NO18G01450, NO18G01450 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G01450 vs. NCBI_GenBank
Match: EWM23373.1 (single-stranded dna-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 169.9 bits (429), Expect = 1.400e-38 Identity = 80/117 (68.38%), Postives = 98/117 (83.76%), Query Frame = 0 Query: 105 SVINQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRVKRVEVLQTARTQ 222 S++NQVMLVG LGSEPAVKYL+SGNCVLSIS+AVN+E P EVDWIR+EAWG+ AE +AA ARKGS+VWVVG+LVTNSWVD+YGQNR++LKVR++R+EVLQ+ R+Q Sbjct: 119 SILNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRYGQNRNELKVRIRRIEVLQSGRSQ 235
BLAST of NO18G01450 vs. NCBI_GenBank
Match: CBN77565.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 90.1 bits (222), Expect = 1.400e-14 Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 0 Query: 107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVE-GGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRVKRVEVLQTARTQ 222 +N V L G LG +P KY DSG VL++SLAV +E P + + G E DW ++E W + AE A +KG +V V G L SW+D+ G +R+ +K+ V+ +EVL + Q Sbjct: 49 LNMVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPLERKALGIVQGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTGGLSLQSWIDREGNDRTTVKILVQNLEVLDSRAEQ 164
BLAST of NO18G01450 vs. NCBI_GenBank
Match: OGC00617.1 (hypothetical protein A2V82_01805 [candidate division KSB1 bacterium RBG_16_48_16]) HSP 1 Score: 89.0 bits (219), Expect = 3.000e-14 Identity = 45/118 (38.14%), Postives = 72/118 (61.02%), Query Frame = 0 Query: 107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRVKRVEVLQTARTQMPA 225 +N+VML+G LG+EP +KY SG VL++S+A N T + +G + +W RV W K+AE +A A+KG++V+V G+L T SW DK G R +++ +++L++ PA Sbjct: 9 LNKVMLIGRLGAEPELKYTASGVAVLTLSIATN-----TRWKAQDGNQQEQTEWHRVVVWRKLAEMIAQYAQKGTRVYVEGRLATRSWQDKDGIKRYSTEIQGDHMQLLESRGEAAPA 121
BLAST of NO18G01450 vs. NCBI_GenBank
Match: EJK63431.1 (hypothetical protein THAOC_15908 [Thalassiosira oceanica]) HSP 1 Score: 87.8 bits (216), Expect = 6.700e-14 Identity = 46/114 (40.35%), Postives = 70/114 (61.40%), Query Frame = 0 Query: 107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPP--TAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKY-GQNRSDLKVRVKRVEVLQT 218 +N V LVG +G+EP KY D G VL++SLA ++ P VR ++ G E DW +E WG+ AE +A KG+++ + G LV +SW+DK G R K+ V++V+VL++ Sbjct: 80 LNSVTLVGRVGNEPEPKYFDDGKVVLNLSLACKRKYHPLERKVREIK-SGEEETDWFALEIWGRDAEYVANYVDKGARMGITGSLVQDSWIDKVSGMKRRKPKIAVRQVDVLES 192
BLAST of NO18G01450 vs. NCBI_GenBank
Match: GBD02165.1 (Single-stranded DNA-binding protein [bacterium HR18]) HSP 1 Score: 86.7 bits (213), Expect = 1.500e-13 Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 0 Query: 107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRVKRVEVLQTARTQMP 224 IN+V+LVGNLG +P V+Y SG V ++ LA N+ A R EG +W + AWG++AE + RKGSK++V G L T SW D+ G R +++++ + +L +P Sbjct: 5 INKVILVGNLGQDPEVRYTPSGTAVCNMRLATNE-----AYRDPEGNLVERTEWHNLVAWGRLAEICSQYLRKGSKIYVEGSLQTRSWEDREGNTRYTTEIKIREMVMLDGRGEAIP 116
BLAST of NO18G01450 vs. NCBI_GenBank
