NO18G01470, NO18G01470 (gene) Nannochloropsis oceanica

Overview
NameNO18G01470
Unique NameNO18G01470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1327
Alignment locationchr18:484889..486215 -

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Properties
Property NameValue
DescriptionUPF0225 protein VV1358
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:484889..486215 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032710NTF2-like_dom_sf
Homology
[Close]
BLAST of NO18G01470 vs. NCBI_GenBank
Match: XP_005853837.1 (zn-binding protein, partial [Nannochloropsis gaditana CCMP526] >XP_005854274.1 zn-binding protein, partial [Nannochloropsis gaditana CCMP526] >EKU22086.1 zn-binding protein, partial [Nannochloropsis gaditana CCMP526] >EKU22522.1 zn-binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 293.5 bits (750), Expect = 5.700e-76
Identity = 145/212 (68.40%), Postives = 171/212 (80.66%), Query Frame = 0 
Query:   21 SLLVLPRVGHAFLLATPPSTTSTIS-ISTKPSNALHARVGGGFGFGKRVNGAGAEDEPTTSKFFDETIFSPYSKRRPVPPYDSTPCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLLSSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEGEAFITFRVKRHVWMSERSKFLKGEDGGWLFLDEQV 232
            ++L+L R  +AF+  T PS  S  S ++ +    L ARVGGGFGFGK+   A   D+    K+F+ TI+SPY  RRP+PP++STPCACGS +SY  CCFPLHKG  +A TPEALLRSRY+AY+HGFP+YLL++THPSS PMRPKR KAYL+LL IACSEENLKQLQ+GVQEAG TE EAFITFRVKRHVWMSERSKFL+GEDGGWLFLDEQV
Sbjct:   29 AVLILARTLYAFVSPTVPSRRSVESLVAHRVVPVLLARVGGGFGFGKKKTLASEVDD---LKYFEGTIYSPYPGRRPLPPFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEAFITFRVKRHVWMSERSKFLRGEDGGWLFLDEQV 237
[Close]
BLAST of NO18G01470 vs. NCBI_GenBank
Match: EWM23364.1 (hypothetical protein Naga_100057g18 [Nannochloropsis gaditana])

HSP 1 Score: 293.5 bits (750), Expect = 5.700e-76
Identity = 145/212 (68.40%), Postives = 171/212 (80.66%), Query Frame = 0 
Query:   21 SLLVLPRVGHAFLLATPPSTTSTIS-ISTKPSNALHARVGGGFGFGKRVNGAGAEDEPTTSKFFDETIFSPYSKRRPVPPYDSTPCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLLSSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEGEAFITFRVKRHVWMSERSKFLKGEDGGWLFLDEQV 232
            ++L+L R  +AF+  T PS  S  S ++ +    L ARVGGGFGFGK+   A   D+    K+F+ TI+SPY  RRP+PP++STPCACGS +SY  CCFPLHKG  +A TPEALLRSRY+AY+HGFP+YLL++THPSS PMRPKR KAYL+LL IACSEENLKQLQ+GVQEAG TE EAFITFRVKRHVWMSERSKFL+GEDGGWLFLDEQV
Sbjct:   22 AVLILARTLYAFVSPTVPSRRSVESLVAHRVVPVLLARVGGGFGFGKKKTLASEVDD---LKYFEGTIYSPYPGRRPLPPFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEAFITFRVKRHVWMSERSKFLRGEDGGWLFLDEQV 230
[Close]
BLAST of NO18G01470 vs. NCBI_GenBank
Match: WP_057166712.1 (hypothetical protein [Mycobacterium sp. Root265] >KRD17011.1 hypothetical protein ASE48_26370 [Mycobacterium sp. Root265])

