NO18G01470.1, NO18G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01470.1
Unique NameNO18G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1327
Alignment locationchr18:484889..486215 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:484889..486215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01470.1 vs.
Match: XP_005853837.1 (zn-binding protein, partial [Nannochloropsis gaditana CCMP526]; XP_005854274.1 zn-binding protein, partial [Nannochloropsis gaditana CCMP526]; EKU22086.1 zn-binding protein, partial [Nannochloropsis gaditana CCMP526]; EKU22522.1 zn-binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 293.5 bits (750), Expect = 5.700e-76
Identity = 145/212 (68.40%), Postives = 171/212 (80.66%), Query Frame = 0 
Query:   21 SLLVLPRVGHAFLLATPPSTTSTIS-ISTKPSNALHARVGGGFGFGKRVNGAGAEDEPTTSKFFDETIFSPYSKRRPVPPYDSTPCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLLSSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEGEAFITFRVKRHVWMSERSKFLKGEDGGWLFLDEQV 232
            ++L+L R  +AF+  T PS  S  S ++ +    L ARVGGGFGFGK+   A   D+    K+F+ TI+SPY  RRP+PP++STPCACGS +SY  CCFPLHKG  +A TPEALLRSRY+AY+HGFP+YLL++THPSS PMRPKR KAYL+LL IACSEENLKQLQ+GVQEAG TE EAFITFRVKRHVWMSERSKFL+GEDGGWLFLDEQV
Sbjct:   29 AVLILARTLYAFVSPTVPSRRSVESLVAHRVVPVLLARVGGGFGFGKKKTLASEVDD---LKYFEGTIYSPYPGRRPLPPFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEAFITFRVKRHVWMSERSKFLRGEDGGWLFLDEQV 237
The following BLAST results are available for this feature:
BLAST of NO18G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853837.15.700e-7668.40zn-binding protein, partial [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01470NO18G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01470.1NO18G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01470.1.cds1NO18G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01470.1 ID=NO18G01470.1|Name=NO18G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1327bp
CAGGTCTCCTCCTCTCGTGTAAATATGCCCAGCCCTTCGTGGGTCTCCTT
CTTTTCTTTTCTCATTGGCTTCTTCGTTGTCTGCAGCCTCCTTGTCCTTC
CACGCGTCGGCCATGCCTTCCTCCTGGCCACTCCTCCGTCCACGACCAGC
ACCATTAGCATCTCTACGAAGCCCAGCAACGCGTTGCACGCACGAGTCGG
CGGTGGGTTTGGATTTGGCAAGCGCGTGAACGGCGCGGGGGCGGAAGACG
AACCCACCACAAGCAAGTTCTTCGACGAGACCATTTTCTCCCCGTACTCC
AAACGCCGCCCCGTCCCTCCCTATGACAGCACCCCTTGCGCCTGCGGCTC
CGGTGAATCTTACGCCAACTGCTGCTTTCCCTTGCATAAAGGCTTGGTCA
AGGCCCAGACACCCGAGGCACTGCTTCGGTCACGATACACAGCCTACCTG
CACGGCTTCCCCAAGTATCTCCTCTCGTCCACTCACCCCTCCTCGGAGCC
CATGCGGCCCAAGCGTGAAAAAGCATATTTACAACTCTTGAACATTGCAT
GCAGTGAAGAAAATCTGAAACAGTTGCAGGTGGGAGTGCAGGAGGCGGGG
GGGACGGAAGGAGAGGCTTTCATCACCTTCAGAGTGAAGCGGCATGTGTG
GATGAGTGAACGGAGCAAGTTTTTGAAGGGCGAAGACGGGGGATGGTTGT
TTTTGGACGAGCAGGTTTAAAGTGAGGGGGCGAATATGAATGGTGAGTCT
TTGGGGTTTCTTTATGAAAGGAGACGGGTCGAAAAGAGCGAAACAGGTAG
ACCCAGCTGAAACCGTGGAATTGATCTACTACCTACCGACCTACAGCCCG
CAGGCAGGCAGGGTTAGGATCAAAGTCGGAGCAAAGTCAGATCACCGATG
ACGAGAGTTGCTGTAATTGGTACACATTCTCACATAAATGTGGAAGTGGT
CGAGGGAGTGAGGAAAGCGATCGAAGCCTTTACCACCCCAATCGTTAGGC
TCCTTGTCCGTTGCCGACACCACGCCGTGCAACTCGTTGATTCAGACGAT
ACAATGGCTTCTCTTTCCCACTCCGCTTAAGACGGTCTCCTCACGACTGA
TTCACCACATGGACTCCTCACTTGCCTTTCTCTCAATAAGTCAGATATAC
AAGCGCAGATGATGGACGCGGTGCGAGGGATGTAAAACCTCATCCTTTTA
CCCATTTTACTCTTTAAAGCTCGTCTTGAAAGTCATCGAAAGAGAATAAA
GTATCCTCAAGTACGTAGCGACAAGAAAGCGCAGGACGCATGCAAAAATC