Match: WP_075348687.1 (single-stranded DNA-binding protein [Algoriphagus marinus]) HSP 1 Score: 85.1 bits (209), Expect = 4.400e-13 Identity = 40/103 (38.83%), Postives = 65/103 (63.11%), Query Frame = 0 Query: 107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRV 210 +N+V+LVGNLG++P VKYL+ N V ++SLA + A + G + +W +E WG+ A+ +KGS+++V GK+ ++ W D+ GQNR +K+RV Sbjct: 4 VNKVILVGNLGADPEVKYLEGDNVVANLSLATTE-----AYKDRSGNRVEQTEWHDLELWGQQAKIAEQYLKKGSQIYVEGKIKSDKWTDEQGQNRKRMKIRV 101
BLAST of NO18G01450 vs. NCBI_GenBank
Match: WP_074225802.1 (single-stranded DNA-binding protein [Algoriphagus halophilus] >SIO03485.1 single-strand binding protein [Algoriphagus halophilus]) HSP 1 Score: 84.7 bits (208), Expect = 5.700e-13 Identity = 40/103 (38.83%), Postives = 65/103 (63.11%), Query Frame = 0 Query: 107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRV 210 +N+V+LVGNLG++P VKYL+ N V +ISLA + A + G + +W +E WG+ A+ +KGS+++V GK+ ++ W D+ GQNR +++RV Sbjct: 4 VNKVILVGNLGADPEVKYLEGDNVVANISLATTE-----AYKDRNGNRVEQTEWHDLELWGQQAKIAEQYLKKGSQIYVEGKIKSDKWTDEQGQNRKKVRIRV 101
BLAST of NO18G01450 vs. NCBI_GenBank
Match: WP_057937108.1 (single-stranded DNA-binding protein [Algoriphagus resistens]) HSP 1 Score: 83.6 bits (205), Expect = 1.300e-12 Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 0 Query: 107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRV 210 +N+V+LVGNLG++P VKYL+ N V ++SLA + A + G + +W +E WG A+ +KGS+++V GK+ T+ W D+ GQNR K+RV Sbjct: 4 VNKVILVGNLGADPEVKYLEGDNAVANVSLATTE-----AYKNRNGERVEQTEWHDLEMWGAQAKIAEQYLKKGSQIYVEGKIKTDKWQDEQGQNRYRTKIRV 101
BLAST of NO18G01450 vs. NCBI_GenBank
Match: XP_003062879.1 (predicted protein, partial [Micromonas pusilla CCMP1545] >EEH52818.1 predicted protein, partial [Micromonas pusilla CCMP1545]) HSP 1 Score: 83.2 bits (204), Expect = 1.700e-12 Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0 Query: 108 NQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPT----AVRGVEGGGTNEVD--WIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDK-YGQNRSDLKV 208 N V L+GN G +P + +SGNCV +++AV + P G+ GGG +E D W+ VEAW LA KG ++ V G++ TN+WVDK GQNRS +K+ Sbjct: 3 NTVTLIGNAGMDPEIVTFESGNCVARVNIAVRGKKPMADDGFGGPGMGGGGDDESDTHWLEVEAWNDAGRQLADHVTKGRQIRVTGRIKTNTWVDKATGQNRSKVKI 109
BLAST of NO18G01450 vs. NCBI_GenBank
Match: WP_086500768.1 (single-stranded DNA-binding protein [Algoriphagus ratkowskyi]) HSP 1 Score: 83.2 bits (204), Expect = 1.700e-12 Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 0 Query: 107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRV 210 +N+V+LVGNLGS+P +KYL+ N V + S+A + A + G + +W +E WG A+ +KGS+++V GKL T+ W D+ GQNR K+RV Sbjct: 4 VNKVILVGNLGSDPEIKYLEGDNAVANFSIATTE-----AYKNRNGERVEQTEWHDLEMWGAQAKIAEQYLKKGSQIYVEGKLKTDKWQDEQGQNRYRTKIRV 101 The following BLAST results are available for this feature:
BLAST of NO18G01450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G01450 ID=NO18G01450|Name=NO18G01450|organism=Nannochloropsis oceanica|type=gene|length=1343bpback to top protein sequence of NO18G01450.1 >NO18G01450.1-protein ID=NO18G01450.1-protein|Name=NO18G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bpback to top Synonyms
Publications
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