HSP 1 Score: 102.4 bits (254), Expect = 1.900e-18
Identity = 54/138 (39.13%), Postives = 79/138 (57.25%), Query Frame = 0 
Query:  101 DSTPCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLLSSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEGE-AFITFRV------KRHVWMSERSKFLKGEDGGWLFLDEQV 232
            D+ PC CGSG++Y +CC PLH G V A T EAL+RSR++A+  G   YLLSS HP + P R   +            +   ++LQ+   EAGG + +   + FR       KRH+ + ERS+F +G DG W ++D ++
Sbjct:    5 DTGPCPCGSGQAYRDCCGPLHDGTVVAGTAEALMRSRFSAFARGRADYLLSSWHPGTRPARLDLD-----------DQITWRRLQIVDTEAGGADDDTGIVEFRAEYLQDGKRHI-LHERSRFRRGRDGSWRYVDGEI 130
[Close]
BLAST of NO18G01470 vs. NCBI_GenBank
Match: PNW83498.1 (hypothetical protein CHLRE_05g241639v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 99.0 bits (245), Expect = 2.100e-17
Identity = 55/138 (39.86%), Postives = 75/138 (54.35%), Query Frame = 0 
Query:  104 PCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLLSSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEGEAFITFRVKRHV-------------WMSERSKFLKGEDGGWLFLD 229
            PC CGSG +Y  CC PLH G  +A TPE LLRSRYTAY+   P+Y+  +THP S P       AY++ +       +   L +  Q+AG T  EAFITFR++R +              + ERS+F +   G W ++D
Sbjct:   75 PCPCGSGTAYEACCAPLHDGATRAATPEVLLRSRYTAYVAKNPEYIAETTHPDS-PEYSGSRTAYIRDVKNTMRRLDPMGLAIVSQDAGATPDEAFITFRLQRRIRDPDVPRNAPENDEVVERSRFAR-VGGRWFYMD 210
[Close]
BLAST of NO18G01470 vs. NCBI_GenBank
Match: WP_040772470.1 (hypothetical protein [Rhodococcus rhodnii])

HSP 1 Score: 96.7 bits (239), Expect = 1.000e-16
Identity = 54/140 (38.57%), Postives = 76/140 (54.29%), Query Frame = 0 
Query:   95 RPVPPYDSTPCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLLSSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGT-EGEAFITFRVKRHVW-----MSERSKFLKGEDGGWLFLD 229
            RP P  D  PC CG G+SY +CC PLH+G  +A + EAL+RSRYTA+  G   +L+ S HPS+ P     +            EE   +L++     GG  + E  +TFR   H       ++E S+F++ EDG WL+LD
Sbjct:    6 RPAPEPDRAPCPCGRGDSYGDCCGPLHRGERRAPSAEALMRSRYTAFAIGDAGHLVRSWHPSTAPEHVDLD-----------PEEQWDRLEIVATTGGGPFDSEGTVTFRAHHHRGGRAGVLAEHSRFVR-EDGRWLYLD 133
[Close]
BLAST of NO18G01470 vs. NCBI_GenBank
Match: XP_001691143.1 (predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 95.5 bits (236), Expect = 2.300e-16
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 0 
Query:  104 PCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLLSSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEGEAFITFRVKRHV 209
            PC CGSG +Y  CC PLH G  +A TPE LLRSRYTAY+   P+Y+  +THP S P       AY++ +       +   L +  Q+AG T  EAFITFR++R +
Sbjct:   42 PCPCGSGTAYEACCAPLHDGATRAATPEVLLRSRYTAYVAKNPEYIAETTHPDS-PEYSGSRTAYIRDVKNTMRRLDPMGLAIVSQDAGATPDEAFITFRLQRRI 145
[Close]
BLAST of NO18G01470 vs. NCBI_GenBank
Match: WP_064980086.1 (hypothetical protein [Mycobacterium mucogenicum] >OBJ43759.1 hypothetical protein A5630_18175 [Mycobacterium mucogenicum])

HSP 1 Score: 95.1 bits (235), Expect = 3.000e-16
Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 0 
Query:   99 PYDSTPCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLLSSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEGEA-FITFRVK------RHVWMSERSKFLKGEDGGWLFLD 229
            P ++ PC C +G  YA CC PLH+G   A T  AL+RSR+TA+  G   YLL++ HP + P       A L L +        ++LQ+   EAGGT+  A  + FR +      RH+ + ERS+F +G+DGGWL++D
Sbjct:    2 PTNNPPCRCDTGAEYAACCGPLHRGERSAATAVALMRSRFTAFALGEVGYLLATWHPDTRP-------ADLDLDDAVA----WRRLQIVDTEAGGTDDPAGVVQFRAQYVRDGSRHI-LHERSRFTRGDDGGWLYVD 126
[Close]
BLAST of NO18G01470 vs. NCBI_GenBank
Match: WP_020102965.1 (hypothetical protein [Mycobacterium sp. 360MFTsu5.1])

