NO18G01420.3, NO18G01420.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G01420.3
Unique Name	NO18G01420.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3347
Alignment location	chr18:471959..475823 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:471959..475823 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G01420.3 vs.
Match: EWM23349.1 (hypothetical protein Naga_100057g14 [Nannochloropsis gaditana])

HSP 1 Score: 252.7 bits (644), Expect = 8.400e-64
Identity = 127/170 (74.71%), Postives = 144/170 (84.71%), Query Frame = 0

Query:    2 SFPPRPFHAFTSLVLKGGMMASAVFGGSFAVDMGGSSSGLLAPVQAAVVNLPRCEGGLGEGCAAMGEGEGELVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKSDGKFIAIDNKVYKQLEKEGKVEGNYWVSKESPPADGTVDFIPAGSRNDGPTPDFS 172
            S  P    A    +LKGGM+  A+FGGSF   +  S++G++APV AAV+N+PRCEGGLG+GCAAMGEG  E VKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVK DGKFIAIDNK+YKQLEKEGKV+GNYW+SKE PP+DGTVDFIP GS+ND P PDF+
Sbjct:   63 STTPIIVRAIADSMLKGGMLVGAIFGGSFMAGLS-STTGIMAPVHAAVINMPRCEGGLGDGCAAMGEGN-EFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKVDGNYWISKEDPPSDGTVDFIPGGSKNDAPAPDFT 230

The following BLAST results are available for this feature:

BLAST of NO18G01420.3 vs.

BLAST of NO18G01420.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23349.1	8.400e-64	74.71	hypothetical protein Naga_100057g14 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G01420	NO18G01420	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01420.3	NO18G01420.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01420.3.cds1	NO18G01420.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G01420.3.cds2	NO18G01420.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G01420.3.cds3	NO18G01420.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:471959..475823+
coding sequence from alignment at chr18:471959..475823+

