NO18G01420, NO18G01420 (gene) Nannochloropsis oceanica

Overview
NameNO18G01420
Unique NameNO18G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3865
Alignment locationchr18:471959..475823 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:471959..475823 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G01420 vs. NCBI_GenBank
Match: EWM23349.1 (hypothetical protein Naga_100057g14 [Nannochloropsis gaditana])

HSP 1 Score: 106.7 bits (265), Expect = 6.900e-20
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 0 
Query:    1 MKTSLAFLFIAGVAQGYVPTPITCPVGRISQRMTRFAPSHRTWSSMSMVMTARKDA-EKIPFHAFTSLVLKGGMMASAVFGGSFAVDMGGSSSGLLAPVQAAVVNLPRCEGGLGEGCAAMGEGEGELVKKLQERSAKNYVCTEPRVVIE 149
            M+  +  LF+ G  Q +VP            R+ + +P+ R+   +     A K +   I   A    +LKGGM+  A+FGGSF   +  S++G++APV AAV+N+PRCEGGLG+GCAAMGEG  E VKKLQERSAKNY  ++ + +I+
Sbjct:   20 MRAVVLLLFMMGPVQAFVP------------RIPKQSPTSRSEILIDDATAAAKSSTTPIIVRAIADSMLKGGMLVGAIFGGSFMAGL-SSTTGIMAPVHAAVINMPRCEGGLGDGCAAMGEG-NEFVKKLQERSAKNYESSKKQKLIK 154
The following BLAST results are available for this feature:
BLAST of NO18G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23349.16.900e-2042.95hypothetical protein Naga_100057g14 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003999NSK003999Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01420.1NO18G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO18G01420.2NO18G01420.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO18G01420.3NO18G01420.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608010gene_9071Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g14gene7100Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01420.1NO18G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO18G01420.2NO18G01420.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO18G01420.3NO18G01420.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01420 ID=NO18G01420|Name=NO18G01420|organism=Nannochloropsis oceanica|type=gene|length=3865bp
CCTGCGGAGATGAATAACAAATCGGCGCTGAAAGCCTTGAGCTTCGGCAG
CAACAACCTTTCCACCTTGTCCCTGAACTCTTCACTCGCCTTTCTGCAGA
ACTCCCTCACTTTTTTGGGGCCTAGCCCTTTCGCCTTGGTCGACCCTGCT
GTTGCTGTTGGCGGCCTGACGGGGGAGAGCTCCACGTTGATTATGTTCGG
GTATGAGACCTCGTCATTCTCGACTTCTCGCCCCGAACAAGGGTAGAAAT
GCGGGCCGTCCACCAGGTTGATGCTCCCGAAGAAGACGTTGTCGGCATCC
TCTGCCTCGGACAGCCAGGGCTTGAACAGTTCGTAGGTCTGGGGTGCCCA
GGAGGCAGGGAGGGGGAGAGCTAGTCGCGAGGGTTTCAGTGCTCTTACAC
AGGCTTCCGTTCCATTTCCGTGGTGAATGTCAAAATCGATGATGGCGACT
CGAGCGAAGGGCCCGGAGGGGGGACGGCCATAGGTTTGCCTAGCATATGC
CGCGCCGACCGCCACGTTATTGATCAAACAAAATCCCGAGGAGCAGGAGG
AGGGGGACTTCCAAAAGCAGTGGCTAGGCACAGCGCCTCGAGGACCGGCG
TGGTGGCCCGGAGGACGGGTAGCAACAAAAATACGTTTGCGACCAGCGGC
TGCTTGATCGACGGCTTGAATGACGGCCCCGGCAGCAACGCACGCCACTT
GAAAGGATTCGCGACAAACACGCGTGTCAGAGTCTAAGAACTGAGAGACA
ATGCCCTTGCCATCCTCGTCTTGAGGAAGACTTCCCGCCCGCTCCTTCTT
GTCAAAAGCTTCACCGCTGCGGTCCTCCGGGCCTTGCCTTCGCCCGTACT
GCTGCTGCTCCTGGGTAGGAGGGTGCCCTCCTTCCTCGCCCCCGCCTTCC
TCCTCATCCTCCTCTCTGACCTCCGCCAGCGCTTTCAACAAATGCACGGG
AAAGTCACGGATAGACGTGTGGTGCCGCACGCTTAGAGGCGCCCGCCTGC
