NO18G01660, NO18G01660 (gene) Nannochloropsis oceanica

Overview
NameNO18G01660
Unique NameNO18G01660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1298
Alignment locationchr18:531545..532842 +

Link to JBrowse

Properties
Property NameValue
DescriptionDna-directed rna polymerase i and iii subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:531545..532842 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0016740transferase activity
GO:0005515protein binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR036643RNApol_insert_sf
IPR033901RNAPI/II_AC40
IPR011262DNA-dir_RNA_pol_insert
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
Homology
BLAST of NO18G01660 vs. NCBI_GenBank
Match: EWM23363.1 (dna-directed rna polymerase i and iii subunit [Nannochloropsis gaditana])

HSP 1 Score: 496.5 bits (1277), Expect = 6.800e-137
Identity = 249/348 (71.55%), Postives = 282/348 (81.03%), Query Frame = 0
Query:    2 ATRVDSYLVEADQLYESYRSLSLEEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISF------QPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDL--GGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAIEKE 342
            ATR+++Y VEADQLYESYRSL+L E KTVVEHLRE +RIHIVK+D EEM+FDLIGADAS ANALRRILLAEVP+MAIE VH+FANSSILHDEVLAHRLGLIPI ADPA FE M PG ++EA EHNTLVF++D +F                      S L APT +V++  LVWRPMGEQ   LAE  P+V H DIL+AKLKPGQRIKVEGWCRKGVGKDHAKYSPV TASYRLLP ++ VEP+ GEEA+ LV+LCPM VFDIEDL  GG +G G+KAVV RPRDC+MCREC+REGP V +V+LKRVADHFIFSIESVG L+P+R+LKDAV VLR KCT LLEAIE E
Sbjct:    3 ATRIEAYRVEADQLYESYRSLTLAEVKTVVEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAIEAE 350          
BLAST of NO18G01660 vs. NCBI_GenBank
Match: CBJ30416.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 323.2 bits (827), Expect = 1.000e-84
Identity = 181/352 (51.42%), Postives = 226/352 (64.20%), Query Frame = 0
Query:    1 MATRVDSYLVEADQLYESYRSLSLEEAK-----TVVEHLRENLRIHIVKL---DAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYM--PPGSSSEATEHNTLVFDMDISFQPXXXXXXXXXXXXXXSALNAP--TLSVFSNQLVWRPMGEQGVTL-AEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAIE 340
            M  RV  Y V+ D   E + + S +E K     +  E + + L +  V+       E++FDL+G DAS+ANALRRILLAEV T+AIE V+MF NSSI+HDE+LAHRLGLIPI A+P  FE++    G   E TE NT VF +++   P              S    P  T++VFS  + W P G+Q      E   R VH DIL+AKL+PGQ I  E  CRKG+GKDHAK+SPV+TASYRLLP V + E + G+EAE LV  CP+NVFDIEDLG   G GK+A V RPRDCTMCRECIRE    +KV L RVADHFIF IESVG L P+ +LKD++ VLR KC  ++  +E
Sbjct:    1 MLGRVTKYRVKNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVQSGGGHTNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMANPRMFEFVGEEGGEQDEPTEFNTCVFKLEVK-NPADPADMPDPMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLG---GAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEVE 348          
BLAST of NO18G01660 vs. NCBI_GenBank
Match: OQS00979.1 (DNA-directed RNA polymerase I and III subunit RPAC1 [Thraustotheca clavata])

