NO18G01450, NO18G01450 (gene) Nannochloropsis oceanica

Overview
NameNO18G01450
Unique NameNO18G01450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1343
Alignment locationchr18:478687..480029 -

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Properties
Property NameValue
DescriptionSingle-stranded dna-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:478687..480029 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003697single-stranded DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR011344ssDNA-bd
IPR000424Primosome_PriB/ssb
Homology
BLAST of NO18G01450 vs. NCBI_GenBank
Match: EWM23373.1 (single-stranded dna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 169.9 bits (429), Expect = 1.400e-38
Identity = 80/117 (68.38%), Postives = 98/117 (83.76%), Query Frame = 0
Query:  105 SVINQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRVKRVEVLQTARTQ 222
            S++NQVMLVG LGSEPAVKYL+SGNCVLSIS+AVN+E  P            EVDWIR+EAWG+ AE +AA ARKGS+VWVVG+LVTNSWVD+YGQNR++LKVR++R+EVLQ+ R+Q
Sbjct:  119 SILNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRYGQNRNELKVRIRRIEVLQSGRSQ 235          
BLAST of NO18G01450 vs. NCBI_GenBank
Match: CBN77565.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.1 bits (222), Expect = 1.400e-14
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 0
Query:  107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVE-GGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRVKRVEVLQTARTQ 222
            +N V L G LG +P  KY DSG  VL++SLAV +E  P   + +    G  E DW ++E W + AE  A   +KG +V V G L   SW+D+ G +R+ +K+ V+ +EVL +   Q
Sbjct:   49 LNMVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPLERKALGIVQGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTGGLSLQSWIDREGNDRTTVKILVQNLEVLDSRAEQ 164          
BLAST of NO18G01450 vs. NCBI_GenBank
Match: OGC00617.1 (hypothetical protein A2V82_01805 [candidate division KSB1 bacterium RBG_16_48_16])

HSP 1 Score: 89.0 bits (219), Expect = 3.000e-14
Identity = 45/118 (38.14%), Postives = 72/118 (61.02%), Query Frame = 0
Query:  107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRVKRVEVLQTARTQMPA 225
            +N+VML+G LG+EP +KY  SG  VL++S+A N     T  +  +G    + +W RV  W K+AE +A  A+KG++V+V G+L T SW DK G  R   +++   +++L++     PA
Sbjct:    9 LNKVMLIGRLGAEPELKYTASGVAVLTLSIATN-----TRWKAQDGNQQEQTEWHRVVVWRKLAEMIAQYAQKGTRVYVEGRLATRSWQDKDGIKRYSTEIQGDHMQLLESRGEAAPA 121          
BLAST of NO18G01450 vs. NCBI_GenBank
Match: EJK63431.1 (hypothetical protein THAOC_15908 [Thalassiosira oceanica])

HSP 1 Score: 87.8 bits (216), Expect = 6.700e-14
Identity = 46/114 (40.35%), Postives = 70/114 (61.40%), Query Frame = 0
Query:  107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPP--TAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKY-GQNRSDLKVRVKRVEVLQT 218
            +N V LVG +G+EP  KY D G  VL++SLA  ++  P    VR ++  G  E DW  +E WG+ AE +A    KG+++ + G LV +SW+DK  G  R   K+ V++V+VL++
Sbjct:   80 LNSVTLVGRVGNEPEPKYFDDGKVVLNLSLACKRKYHPLERKVREIK-SGEEETDWFALEIWGRDAEYVANYVDKGARMGITGSLVQDSWIDKVSGMKRRKPKIAVRQVDVLES 192          
BLAST of NO18G01450 vs. NCBI_GenBank
Match: GBD02165.1 (Single-stranded DNA-binding protein [bacterium HR18])

HSP 1 Score: 86.7 bits (213), Expect = 1.500e-13
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 0
Query:  107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRVKRVEVLQTARTQMP 224
            IN+V+LVGNLG +P V+Y  SG  V ++ LA N+     A R  EG      +W  + AWG++AE  +   RKGSK++V G L T SW D+ G  R   +++++ + +L      +P
Sbjct:    5 INKVILVGNLGQDPEVRYTPSGTAVCNMRLATNE-----AYRDPEGNLVERTEWHNLVAWGRLAEICSQYLRKGSKIYVEGSLQTRSWEDREGNTRYTTEIKIREMVMLDGRGEAIP 116          
BLAST of NO18G01450 vs. NCBI_GenBank
Match: WP_075348687.1 (single-stranded DNA-binding protein [Algoriphagus marinus])

