTGTTAAGGCACAAGTGTACGGTGC
TGCTGGAGGCGATTGAGAAGGAAATCGCGGCGGGTGGAGGAGGAGGGGGT
GAAGGAGGGGGGAGGTAG
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Synonyms
Publications