mRNA sequence

>NO18G01420.3 ID=NO18G01420.3|Name=NO18G01420.3|organism=Nannochloropsis oceanica|type=mRNA|length=3347bp
CCTGCGGAGATGAATAACAAATCGGCGCTGAAAGCCTTGAGCTTCGGCAG
CAACAACCTTTCCACCTTGTCCCTGAACTCTTCACTCGCCTTTCTGCAGA
ACTCCCTCACTTTTTTGGGGCCTAGCCCTTTCGCCTTGGTCGACCCTGCT
GTTGCTGTTGGCGGCCTGACGGGGGAGAGCTCCACGTTGATTATGTTCGG
GTATGAGACCTCGTCATTCTCGACTTCTCGCCCCGAACAAGGGTAGAAAT
GCGGGCCGTCCACCAGGTTGATGCTCCCGAAGAAGACGTTGTCGGCATCC
TCTGCCTCGGACAGCCAGGGCTTGAACAGTTCGTAGGTCTGGGGTGCCCA
GGAGGCAGGGAGGGGGAGAGCTAGTCGCGAGGGTTTCAGTGCTCTTACAC
AGGCTTCCGTTCCATTTCCGTGGTGAATGTCAAAATCGATGATGGCGACT
CGAGCGAAGGGCCCGGAGGGGGGACGGCCATAGGTTTGCCTAGCATATGC
CGCGCCGACCGCCACGTTATTGATCAAACAAAATCCCGAGGAGCAGGAGG
AGGGGGACTTCCAAAAGCAGTGGCTAGGCACAGCGCCTCGAGGACCGGCG
TGGTGGCCCGGAGGACGGGTAGCAACAAAAATACGTTTGCGACCAGCGGC
TGCTTGATCGACGGCTTGAATGACGGCCCCGGCAGCAACGCACGCCACTT
GAAAGGATTCGCGACAAACACGCGTGTCAGAGTCTAAGAACTGAGAGACA
ATGCCCTTGCCATCCTCGTCTTGAGGAAGACTTCCCGCCCGCTCCTTCTT
GTCAAAAGCTTCACCGCTGCGGTCCTCCGGGCCTTGCCTTCGCCCGTACT
GCTGCTGCTCCTGGGTAGGAGGGTGCCCTCCTTCCTCGCCCCCGCCTTCC
TCCTCATCCTCCTCTCTGACCTCCGCCAGCGCTTTCAACAAATGCACGGG
AAAGTCACGGATAGACGTGTGGTGCCGCACGCTTAGAGGCGCCCGCCTGC
TGCTGTTGCTGCTGCTGCTGCTGCCGTTGCCGCTACAGCTACCTTTCATA
TTGCTGCTGGCGTTGTAGGCAGAACCCTCTCTGGTAGAATTTTTCTCACC
ATCTGCAGGGGAGGGTGCCTCAGAGGAAGAGGGAGAAAGGGAGTTCGGGG
AAGCCAAGGAAGAGGGCCGCAGCAGCTCCGCCGGAGGTTGGGCGGGGGAA
TGCCGGGGCTGGAAGAGGGCGGGCAAGGTGGCGAGGAGAGAAGAAGAATC
TCCTTCCACTCCTTCTCCTCCCTGCTTTTCCTGGCAGCAAGGGGTGGGCG
GCAACGAGTTGCAAATGTTTTGCAAATGCCGGATGTAATCATACTCATGT
ACACGAAGCAAGTCCGAGGTGGTAGCAGGAGCGAAATTCGTTCCATCTGC
CCATTCCAGGTTCGCAAACCGCTTCCGTCTCAAAACCCCTTTATGCGGGT
CCACCAAGCATACTAATCGATCCACACTCTCTTGATGATTTAGCGTCTCA
TGTTGGAGGCAGACAGGAGGATAAATGACGAGCATGCGAGTCGACATGGC
GGCACTCATCACCTCCTGCGACGGCGGTGGGGGAGGAAAAGCCGCTCCTC
CAAAAGAATACAAGGCTGATTCCCCCGGAGATTGCGGAGGTATGCTCTGT
TTGAGGGCCCGAATACCCATGGGGGTGTCGTTCCCGTTACTTTTTTTGGT
TGAGGGAAGAGTAGTGGAAAAAGCGCAGTTGAGCATGCTTCCTGGTTGGC
CTTCGCCTTCCAGCTGCATCTCGACTGAATTAACGGAGCACAGGCGACTT
ATACTAGGCGAAGACAGCTCCCGTTTGTGCATGCCGGGAGGGTGGAAGGA
AGGCGGTGGAGGGGGCACTACTGTTGTCAACAATGGCGGAGGCGGGGCCG
TGGAAGAAGAGGACGAGGACGAAGAAATCTGATTCTCCTGTTGCAGCTGT
TGCAGACTCACTTGGCGATGAAACTGCTCACTCAAGAAGTCCTCCGACTC
TTGGCTGGGAGCGACGCTGTCGTAATAGGGCGGAGAAGCCATGCTGGCGC
TGCTGCTGGCTCCACTGCTGCTGGCTCCACTGCTGCGCCGGCTGCTGCTC
CCGTCAACATCTCCTTTCTCCTCGTCGGGAGGCGGCGAAAGGCTATTTGT
GTTGCGTCGAGTCGTCCGCCGAGCCGCCATTTAAGTACTAATCGATGCCG
ATGGTATGTTGGTGCTTATGCGTGTCGCTGATGTGGATGGGTGCGCTTGG
AAGCGTAAGAATGGTACGGGGGCTCCCCAATATATTATGCATCTCGGGAG
TTTATAACGAAGCTTCTTTGCGCCTCCTCCTACCTGCATCCAACTTTCAT
CATCACTTTTTGCTCCTCAATCCCACCGCAGTACAAGACAGGCCGAACAA
TGAAGACGTCTTTGGCCTTCCTGTTCATTGCTGGTGTTGCTCAAGGGTAC
GTCCCCACACCCATTACATGCCCGGTTGGGAGGATTTCCCAGCGCATGAC
GCGGTTCGCTCCAAGCCACAGAACTTGGAGCAGCATGAGCATGGTGATGA
CGGCACGAAAGGATGCGGAGAAAATGTCAGTAGGCCGCTTTCCCAGCATG
ATATATACAATTGGTGAGCCTTAATTTAAGGTTATATTTCTCGCTCCACC
ATGTCCTTTCCTCCCAGACCTTTCCATGCATTCACATCCCTGGTACTCAA
GGGCGGCATGATGGCGAGTGCTGTCTTTGGCGGTAGCTTTGCAGTGGACA
TGGGGGGCAGCAGCAGCGGATTATTAGCACCTGTGCAAGCCGCAGTGGTC
AATTTGCCTCGTTGCGAAGGCGGGCTGGGCGAAGGGTGCGCAGCCATGGG
GGAAGGGGAGGGCGAGCTCGTGAAGAAGCTCCAGGAGCGGTCGGCAAAGA
ACTATGAGTCTAGCAAGAAGCAAAAGTTGATAAAATACAACCTCAATAAC
TTCAAGGACTACTTCGCGGTCAAGAACCAAAAGCTCGTGGTCAAGTCTGA
CGGGAAATTCATCGCCATTGACAACAAAGTCTACAAGCAGCTAGAGAAGG
AGGGCAAAGTGGAAGGAAACTACTGGGTGTCGAAGGAGTCTCCACCGGCA
GATGGTACGGTTGACTTTATTCCGGCAGGAAGTAGGAATGACGGGCCGAC
GCCTGACTTTTCGACGAACTAAGGAACATGGGGAGGATGAATTTTGGCGT
GCAAGGCAGTGAAGCAGTGTTGTTTCTGAGTTTCTAGCTTGGAATTAGAT
AGCAACAAAAGAAATCAATATGAAGGGCGAATGAGAATGTGAAAAATAGG
GTACGGAAATTGCTGCGACGTCTTCCTTGGTTTTCCTCTTCGCAGGT