HSP 1 Score: 85.1 bits (209), Expect = 4.400e-13
Identity = 40/103 (38.83%), Postives = 65/103 (63.11%), Query Frame = 0
Query:  107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRV 210
            +N+V+LVGNLG++P VKYL+  N V ++SLA  +     A +   G    + +W  +E WG+ A+      +KGS+++V GK+ ++ W D+ GQNR  +K+RV
Sbjct:    4 VNKVILVGNLGADPEVKYLEGDNVVANLSLATTE-----AYKDRSGNRVEQTEWHDLELWGQQAKIAEQYLKKGSQIYVEGKIKSDKWTDEQGQNRKRMKIRV 101          
BLAST of NO18G01450 vs. NCBI_GenBank
Match: WP_074225802.1 (single-stranded DNA-binding protein [Algoriphagus halophilus] >SIO03485.1 single-strand binding protein [Algoriphagus halophilus])

HSP 1 Score: 84.7 bits (208), Expect = 5.700e-13
Identity = 40/103 (38.83%), Postives = 65/103 (63.11%), Query Frame = 0
Query:  107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRV 210
            +N+V+LVGNLG++P VKYL+  N V +ISLA  +     A +   G    + +W  +E WG+ A+      +KGS+++V GK+ ++ W D+ GQNR  +++RV
Sbjct:    4 VNKVILVGNLGADPEVKYLEGDNVVANISLATTE-----AYKDRNGNRVEQTEWHDLELWGQQAKIAEQYLKKGSQIYVEGKIKSDKWTDEQGQNRKKVRIRV 101          
BLAST of NO18G01450 vs. NCBI_GenBank
Match: WP_057937108.1 (single-stranded DNA-binding protein [Algoriphagus resistens])

HSP 1 Score: 83.6 bits (205), Expect = 1.300e-12
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 0
Query:  107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRV 210
            +N+V+LVGNLG++P VKYL+  N V ++SLA  +     A +   G    + +W  +E WG  A+      +KGS+++V GK+ T+ W D+ GQNR   K+RV
Sbjct:    4 VNKVILVGNLGADPEVKYLEGDNAVANVSLATTE-----AYKNRNGERVEQTEWHDLEMWGAQAKIAEQYLKKGSQIYVEGKIKTDKWQDEQGQNRYRTKIRV 101          
BLAST of NO18G01450 vs. NCBI_GenBank
Match: XP_003062879.1 (predicted protein, partial [Micromonas pusilla CCMP1545] >EEH52818.1 predicted protein, partial [Micromonas pusilla CCMP1545])

HSP 1 Score: 83.2 bits (204), Expect = 1.700e-12
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0
Query:  108 NQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPT----AVRGVEGGGTNEVD--WIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDK-YGQNRSDLKV 208
            N V L+GN G +P +   +SGNCV  +++AV  + P         G+ GGG +E D  W+ VEAW      LA    KG ++ V G++ TN+WVDK  GQNRS +K+
Sbjct:    3 NTVTLIGNAGMDPEIVTFESGNCVARVNIAVRGKKPMADDGFGGPGMGGGGDDESDTHWLEVEAWNDAGRQLADHVTKGRQIRVTGRIKTNTWVDKATGQNRSKVKI 109          
BLAST of NO18G01450 vs. NCBI_GenBank
Match: WP_086500768.1 (single-stranded DNA-binding protein [Algoriphagus ratkowskyi])