AAGATACTGGTCACCGGGGGAAGTAGC
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protein sequence of NO18G01470.1

>NO18G01470.1-protein ID=NO18G01470.1-protein|Name=NO18G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MPSPSWVSFFSFLIGFFVVCSLLVLPRVGHAFLLATPPSTTSTISISTKP
SNALHARVGGGFGFGKRVNGAGAEDEPTTSKFFDETIFSPYSKRRPVPPY
DSTPCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLL
SSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEGEAFI
TFRVKRHVWMSERSKFLKGEDGGWLFLDEQV*
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mRNA from alignment at chr18:484889..486215-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01470.1 ID=NO18G01470.1|Name=NO18G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1327bp|location=Sequence derived from alignment at chr18:484889..486215- (Nannochloropsis oceanica)
CAGGTCTCCTCCTCTCGTGTAAATATGCCCAGCCCTTCGTGGGTCTCCTT
CTTTTCTTTTCTCATTGGCTTCTTCGTTGTCTGCAGCCTCCTTGTCCTTC
CACGCGTCGGCCATGCCTTCCTCCTGGCCACTCCTCCGTCCACGACCAGC
ACCATTAGCATCTCTACGAAGCCCAGCAACGCGTTGCACGCACGAGTCGG
CGGTGGGTTTGGATTTGGCAAGCGCGTGAACGGCGCGGGGGCGGAAGACG
AACCCACCACAAGCAAGTTCTTCGACGAGACCATTTTCTCCCCGTACTCC
AAACGCCGCCCCGTCCCTCCCTATGACAGCACCCCTTGCGCCTGCGGCTC
CGGTGAATCTTACGCCAACTGCTGCTTTCCCTTGCATAAAGGCTTGGTCA
AGGCCCAGACACCCGAGGCACTGCTTCGGTCACGATACACAGCCTACCTG
CACGGCTTCCCCAAGTATCTCCTCTCGTCCACTCACCCCTCCTCGGAGCC
CATGCGGCCCAAGCGTGAAAAAGCATATTTACAACTCTTGAACATTGCAT
GCAGTGAAGAAAATCTGAAACAGTTGCAGGTGGGAGTGCAGGAGGCGGGG
GGGACGGAAGGAGAGGCTTTCATCACCTTCAGAGTGAAGCGGCATGTGTG
GATGAGTGAACGGAGCAAGTTTTTGAAGGGCGAAGACGGGGGATGGTTGT
TTTTGGACGAGCAGGTTTAAAGTGAGGGGGCGAATATGAATGGTGAGTCT
TTGGGGTTTCTTTATGAAAGGAGACGGGTCGAAAAGAGCGAAACAGGTAG
ACCCAGCTGAAACCGTGGAATTGATCTACTACCTACCGACCTACAGCCCG
CAGGCAGGCAGGGTTAGGATCAAAGTCGGAGCAAAGTCAGATCACCGATG
ACGAGAGTTGCTGTAATTGGTACACATTCTCACATAAATGTGGAAGTGGT
CGAGGGAGTGAGGAAAGCGATCGAAGCCTTTACCACCCCAATCGTTAGGC
TCCTTGTCCGTTGCCGACACCACGCCGTGCAACTCGTTGATTCAGACGAT
ACAATGGCTTCTCTTTCCCACTCCGCTTAAGACGGTCTCCTCACGACTGA
TTCACCACATGGACTCCTCACTTGCCTTTCTCTCAATAAGTCAGATATAC
AAGCGCAGATGATGGACGCGGTGCGAGGGATGTAAAACCTCATCCTTTTA
CCCATTTTACTCTTTAAAGCTCGTCTTGAAAGTCATCGAAAGAGAATAAA
GTATCCTCAAGTACGTAGCGACAAGAAAGCGCAGGACGCATGCAAAAATC
AAGATACTGGTCACCGGGGGAAGTAGC
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Coding sequence (CDS) from alignment at chr18:484889..486215-

>NO18G01470.1 ID=NO18G01470.1|Name=NO18G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr18:484889..486215- (Nannochloropsis oceanica)
ATGCCCAGCCCTTCGTGGGTCTCCTTCTTTTCTTTTCTCATTGGCTTCTT
CGTTGTCTGCAGCCTCCTTGTCCTTCCACGCGTCGGCCATGCCTTCCTCC
TGGCCACTCCTCCGTCCACGACCAGCACCATTAGCATCTCTACGAAGCCC
AGCAACGCGTTGCACGCACGAGTCGGCGGTGGGTTTGGATTTGGCAAGCG
CGTGAACGGCGCGGGGGCGGAAGACGAACCCACCACAAGCAAGTTCTTCG
ACGAGACCATTTTCTCCCCGTACTCCAAACGCCGCCCCGTCCCTCCCTAT
GACAGCACCCCTTGCGCCTGCGGCTCCGGTGAATCTTACGCCAACTGCTG
CTTTCCCTTGCATAAAGGCTTGGTCAAGGCCCAGACACCCGAGGCACTGC
TTCGGTCACGATACACAGCCTACCTGCACGGCTTCCCCAAGTATCTCCTC
TCGTCCACTCACCCCTCCTCGGAGCCCATGCGGCCCAAGCGTGAAAAAGC
ATATTTACAACTCTTGAACATTGCATGCAGTGAAGAAAATCTGAAACAGT
TGCAGGTGGGAGTGCAGGAGGCGGGGGGGACGGAAGGAGAGGCTTTCATC
ACCTTCAGAGTGAAGCGGCATGTGTGGATGAGTGAACGGAGCAAGTTTTT
GAAGGGCGAAGACGGGGGATGGTTGTTTTTGGACGAGCAGGTTTAA
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Synonyms
Publications