protein sequence of NO18G01420.3

>NO18G01420.3-protein ID=NO18G01420.3-protein|Name=NO18G01420.3|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MSFPPRPFHAFTSLVLKGGMMASAVFGGSFAVDMGGSSSGLLAPVQAAVV
NLPRCEGGLGEGCAAMGEGEGELVKKLQERSAKNYESSKKQKLIKYNLNN
FKDYFAVKNQKLVVKSDGKFIAIDNKVYKQLEKEGKVEGNYWVSKESPPA
DGTVDFIPAGSRNDGPTPDFSTN*

mRNA from alignment at chr18:471959..475823+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G01420.3 ID=NO18G01420.3|Name=NO18G01420.3|organism=Nannochloropsis oceanica|type=mRNA|length=3865bp|location=Sequence derived from alignment at chr18:471959..475823+ (Nannochloropsis oceanica)
CCTGCGGAGATGAATAACAAATCGGCGCTGAAAGCCTTGAGCTTCGGCAG
CAACAACCTTTCCACCTTGTCCCTGAACTCTTCACTCGCCTTTCTGCAGA
ACTCCCTCACTTTTTTGGGGCCTAGCCCTTTCGCCTTGGTCGACCCTGCT
GTTGCTGTTGGCGGCCTGACGGGGGAGAGCTCCACGTTGATTATGTTCGG
GTATGAGACCTCGTCATTCTCGACTTCTCGCCCCGAACAAGGGTAGAAAT
GCGGGCCGTCCACCAGGTTGATGCTCCCGAAGAAGACGTTGTCGGCATCC
TCTGCCTCGGACAGCCAGGGCTTGAACAGTTCGTAGGTCTGGGGTGCCCA
GGAGGCAGGGAGGGGGAGAGCTAGTCGCGAGGGTTTCAGTGCTCTTACAC
AGGCTTCCGTTCCATTTCCGTGGTGAATGTCAAAATCGATGATGGCGACT
CGAGCGAAGGGCCCGGAGGGGGGACGGCCATAGGTTTGCCTAGCATATGC
CGCGCCGACCGCCACGTTATTGATCAAACAAAATCCCGAGGAGCAGGAGG
AGGGGGACTTCCAAAAGCAGTGGCTAGGCACAGCGCCTCGAGGACCGGCG
TGGTGGCCCGGAGGACGGGTAGCAACAAAAATACGTTTGCGACCAGCGGC
TGCTTGATCGACGGCTTGAATGACGGCCCCGGCAGCAACGCACGCCACTT
GAAAGGATTCGCGACAAACACGCGTGTCAGAGTCTAAGAACTGAGAGACA
ATGCCCTTGCCATCCTCGTCTTGAGGAAGACTTCCCGCCCGCTCCTTCTT
GTCAAAAGCTTCACCGCTGCGGTCCTCCGGGCCTTGCCTTCGCCCGTACT
GCTGCTGCTCCTGGGTAGGAGGGTGCCCTCCTTCCTCGCCCCCGCCTTCC
TCCTCATCCTCCTCTCTGACCTCCGCCAGCGCTTTCAACAAATGCACGGG
AAAGTCACGGATAGACGTGTGGTGCCGCACGCTTAGAGGCGCCCGCCTGC
TGCTGTTGCTGCTGCTGCTGCTGCCGTTGCCGCTACAGCTACCTTTCATA
TTGCTGCTGGCGTTGTAGGCAGAACCCTCTCTGGTAGAATTTTTCTCACC
ATCTGCAGGGGAGGGTGCCTCAGAGGAAGAGGGAGAAAGGGAGTTCGGGG
AAGCCAAGGAAGAGGGCCGCAGCAGCTCCGCCGGAGGTTGGGCGGGGGAA
TGCCGGGGCTGGAAGAGGGCGGGCAAGGTGGCGAGGAGAGAAGAAGAATC