HSP 1 Score: 308.1 bits (788), Expect = 3.400e-80
Identity = 165/314 (52.55%), Postives = 205/314 (65.29%), Query Frame = 0
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAI 339
            E  +  +E  ++N +I I +L  E+++FD IG DAS+ANA RRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGLIP+  DP  F+  P    +EAT+ NTLVF +D+  +                   A   SV+S  L W P G Q        P  V  DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRLLP ++   PI G++A+ L K CPMNVFDIED          AVV RPRDCTMCRECIR     EKVKL RV+DHFIFS+E+VG L PE +L +A+ VL  KC V LE++
Sbjct:   21 EATERFLESFKKNFKIKIQQLTDEDIVFDAIGIDASIANAFRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLQVDPRDFQSFPEHEEAEATDENTLVFKLDVVCE--------ADKDDPEDISKATNASVYSRHLEWIPQGMQEERFGNIRP--VSEDILIAKLRPGQCIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPIKGQDAKTLQKTCPMNVFDIED--------SHAVVARPRDCTMCRECIRAPGWDEKVKLGRVSDHFIFSVETVGMLKPEELLPEALKVLMSKCDVALESL 316          
BLAST of NO18G01660 vs. NCBI_GenBank
Match: OQR98104.1 (DNA-directed RNA polymerase I and III subunit RPAC1 [Achlya hypogyna])

HSP 1 Score: 307.0 bits (785), Expect = 7.700e-80
Identity = 164/314 (52.23%), Postives = 204/314 (64.97%), Query Frame = 0
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAI 339
            E +K  +E  ++N +I I  LD E ++FD++G DAS+ANA RRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGLIP+  DP  F+  P    +EAT+ NTLVF +D+  +                   A   SV+S  L W P G Q     +  P  V   IL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRLLP +    P+ G +A+ L K CPMNVFDIED          AVV RPRDCTMCRECIR     EKVKL RV+DHFIFS+E+VG L PE +L +A+ VL  KC V LE++
Sbjct:   21 EASKRFLETFKKNFKIKIQSLDDECIVFDMVGIDASIANAFRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLQVDPRDFQSFPEHEEAEATDENTLVFKLDVVCE--------ASKEDPTDISKATNASVYSRHLEWIPQGMQEERFGDIRP--VSESILIAKLRPGQCIALEAHCRKGVGKDHAKFSPVATASYRLLPEITFPAPVKGADAKTLQKTCPMNVFDIED--------SAAVVARPRDCTMCRECIRAPGWDEKVKLGRVSDHFIFSVETVGMLKPEELLPEALKVLMSKCDVALESL 316          
BLAST of NO18G01660 vs. NCBI_GenBank
Match: XP_008915724.1 (hypothetical protein PPTG_19124 [Phytophthora parasitica INRA-310] >ETI55259.1 hypothetical protein F443_02053 [Phytophthora parasitica P1569] >ETM54762.1 hypothetical protein L914_01950 [Phytophthora parasitica] >ETM98983.1 hypothetical protein PPTG_19124 [Phytophthora parasitica INRA-310] >ETO83993.1 hypothetical protein F444_02064 [Phytophthora parasitica P1976] >ETP53066.1 hypothetical protein F442_02006 [Phytophthora parasitica P10297] >KUF88415.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Phytophthora nicotianae] >KUF96639.1 hypothetical protein AM588_10006309 [Phytophthora nicotianae])

HSP 1 Score: 306.6 bits (784), Expect = 1.000e-79
Identity = 160/315 (50.79%), Postives = 209/315 (66.35%), Query Frame = 0
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDIS--FQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEA 338
            E + + VE  +  +++ I  L  EE++FDLIG DA++ANALRRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGL+P+  DP +F+  P    +EAT+ NT+VF +D++  F P                  A   SV+S  L W P G Q        P  VH DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRL+P+VE+ E + G EA+ LV+ C + +FDIED+    GG   AVV   R CTMCR CIRE    EK++L R +DHFIFS+ESVG + PE +L +A+NVL  KC + LE+
Sbjct:   23 ESSYSFVEQSKRQVKVKIQSLTDEEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAFPDNEEAEATDENTIVFKLDVTCKFDP----------EHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGSIRP--VHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELTEKVEGAEAKRLVEECQIGLFDIEDI----GGVPTAVVKDQRACTMCRNCIREPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKCNIALES 321          
BLAST of NO18G01660 vs. NCBI_GenBank
Match: ETL99722.1 (hypothetical protein L917_03475 [Phytophthora parasitica])

