NO18G01450.1, NO18G01450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01450.1
Unique NameNO18G01450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length984
Alignment locationchr18:478687..480029 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:478687..480029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01450.1 vs.
Match: EWM23373.1 (single-stranded dna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 206.5 bits (524), Expect = 1.300e-49
Identity = 122/242 (50.41%), Postives = 155/242 (64.05%), Query Frame = 0 
Query:   91 MEEGSEGGGGGGGFSVINQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRVKRVEVLQTARTQMPAQQMGGGGYYQQQQQQQQQWDGQQEDE-----PMVMEGNIRGAQQQLLPQQQLLQQYGRNQVPVAVPPVTPPYRKKSTYGNDGGGGGGEREGREQYNVESYDVDTDIPF 328
            M+  + G G G   S++NQVMLVG LGSEPAVKYL+SGNCVLSIS+AVN+E  P            EVDWIR+EAWG+ AE +AA ARKGS+VWVVG+LVTNSWVD+YGQNR++LKVR++R+EVLQ+ R+Q   Q   GG YYQQ      +  G +E++     P  +   + G Q+Q          Y RN    A  PV  P+ KK +YG+ GG GGG      Q+ V+ Y+ DTDIPF
Sbjct:  105 MDMDAGGPGAGSDLSILNQVMLVGRLGSEPAVKYLESGNCVLSISMAVNRETSPGRQNMEAVPKAPEVDWIRLEAWGRTAEGMAANARKGSRVWVVGRLVTNSWVDRYGQNRNELKVRIRRIEVLQSGRSQ--TQPPMGGEYYQQGGGWDGKGAGSREEQSSMVMPDYLASGMDGGQEQ--------SPYSRNGAG-APSPVASPFTKKGSYGHGGGTGGG-----GQFEVDEYEADTDIPF 330
The following BLAST results are available for this feature:
BLAST of NO18G01450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23373.11.300e-4950.41single-stranded dna-binding protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01450NO18G01450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01450.1NO18G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01450.1.cds1NO18G01450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01450.1.cds2NO18G01450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01450.1 ID=NO18G01450.1|Name=NO18G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=984bp
ATGGTCTCTCCTCGGCAGCAGCAACCCACGGCACGCAGCACCACTCGTCG
GCCAACAGCAACTGTAACAACAACAACAGCAACATGCCTTCTTTTCTTAG
TTGCAACGACCTCCCCTGTCGCTGAAGCCTTCGTCCTTCCCGCATTTTCG
TCCTCCACTTCCTCCACTTCCTCGCACAAAAGTCCAGCAGCCGTCCTTTC
TTTTATGTCCATTCGTCCTTTCCCCCGGGTTTTATCATCCCCAGTATCCA
TTCTTTGGAGTACAATAAGAATGGAAGAAGGCAGTGAAGGAGGAGGAGGG
GGAGGGGGATTCTCTGTGATAAATCAAGTGATGCTTGTCGGGAACCTAGG
CAGTGAGCCAGCAGTCAAGTATCTTGACAGTGGGAATTGTGTCTTATCGA
TCTCGCTGGCTGTGAATAAGGAGCTGCCACCTACGGCTGTGAGAGGGGTT
GAGGGTGGAGGAACAAATGAGGTGGATTGGATCAGAGTGGAAGCGTGGGG
GAAGATAGCTGAGAACCTAGCAGCAGGGGCGAGGAAAGGATCGAAGGTAT
GGGTGGTTGGTAAGCTGGTCACCAATAGCTGGGTGGATAAATACGGACAA
AATAGGAGTGATTTAAAGGTACGAGTTAAGAGGGTGGAGGTACTTCAGAC
GGCCAGAACACAGATGCCAGCGCAGCAGATGGGAGGGGGAGGTTACTATC
AACAGCAGCAGCAGCAGCAGCAGCAGTGGGACGGGCAGCAGGAGGATGAG
CCGATGGTGATGGAGGGAAATATACGAGGGGCGCAACAGCAGCTACTGCC
GCAGCAGCAGCTGCTGCAGCAGTATGGTAGGAACCAGGTCCCGGTGGCGG
TACCTCCTGTGACTCCCCCTTACAGAAAGAAGTCGACATATGGCAATGAC
GGAGGAGGTGGTGGAGGAGAAAGAGAAGGAAGGGAGCAGTATAATGTGGA
ATCGTACGATGTGGACACTGACATCCCCTTTTAA
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protein sequence of NO18G01450.1

>NO18G01450.1-protein ID=NO18G01450.1-protein|Name=NO18G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MVSPRQQQPTARSTTRRPTATVTTTTATCLLFLVATTSPVAEAFVLPAFS
SSTSSTSSHKSPAAVLSFMSIRPFPRVLSSPVSILWSTIRMEEGSEGGGG
GGGFSVINQVMLVGNLGSEPAVKYLDSGNCVLSISLAVNKELPPTAVRGV