HSP 1 Score: 91.3 bits (225), Expect = 4.300e-15
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = 0 
Query:   99 PYDSTPCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLLSSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEG-EAFITFRVK------RHVWMSERSKFLKGEDGGWLFLD 229
            P ++ PC C +G  YA CC PLH+G   A T  AL+RSR+TA+  G   YLL++ HP + P     + A +            ++LQ+   EAGG +     + FR +      RH+ + ERS+F +G+DGGWL++D
Sbjct:    2 PTNNPPCRCDTGAEYAACCGPLHRGERSAATAVALMRSRFTAFALGEVGYLLATWHPDTRPADLDLDGAVV-----------WRRLQIVDTEAGGADDPTGVVQFRAQYVRDGSRHI-LHERSRFTRGDDGGWLYVD 126
[Close]
BLAST of NO18G01470 vs. NCBI_GenBank
Match: XP_002947052.1 (hypothetical protein VOLCADRAFT_103277 [Volvox carteri f. nagariensis] >EFJ51642.1 hypothetical protein VOLCADRAFT_103277 [Volvox carteri f. nagariensis])

HSP 1 Score: 90.1 bits (222), Expect = 9.600e-15
Identity = 52/140 (37.14%), Postives = 74/140 (52.86%), Query Frame = 0 
Query:  105 CACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLLSSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEGEAFITFRVKRHV--------------WMSERSKFLKGEDGGWLFLDEQ 231
            C CGSG  Y  CC P H+G     TPEALLRSRY+AY+   P ++  +THP S P       +Y+  +       +  QL +   E G ++ EAFITFR+KR V               ++ERS+F++ +   W++LD Q
Sbjct:   72 CPCGSGAVYEACCLPYHQGPAVPPTPEALLRSRYSAYVAKEPAFIADTTHPDS-PEYTGSRASYMGTVKQTMRRLDPLQLTLLGSEPGTSQDEAFITFRLKRRVRDPEAPKGAAAEVDELTERSRFIRVK-ARWMYLDSQ 209
[Close]
BLAST of NO18G01470 vs. NCBI_GenBank
Match: SHW26150.1 (seC-C motif domain-containing protein [Mycobacterium abscessus subsp. abscessus])