HSP 1 Score: 306.6 bits (784), Expect = 1.000e-79
Identity = 160/315 (50.79%), Postives = 209/315 (66.35%), Query Frame = 0
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDIS--FQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEA 338
            E + + VE  +  +++ I  L  EE++FDLIG DA++ANALRRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGL+P+  DP +F+  P    +EAT+ NT+VF +D++  F P                  A   SV+S  L W P G Q        P  VH DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRL+P+VE+ E + G EA+ LV+ C + +FDIED+    GG   AVV   R CTMCR CIRE    EK++L R +DHFIFS+ESVG + PE +L +A+NVL  KC + LE+
Sbjct:   23 ESSYSFVEQSKRQVKVKIQSLTDEEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAFPDNEEAEATDENTIVFKLDVTCKFDP----------QHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGSIRP--VHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELTEKVEGAEAKRLVEECQIGLFDIEDI----GGVPTAVVKDQRACTMCRNCIREPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKCNIALES 321          
BLAST of NO18G01660 vs. NCBI_GenBank
Match: ETK93167.1 (hypothetical protein L915_03611 [Phytophthora parasitica] >ETL46584.1 hypothetical protein L916_03556 [Phytophthora parasitica] >ETP25063.1 hypothetical protein F441_02019 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 306.2 bits (783), Expect = 1.300e-79
Identity = 160/315 (50.79%), Postives = 209/315 (66.35%), Query Frame = 0
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDIS--FQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEA 338
            E + + VE  +  +++ I  L  EE++FDLIG DA++ANALRRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGL+P+  DP +F+  P    +EAT+ NT+VF +D++  F P                  A   SV+S  L W P G Q        P  VH DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRL+P+VE+ E + G EA+ LV+ C + +FDIED+    GG   AVV   R CTMCR CIRE    EK++L R +DHFIFS+ESVG + PE +L +A+NVL  KC + LE+
Sbjct:   23 ESSYSFVEQSKRQVKVKIQSLTDEEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAFPDNEEAEATDENTIVFKLDVTCKFDP----------EHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGSIRP--VHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELTEKVEGAEAKRLVEECQIGLFDIEDI----GGVPTAVVKDQRVCTMCRNCIREPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKCNIALES 321          
BLAST of NO18G01660 vs. NCBI_GenBank
Match: XP_009539529.1 (hypothetical protein PHYSODRAFT_356217 [Phytophthora sojae] >EGZ05020.1 hypothetical protein PHYSODRAFT_356217 [Phytophthora sojae])

HSP 1 Score: 305.1 bits (780), Expect = 2.900e-79
Identity = 160/315 (50.79%), Postives = 208/315 (66.03%), Query Frame = 0
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDIS--FQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEA 338
            E + + VE  +  +++ I  L  EE++FDLIG DA++ANALRRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGL+P+  DP +F+  P    +EAT+ NT+VF +D++  F P                  A   SV+S  L W P G Q        P  VH DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRL+P+VE+ E + G +A+ LV+ C + +FDIED+    GG   AVV   R CTMCR CIRE    EK+ L R +DHFIFS+ESVG L PE +L +A+NVL  KC + LE+
Sbjct:   23 ESSYSFVEQSKRQVKVKIQSLTDEEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAFPDNEEAEATDENTIVFKLDVTCKFDP----------EHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGSIRP--VHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELTEKVQGADAKKLVEECQIGLFDIEDI----GGVPTAVVKDQRACTMCRNCIREPGWNEKISLGRQSDHFIFSVESVGMLKPEELLLEALNVLAEKCNIALES 321          
BLAST of NO18G01660 vs. NCBI_GenBank
Match: XP_012204450.1 (hypothetical protein SPRG_09634 [Saprolegnia parasitica CBS 223.65] >KDO24786.1 hypothetical protein SPRG_09634 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 305.1 bits (780), Expect = 2.900e-79
Identity = 160/314 (50.96%), Postives = 203/314 (64.65%), Query Frame = 0
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAI 339
            E +   +E  ++N +I I  LD E M+FD++G DAS+ANA RRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGLIP+  DP  F+  P    +EAT+ NTLVF +D+  +                   A   SV+S  L W P G Q        P  V  DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRLLP ++   P+ G +A+ L K CPMNVFDIED          A+V RPRDCTMCRECIR      KVKL RV+DHFI+S+E+VG L PE +L +A+ VL  KC V ++++
Sbjct:   21 EASSKFLESFKKNFKIKIQSLDEESMVFDMVGIDASIANAFRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLMVDPRDFQSFPEHEEAEATDENTLVFKLDVVCE--------ASKEDPSDISKATNASVYSRHLEWIPQGMQEERFGNIRP--VSEDILIAKLRPGQCIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPLKGADAKTLQKTCPMNVFDIED--------SAAIVARPRDCTMCRECIRAPGWDAKVKLGRVSDHFIYSVETVGMLKPEELLPEALKVLMAKCDVAVDSL 316          
BLAST of NO18G01660 vs. NCBI_GenBank
Match: XP_008611233.1 (DNA-directed RNA polymerase I and III subunit RPAC1 [Saprolegnia diclina VS20] >EQC35483.1 DNA-directed RNA polymerase I and III subunit RPAC1 [Saprolegnia diclina VS20])