HSP 1 Score: 83.2 bits (204), Expect = 1.700e-12
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 0
Query:  107 INQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRV 210
            +N+V+LVGNLGS+P +KYL+  N V + S+A  +     A +   G    + +W  +E WG  A+      +KGS+++V GKL T+ W D+ GQNR   K+RV
Sbjct:    4 VNKVILVGNLGSDPEIKYLEGDNAVANFSIATTE-----AYKNRNGERVEQTEWHDLEMWGAQAKIAEQYLKKGSQIYVEGKLKTDKWQDEQGQNRYRTKIRV 101          
The following BLAST results are available for this feature:
BLAST of NO18G01450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23373.11.400e-3868.38single-stranded dna-binding protein [Nannochlorops... [more]
CBN77565.11.400e-1439.66conserved unknown protein [Ectocarpus siliculosus][more]
OGC00617.13.000e-1438.14hypothetical protein A2V82_01805 [candidate divisi... [more]
EJK63431.16.700e-1440.35hypothetical protein THAOC_15908 [Thalassiosira oc... [more]
GBD02165.11.500e-1337.61Single-stranded DNA-binding protein [bacterium HR1... [more]
WP_075348687.14.400e-1338.83single-stranded DNA-binding protein [Algoriphagus ... [more]
WP_074225802.15.700e-1338.83single-stranded DNA-binding protein [Algoriphagus ... [more]
WP_057937108.11.300e-1239.81single-stranded DNA-binding protein [Algoriphagus ... [more]
XP_003062879.11.700e-1241.12predicted protein, partial [Micromonas pusilla CCM... [more]
WP_086500768.11.700e-1239.81single-stranded DNA-binding protein [Algoriphagus ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004001NSK004001Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01450.1NO18G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608020gene_9075Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g16gene7098Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01450.1NO18G01450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01450 ID=NO18G01450|Name=NO18G01450|organism=Nannochloropsis oceanica|type=gene|length=1343bp
ATGGTCTCTCCTCGGCAGCAGCAACCCACGGCACGCAGCACCACTCGTCG
GCCAACAGCAACTGTAACAACAACAACAGCAACATGCCTTCTTTTCTTAG
gtatgtaccaagcgggctggcgaagggcgccgctgaaggtgggaaggata
gaaagattgacaggttggtagaaggggtagagtggtctgggggaatattg
cgaggagagggcctggacgcactcggtctcgtgccacccctaccatgaaa
tacaagcgtcgatgcttcagaaagagtaatggatggctggaatcgggaac
ctcttccctcaaagcacactgacaggaggaggagggtgccatttcccccc
taggtccgtcgtgctcggtaatggcgttccctccctcctcctcctgtatg
cacgtcctattcagcacccactcatccaccccttcctcttttcatctttc
aaccagcagTTGCAACGACCTCCCCTGTCGCTGAAGCCTTCGTCCTTCCC
GCATTTTCGTCCTCCACTTCCTCCACTTCCTCGCACAAAAGTCCAGCAGC
CGTCCTTTCTTTTATGTCCATTCGTCCTTTCCCCCGGGTTTTATCATCCC
CAGTATCCATTCTTTGGAGTACAATAAGAATGGAAGAAGGCAGTGAAGGA
GGAGGAGGGGGAGGGGGATTCTCTGTGATAAATCAAGTGATGCTTGTCGG
GAACCTAGGCAGTGAGCCAGCAGTCAAGTATCTTGACAGTGGGAATTGTG
TCTTATCGATCTCGCTGGCTGTGAATAAGGAGCTGCCACCTACGGCTGTG
AGAGGGGTTGAGGGTGGAGGAACAAATGAGGTGGATTGGATCAGAGTGGA
AGCGTGGGGGAAGATAGCTGAGAACCTAGCAGCAGGGGCGAGGAAAGGAT
CGAAGGTATGGGTGGTTGGTAAGCTGGTCACCAATAGCTGGGTGGATAAA
TACGGACAAAATAGGAGTGATTTAAAGGTACGAGTTAAGAGGGTGGAGGT
ACTTCAGACGGCCAGAACACAGATGCCAGCGCAGCAGATGGGAGGGGGAG
GTTACTATCAACAGCAGCAGCAGCAGCAGCAGCAGTGGGACGGGCAGCAG
GAGGATGAGCCGATGGTGATGGAGGGAAATATACGAGGGGCGCAACAGCA
GCTACTGCCGCAGCAGCAGCTGCTGCAGCAGTATGGTAGGAACCAGGTCC
CGGTGGCGGTACCTCCTGTGACTCCCCCTTACAGAAAGAAGTCGACATAT
GGCAATGACGGAGGAGGTGGTGGAGGAGAAAGAGAAGGAAGGGAGCAGTA
TAATGTGGAATCGTACGATGTGGACACTGACATCCCCTTTTAA
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protein sequence of NO18G01450.1

>NO18G01450.1-protein ID=NO18G01450.1-protein|Name=NO18G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MVSPRQQQPTARSTTRRPTATVTTTTATCLLFLVATTSPVAEAFVLPAFS
SSTSSTSSHKSPAAVLSFMSIRPFPRVLSSPVSILWSTIRMEEGSEGGGG
GGGFSVINQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGV
EGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQ
NRSDLKVRVKRVEVLQTARTQMPAQQMGGGGYYQQQQQQQQQWDGQQEDE
PMVMEGNIRGAQQQLLPQQQLLQQYGRNQVPVAVPPVTPPYRKKSTYGND
GGGGGGEREGREQYNVESYDVDTDIPF*
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Synonyms
Publications