TGCTGTTGCTGCTGCTGCTGCTGCCGTTGCCGCTACAGCTACCTTTCATA
TTGCTGCTGGCGTTGTAGGCAGAACCCTCTCTGGTAGAATTTTTCTCACC
ATCTGCAGGGGAGGGTGCCTCAGAGGAAGAGGGAGAAAGGGAGTTCGGGG
AAGCCAAGGAAGAGGGCCGCAGCAGCTCCGCCGGAGGTTGGGCGGGGGAA
TGCCGGGGCTGGAAGAGGGCGGGCAAGGTGGCGAGGAGAGAAGAAGAATC
TCCTTCCACTCCTTCTCCTCCCTGCTTTTCCTGGCAGCAAGGGGTGGGCG
GCAACGAGTTGCAAATGTTTTGCAAATGCCGGATGTAATCATACTCATGT
ACACGAAGCAAGTCCGAGGTGGTAGCAGGAGCGAAATTCGTTCCATCTGC
CCATTCCAGGTTCGCAAACCGCTTCCGTCTCAAAACCCCTTTATGCGGGT
CCACCAAGCATACTAATCGATCCACACTCTCTTGATGATTTAGCGTCTCA
TGTTGGAGGCAGACAGGAGGATAAATGACGAGCATGCGAGTCGACATGGC
GGCACTCATCACCTCCTGCGACGGCGGTGGGGGAGGAAAAGCCGCTCCTC
CAAAAGAATACAAGGCTGATTCCCCCGGAGATTGCGGAGGTATGCTCTGT
TTGAGGGCCCGAATACCCATGGGGGTGTCGTTCCCGTTACTTTTTTTGGT
TGAGGGAAGAGTAGTGGAAAAAGCGCAGTTGAGCATGCTTCCTGGTTGGC
CTTCGCCTTCCAGCTGCATCTCGACTGAATTAACGGAGCACAGGCGACTT
ATACTAGGCGAAGACAGCTCCCGTTTGTGCATGCCGGGAGGGTGGAAGGA
AGGCGGTGGAGGGGGCACTACTGTTGTCAACAATGGCGGAGGCGGGGCCG
TGGAAGAAGAGGACGAGGACGAAGAAATCTGATTCTCCTGTTGCAGCTGT
TGCAGACTCACTTGGCGATGAAACTGCTCACTCAAGAAGTCCTCCGACTC
TTGGCTGGGAGCGACGCTGTCGTAATAGGGCGGAGAAGCCATGCTGGCGC
TGCTGCTGGCTCCACTGCTGCTGGCTCCACTGCTGCGCCGGCTGCTGCTC
CCGTCAACATCTCCTTTCTCCTCGTCGGGAGGCGGCGAAAGGCTATTTGT
GTTGCGTCGAGTCGTCCGCCGAGCCGCCATTTAAGTACTAATCGATGCCG
ATGGTATGTTGGTGCTTATGCGTGTCGCTGATGTGGATGGGTGCGCTTGG
AAGCGTAAGAATGGTACGGGGGCTCCCCAATATATTATGCATCTCGGGAG
TTTATAACGAAGCTTCTTTGCGCCTCCTCCTACCTGCATCCAACTTTCAT
CATCACTTTTTGCTCCTCAATCCCACCGCAGTACAAGACAGGCCGAACAA
TGAAGACGTCTTTGGCCTTCCTGTTCATTGCTGGTGTTGCTCAAGgtacg
ttgctatattagagttgcactatgcttagcaaggcgtcggggttggacat
cagacagcgatggcacgacgccgtattctatatccaccttctcacaccac
acactcgacagGGTACGTCCCCACACCCATTACATGCCCGGTTGGGAGGA
TTTCCCAGCGCATGACGCGGTTCGCTCCAAGCCACAGAACTTGGAGCAGC
ATGAGCATGGTGATGACGGCACGAAAGGATGCGGAGAAAATGTCAGTAGG
CCGCTTTCCCAGCATGATATATACAATTGGTGAGCCTTAATTTAAGGTTA
TATTTCTCGCTCCACCATGTCCTTTCCTCCCAGACCTTTCCATGCATTCA
CATCCCTGGTACTCAAGGGCGGCATGATGGCGAGTGCTGTCTTTGGCGGT
AGCTTTGCAGTGGACATGGGGGGCAGCAGCAGCGGATTATTAGCACCTGg
tacgttgtataggggtggtagtaggattatcgtttgtacgcgtgtttgag
taatgtgccgcctccagcatcccctcttccaggcttctcgttctccacgc
cgcatgactcacttcttttcttaggcatcagctaaatctcaatatgagga
gctaacattctttgtatcttttgcatataatataatctaccagTGCAAGC
CGCAGTGGTCAATTTGCCTCGTTGCGAAGGCGGGCTGGGCGAAGGGTGCG
CAGCCATGGGGGAAGGGGAGGGCGAGCTCGTGAAGAAGCTCCAGGAGCGG
TCGGCAAAGAACTATgtatgtacagagccgagagtagtgattgaaaatca
acgatcgtctgctgcatataaatgttgtggctagacgtatgcaggttttt
aatctacacgaattcggggggggggcttgaatgacaagtgtgagactgag
agacgacaaggttgcatggattagtataatcacacgttcccttcctccct
cccttcctactgctcaattaaagGAGTCTAGCAAGAAGCAAAAGTTGATA
AAATACAACCTCAATAACTTCAAGGACTACTTCGCGGTCAAGAACCAAAA
GCTCGTGGTCAAGTCTGACGGGAAATTCATCGCCATTGACAACAAAGTCT
ACAAGCAGCTAGAGAAGGAGGGCAAAGTGGAAGGAAACTACTGGGTGTCG
AAGGAGTCTCCACCGGCAGATGGTACGGTTGACTTTATTCCGGCAGGAAG
TAGGAATGACGGGCCGACGCCTGACTTTTCGACGAACTAAGGAACATGGG
GAGGATGAATTTTGGCGTGCAAGGCAGTGAAGCAGTGTTGTTTCTGAGTT
TCTAGCTTGGAATTAGATAGCAACAAAAGAAATCAATATGAAGGGCGAAT
GAGAATGTGAAAAATAGGGTACGGAAATTGCTGCGACGTCTTCCTTGGTT
TTCCTCTTCGCAGGT
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protein sequence of NO18G01420.1