HSP 1 Score: 304.7 bits (779), Expect = 3.800e-79
Identity = 161/314 (51.27%), Postives = 203/314 (64.65%), Query Frame = 0
Query:   25 EEAKTVVEHLRENLRIHIVKLDAEEMIFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLGLIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPXXXXXXXXXXXXXXSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQRIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKLCPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRVADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAI 339
            E +   +E  ++N +I I  LD E M+FD++G DAS+ANA RRILLAEVPTMAIE V+++ NSSI+ DEVLAHRLGLIP+  DP  F+  P    +EAT+ NTLVF +D+  +                   A   SV+S  L W P G Q        P  V  DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV+TASYRLLP ++   P+ G +A+ L K CPMNVFDIED          AVV RPRDCTMCRECIR      KVKL RV+DHFI+S+E+VG L PE +L +A+ VL  KC V ++++
Sbjct:   21 EASTKFLESFKKNFKIKIQSLDEESMVFDMVGIDASIANAFRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLMVDPRDFQSFPEHEEAEATDENTLVFKLDVVCE--------ASKEDPSDISKATNASVYSRHLEWIPQGMQEERFGNIRP--VSEDILIAKLRPGQCIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPLKGADAKTLQKTCPMNVFDIED--------SVAVVARPRDCTMCRECIRAPGWDAKVKLGRVSDHFIYSVETVGMLKPEELLPEALKVLMAKCDVAVDSL 316          
The following BLAST results are available for this feature:
BLAST of NO18G01660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23363.16.800e-13771.55dna-directed rna polymerase i and iii subunit [Nan... [more]
CBJ30416.11.000e-8451.42conserved unknown protein [Ectocarpus siliculosus][more]
OQS00979.13.400e-8052.55DNA-directed RNA polymerase I and III subunit RPAC... [more]
OQR98104.17.700e-8052.23DNA-directed RNA polymerase I and III subunit RPAC... [more]
XP_008915724.11.000e-7950.79hypothetical protein PPTG_19124 [Phytophthora para... [more]
ETL99722.11.000e-7950.79hypothetical protein L917_03475 [Phytophthora para... [more]
ETK93167.11.300e-7950.79hypothetical protein L915_03611 [Phytophthora para... [more]
XP_009539529.12.900e-7950.79hypothetical protein PHYSODRAFT_356217 [Phytophtho... [more]
XP_012204450.12.900e-7950.96hypothetical protein SPRG_09634 [Saprolegnia paras... [more]