HSP 1 Score: 90.1 bits (222), Expect = 9.600e-15
Identity = 52/138 (37.68%), Postives = 75/138 (54.35%), Query Frame = 0 
Query:   98 PPYDSTPCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLLSSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEGEA-FITFRVK------RHVWMSERSKFLKGEDGGWLFLD 229
            PP ++ PC C +G  Y  CC PLH+G   A T  AL+RSR+TA+  G   YLL++ HP S P     + A +            ++LQ+   EAGG +  A  + FR +      RH+ + ERS+F +G DG WL++D
Sbjct:    6 PPTNNQPCRCDTGAEYDACCGPLHRGERAAATAVALMRSRFTAFALGDVDYLLATWHPGSRPADLDLDDAVV-----------WRRLQIVDTEAGGADDPAGVVQFRAQYVRDGSRHI-LHERSRFTRGGDGRWLYVD 131
The following BLAST results are available for this feature:
BLAST of NO18G01470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853837.15.700e-7668.40zn-binding protein, partial [Nannochloropsis gadit... [more]
EWM23364.15.700e-7668.40hypothetical protein Naga_100057g18 [Nannochlorops... [more]
WP_057166712.11.900e-1839.13hypothetical protein [Mycobacterium sp. Root265] >... [more]
PNW83498.12.100e-1739.86hypothetical protein CHLRE_05g241639v5 [Chlamydomo... [more]
WP_040772470.11.000e-1638.57hypothetical protein [Rhodococcus rhodnii][more]
XP_001691143.12.300e-1645.71predicted protein, partial [Chlamydomonas reinhard... [more]
WP_064980086.13.000e-1640.15hypothetical protein [Mycobacterium mucogenicum] >... [more]
WP_020102965.14.300e-1537.23hypothetical protein [Mycobacterium sp. 360MFTsu5.... [more]
XP_002947052.19.600e-1537.14hypothetical protein VOLCADRAFT_103277 [Volvox car... [more]
SHW26150.19.600e-1537.68seC-C motif domain-containing protein [Mycobacteri... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004003NSK004003Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01470.1NO18G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608026gene_9077Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g18gene7096Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01470.1NO18G01470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01470 ID=NO18G01470|Name=NO18G01470|organism=Nannochloropsis oceanica|type=gene|length=1327bp
CAGGTCTCCTCCTCTCGTGTAAATATGCCCAGCCCTTCGTGGGTCTCCTT
CTTTTCTTTTCTCATTGGCTTCTTCGTTGTCTGCAGCCTCCTTGTCCTTC
CACGCGTCGGCCATGCCTTCCTCCTGGCCACTCCTCCGTCCACGACCAGC
ACCATTAGCATCTCTACGAAGCCCAGCAACGCGTTGCACGCACGAGTCGG
CGGTGGGTTTGGATTTGGCAAGCGCGTGAACGGCGCGGGGGCGGAAGACG
AACCCACCACAAGCAAGTTCTTCGACGAGACCATTTTCTCCCCGTACTCC
AAACGCCGCCCCGTCCCTCCCTATGACAGCACCCCTTGCGCCTGCGGCTC
CGGTGAATCTTACGCCAACTGCTGCTTTCCCTTGCATAAAGGCTTGGTCA
AGGCCCAGACACCCGAGGCACTGCTTCGGTCACGATACACAGCCTACCTG
CACGGCTTCCCCAAGTATCTCCTCTCGTCCACTCACCCCTCCTCGGAGCC
CATGCGGCCCAAGCGTGAAAAAGCATATTTACAACTCTTGAACATTGCAT
GCAGTGAAGAAAATCTGAAACAGTTGCAGGTGGGAGTGCAGGAGGCGGGG
GGGACGGAAGGAGAGGCTTTCATCACCTTCAGAGTGAAGCGGCATGTGTG
GATGAGTGAACGGAGCAAGTTTTTGAAGGGCGAAGACGGGGGATGGTTGT
TTTTGGACGAGCAGGTTTAAAGTGAGGGGGCGAATATGAATGGTGAGTCT
TTGGGGTTTCTTTATGAAAGGAGACGGGTCGAAAAGAGCGAAACAGGTAG
ACCCAGCTGAAACCGTGGAATTGATCTACTACCTACCGACCTACAGCCCG
CAGGCAGGCAGGGTTAGGATCAAAGTCGGAGCAAAGTCAGATCACCGATG
ACGAGAGTTGCTGTAATTGGTACACATTCTCACATAAATGTGGAAGTGGT
CGAGGGAGTGAGGAAAGCGATCGAAGCCTTTACCACCCCAATCGTTAGGC
TCCTTGTCCGTTGCCGACACCACGCCGTGCAACTCGTTGATTCAGACGAT
ACAATGGCTTCTCTTTCCCACTCCGCTTAAGACGGTCTCCTCACGACTGA
TTCACCACATGGACTCCTCACTTGCCTTTCTCTCAATAAGTCAGATATAC
AAGCGCAGATGATGGACGCGGTGCGAGGGATGTAAAACCTCATCCTTTTA
CCCATTTTACTCTTTAAAGCTCGTCTTGAAAGTCATCGAAAGAGAATAAA
GTATCCTCAAGTACGTAGCGACAAGAAAGCGCAGGACGCATGCAAAAATC
AAGATACTGGTCACCGGGGGAAGTAGC
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protein sequence of NO18G01470.1

>NO18G01470.1-protein ID=NO18G01470.1-protein|Name=NO18G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MPSPSWVSFFSFLIGFFVVCSLLVLPRVGHAFLLATPPSTTSTISISTKP
SNALHARVGGGFGFGKRVNGAGAEDEPTTSKFFDETIFSPYSKRRPVPPY
DSTPCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLL
SSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEGEAFI
TFRVKRHVWMSERSKFLKGEDGGWLFLDEQV*
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Synonyms
Publications