>NO18G01420.1-protein ID=NO18G01420.1-protein|Name=NO18G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MKTSLAFLFIAGVAQGYVPTPITCPVGRISQRMTRFAPSHRTWSSMSMVM
TARKDAEKIPFHAFTSLVLKGGMMASAVFGGSFAVDMGGSSSGLLAPVQA
AVVNLPRCEGGLGEGCAAMGEGEGELVKKLQERSAKNYESSKKQKLIKYN
LNNFKDYFAVKNQKLVVKSDGKFIAIDNKVYKQLEKEGKVEGNYWVSKES
PPADGTVDFIPAGSRNDGPTPDFSTN*
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protein sequence of NO18G01420.2

>NO18G01420.2-protein ID=NO18G01420.2-protein|Name=NO18G01420.2|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MKTSLAFLFIAGVAQGYVPTPITCPVGRISQRMTRFAPSHRTWSSMSMVM
TARKDAEKIPFHAFTSLVLKGGMMASAVFGGSFAVDMGGSSSGLLAPVQA
AVVNLPRCEGGLGEGCAAMGEGEGELVKKLQERSAKNYVCTEPRVVIENQ
RSSAAYKCCG*
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protein sequence of NO18G01420.3

>NO18G01420.3-protein ID=NO18G01420.3-protein|Name=NO18G01420.3|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MSFPPRPFHAFTSLVLKGGMMASAVFGGSFAVDMGGSSSGLLAPVQAAVV
NLPRCEGGLGEGCAAMGEGEGELVKKLQERSAKNYESSKKQKLIKYNLNN
FKDYFAVKNQKLVVKSDGKFIAIDNKVYKQLEKEGKVEGNYWVSKESPPA
DGTVDFIPAGSRNDGPTPDFSTN*
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Synonyms
Publications