XP_008611233.13.800e-7951.27DNA-directed RNA polymerase I and III subunit RPAC... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004015NSK004015Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01660.1NO18G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100057g31gene7084Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01660.1NO18G01660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01660 ID=NO18G01660|Name=NO18G01660|organism=Nannochloropsis oceanica|type=gene|length=1298bp
GTGGCCTTGGCTTGCCTGCCCTTTTTTCCTTTGCTAACTGGCCCGCCATC
AAAAGCACACCCTCAAACAGACACCAGATGCCCCATATTGACAGGTAGCG
AAATCTTATTCCTCTTTGACTGCCCCCTTCCATCCATGCAACCAAGACAG
GCCTTGTAAACGACCCCACCGCCAATCCGACCCTCTCTTTCTCGACCTCC
CCACCCTGCAAGCAAAAATAAATGGCCACTCGCGTAGACTCCTACCTGGT
GGAAGCAGATCAGCTCTATGAGTCATACCGCTCCTTGTCTCTGGAGGAAG
CTAAAACAGTTGTGGAGCATCTGCGAGAAAACCTACGCATTCACATCGTC
AAGCTGGACGCAGAGGAAATGATATTTGATCTTATAGGTGCAGACGCCTC
CTTGGCAAACGCCTTGCGTCGTATCCTGCTAGCCGAAGTCCCTACCATGG
CCATCGAGACCGTGCACATGTTTGCCAACTCCTCTATCCTACATGATGAG
GTCCTGGCTCACCGCTTGGGCTTGATTCCCATCTTCGCAGACCCGGCACA
GTTTGAGTACATGCCCCCAGGGTCAAGCAGTGAGGCAACAGAGCACAACA
CCCTCGTCTTCGACATGGACATTTCCTTCCAACCACCGAAATCTGAAGAA
AGTAAGAATAACAATAACACACCACCATCAGCCTTGAACGCGCCCACCCT
CAGTGTCTTTTCCAACCAACTTGTTTGGCGACCAATGGGAGAGCAAGGCG
TTACGCTAGCAGAAGCCCCCCCTCGTGTCGTGCACTCCGACATCCTCCTA
GCTAAGCTGAAGCCGGGGCAACGCATCAAGGTTGAAGGTTGGTGTCGAAA
GGGGGTGGGGAAAGACCACGCAAAGTACTCTCCAGTTAGCACGGCGAGCT
ATAGGCTACTGCCGAGGGTGGAGATCGTCGAGCCCATCACAGGGGAAGAG
GCGGAGGGACTTGTGAAGCTATGTCCGATGAACGTTTTTGATATTGAAGA
TCTAGGAGGGAGGAAAGGAGGGGGAAAGAAGGCCGTGGTCAACCGTCCAC
GGGATTGCACCATGTGTCGAGAGTGCATCCGGGAGGGACCAGCGGTGGAG
AAAGTGAAGTTGAAACGGGTGGCGGACCACTTTATATTTAGCATTGAAAG
TGTGGGGGCCTTGTCGCCAGAGAGGATTTTGAAGGATGCAGTGAATGTGT
TAAGGCACAAGTGTACGGTGCTGCTGGAGGCGATTGAGAAGGAAATCGCG
GCGGGTGGAGGAGGAGGGGGTGAAGGAGGGGGGAGGTAGGTCGGGGGG
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protein sequence of NO18G01660.1

>NO18G01660.1-protein ID=NO18G01660.1-protein|Name=NO18G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MATRVDSYLVEADQLYESYRSLSLEEAKTVVEHLRENLRIHIVKLDAEEM
IFDLIGADASLANALRRILLAEVPTMAIETVHMFANSSILHDEVLAHRLG
LIPIFADPAQFEYMPPGSSSEATEHNTLVFDMDISFQPPKSEESKNNNNT
PPSALNAPTLSVFSNQLVWRPMGEQGVTLAEAPPRVVHSDILLAKLKPGQ
RIKVEGWCRKGVGKDHAKYSPVSTASYRLLPRVEIVEPITGEEAEGLVKL
CPMNVFDIEDLGGRKGGGKKAVVNRPRDCTMCRECIREGPAVEKVKLKRV
ADHFIFSIESVGALSPERILKDAVNVLRHKCTVLLEAIEKEIAAGGGGGG
EGGGR*
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Synonyms
Publications