EGGGTNEVDWIRVEAWGKIAENLAAGARKGSKVWVVGKLVTNSWVDKYGQ
NRSDLKVRVKRVEVLQTARTQMPAQQMGGGGYYQQQQQQQQQWDGQQEDE
PMVMEGNIRGAQQQLLPQQQLLQQYGRNQVPVAVPPVTPPYRKKSTYGND
GGGGGGEREGREQYNVESYDVDTDIPF*
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mRNA from alignment at chr18:478687..480029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01450.1 ID=NO18G01450.1|Name=NO18G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1343bp|location=Sequence derived from alignment at chr18:478687..480029- (Nannochloropsis oceanica)
ATGGTCTCTCCTCGGCAGCAGCAACCCACGGCACGCAGCACCACTCGTCG
GCCAACAGCAACTGTAACAACAACAACAGCAACATGCCTTCTTTTCTTAG
GTATGTACCAAGCGGGCTGGCGAAGGGCGCCGCTGAAGGTGGGAAGGATA
GAAAGATTGACAGGTTGGTAGAAGGGGTAGAGTGGTCTGGGGGAATATTG
CGAGGAGAGGGCCTGGACGCACTCGGTCTCGTGCCACCCCTACCATGAAA
TACAAGCGTCGATGCTTCAGAAAGAGTAATGGATGGCTGGAATCGGGAAC
CTCTTCCCTCAAAGCACACTGACAGGAGGAGGAGGGTGCCATTTCCCCCC
TAGGTCCGTCGTGCTCGGTAATGGCGTTCCCTCCCTCCTCCTCCTGTATG
CACGTCCTATTCAGCACCCACTCATCCACCCCTTCCTCTTTTCATCTTTC
AACCAGCAGTTGCAACGACCTCCCCTGTCGCTGAAGCCTTCGTCCTTCCC
GCATTTTCGTCCTCCACTTCCTCCACTTCCTCGCACAAAAGTCCAGCAGC
CGTCCTTTCTTTTATGTCCATTCGTCCTTTCCCCCGGGTTTTATCATCCC
CAGTATCCATTCTTTGGAGTACAATAAGAATGGAAGAAGGCAGTGAAGGA
GGAGGAGGGGGAGGGGGATTCTCTGTGATAAATCAAGTGATGCTTGTCGG
GAACCTAGGCAGTGAGCCAGCAGTCAAGTATCTTGACAGTGGGAATTGTG
TCTTATCGATCTCGCTGGCTGTGAATAAGGAGCTGCCACCTACGGCTGTG
AGAGGGGTTGAGGGTGGAGGAACAAATGAGGTGGATTGGATCAGAGTGGA
AGCGTGGGGGAAGATAGCTGAGAACCTAGCAGCAGGGGCGAGGAAAGGAT
CGAAGGTATGGGTGGTTGGTAAGCTGGTCACCAATAGCTGGGTGGATAAA
TACGGACAAAATAGGAGTGATTTAAAGGTACGAGTTAAGAGGGTGGAGGT
ACTTCAGACGGCCAGAACACAGATGCCAGCGCAGCAGATGGGAGGGGGAG
GTTACTATCAACAGCAGCAGCAGCAGCAGCAGCAGTGGGACGGGCAGCAG
GAGGATGAGCCGATGGTGATGGAGGGAAATATACGAGGGGCGCAACAGCA
GCTACTGCCGCAGCAGCAGCTGCTGCAGCAGTATGGTAGGAACCAGGTCC
CGGTGGCGGTACCTCCTGTGACTCCCCCTTACAGAAAGAAGTCGACATAT
GGCAATGACGGAGGAGGTGGTGGAGGAGAAAGAGAAGGAAGGGAGCAGTA
TAATGTGGAATCGTACGATGTGGACACTGACATCCCCTTTTAA
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Coding sequence (CDS) from alignment at chr18:478687..480029-

>NO18G01450.1 ID=NO18G01450.1|Name=NO18G01450.1|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr18:478687..480029- (Nannochloropsis oceanica)
ATGGTCTCTCCTCGGCAGCAGCAACCCACGGCACGCAGCACCACTCGTCG
GCCAACAGCAACTGTAACAACAACAACAGCAACATGCCTTCTTTTCTTAG
TTGCAACGACCTCCCCTGTCGCTGAAGCCTTCGTCCTTCCCGCATTTTCG
TCCTCCACTTCCTCCACTTCCTCGCACAAAAGTCCAGCAGCCGTCCTTTC
TTTTATGTCCATTCGTCCTTTCCCCCGGGTTTTATCATCCCCAGTATCCA
TTCTTTGGAGTACAATAAGAATGGAAGAAGGCAGTGAAGGAGGAGGAGGG
GGAGGGGGATTCTCTGTGATAAATCAAGTGATGCTTGTCGGGAACCTAGG
CAGTGAGCCAGCAGTCAAGTATCTTGACAGTGGGAATTGTGTCTTATCGA
TCTCGCTGGCTGTGAATAAGGAGCTGCCACCTACGGCTGTGAGAGGGGTT
GAGGGTGGAGGAACAAATGAGGTGGATTGGATCAGAGTGGAAGCGTGGGG
GAAGATAGCTGAGAACCTAGCAGCAGGGGCGAGGAAAGGATCGAAGGTAT
GGGTGGTTGGTAAGCTGGTCACCAATAGCTGGGTGGATAAATACGGACAA
AATAGGAGTGATTTAAAGGTACGAGTTAAGAGGGTGGAGGTACTTCAGAC
GGCCAGAACACAGATGCCAGCGCAGCAGATGGGAGGGGGAGGTTACTATC
AACAGCAGCAGCAGCAGCAGCAGCAGTGGGACGGGCAGCAGGAGGATGAG
CCGATGGTGATGGAGGGAAATATACGAGGGGCGCAACAGCAGCTACTGCC
GCAGCAGCAGCTGCTGCAGCAGTATGGTAGGAACCAGGTCCCGGTGGCGG
TACCTCCTGTGACTCCCCCTTACAGAAAGAAGTCGACATATGGCAATGAC
GGAGGAGGTGGTGGAGGAGAAAGAGAAGGAAGGGAGCAGTATAATGTGGA
ATCGTACGATGTGGACACTGACATCCCCTTTTAA
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Synonyms
Publications