TCCTTCCACTCCTTCTCCTCCCTGCTTTTCCTGGCAGCAAGGGGTGGGCG
GCAACGAGTTGCAAATGTTTTGCAAATGCCGGATGTAATCATACTCATGT
ACACGAAGCAAGTCCGAGGTGGTAGCAGGAGCGAAATTCGTTCCATCTGC
CCATTCCAGGTTCGCAAACCGCTTCCGTCTCAAAACCCCTTTATGCGGGT
CCACCAAGCATACTAATCGATCCACACTCTCTTGATGATTTAGCGTCTCA
TGTTGGAGGCAGACAGGAGGATAAATGACGAGCATGCGAGTCGACATGGC
GGCACTCATCACCTCCTGCGACGGCGGTGGGGGAGGAAAAGCCGCTCCTC
CAAAAGAATACAAGGCTGATTCCCCCGGAGATTGCGGAGGTATGCTCTGT
TTGAGGGCCCGAATACCCATGGGGGTGTCGTTCCCGTTACTTTTTTTGGT
TGAGGGAAGAGTAGTGGAAAAAGCGCAGTTGAGCATGCTTCCTGGTTGGC
CTTCGCCTTCCAGCTGCATCTCGACTGAATTAACGGAGCACAGGCGACTT
ATACTAGGCGAAGACAGCTCCCGTTTGTGCATGCCGGGAGGGTGGAAGGA
AGGCGGTGGAGGGGGCACTACTGTTGTCAACAATGGCGGAGGCGGGGCCG
TGGAAGAAGAGGACGAGGACGAAGAAATCTGATTCTCCTGTTGCAGCTGT
TGCAGACTCACTTGGCGATGAAACTGCTCACTCAAGAAGTCCTCCGACTC
TTGGCTGGGAGCGACGCTGTCGTAATAGGGCGGAGAAGCCATGCTGGCGC
TGCTGCTGGCTCCACTGCTGCTGGCTCCACTGCTGCGCCGGCTGCTGCTC
CCGTCAACATCTCCTTTCTCCTCGTCGGGAGGCGGCGAAAGGCTATTTGT
GTTGCGTCGAGTCGTCCGCCGAGCCGCCATTTAAGTACTAATCGATGCCG
ATGGTATGTTGGTGCTTATGCGTGTCGCTGATGTGGATGGGTGCGCTTGG
AAGCGTAAGAATGGTACGGGGGCTCCCCAATATATTATGCATCTCGGGAG
TTTATAACGAAGCTTCTTTGCGCCTCCTCCTACCTGCATCCAACTTTCAT
CATCACTTTTTGCTCCTCAATCCCACCGCAGTACAAGACAGGCCGAACAA
TGAAGACGTCTTTGGCCTTCCTGTTCATTGCTGGTGTTGCTCAAGGTACG
TTGCTATATTAGAGTTGCACTATGCTTAGCAAGGCGTCGGGGTTGGACAT
CAGACAGCGATGGCACGACGCCGTATTCTATATCCACCTTCTCACACCAC
ACACTCGACAGGGTACGTCCCCACACCCATTACATGCCCGGTTGGGAGGA
TTTCCCAGCGCATGACGCGGTTCGCTCCAAGCCACAGAACTTGGAGCAGC
ATGAGCATGGTGATGACGGCACGAAAGGATGCGGAGAAAATGTCAGTAGG
CCGCTTTCCCAGCATGATATATACAATTGGTGAGCCTTAATTTAAGGTTA
TATTTCTCGCTCCACCATGTCCTTTCCTCCCAGACCTTTCCATGCATTCA
CATCCCTGGTACTCAAGGGCGGCATGATGGCGAGTGCTGTCTTTGGCGGT
AGCTTTGCAGTGGACATGGGGGGCAGCAGCAGCGGATTATTAGCACCTGG
TACGTTGTATAGGGGTGGTAGTAGGATTATCGTTTGTACGCGTGTTTGAG
TAATGTGCCGCCTCCAGCATCCCCTCTTCCAGGCTTCTCGTTCTCCACGC
CGCATGACTCACTTCTTTTCTTAGGCATCAGCTAAATCTCAATATGAGGA
GCTAACATTCTTTGTATCTTTTGCATATAATATAATCTACCAGTGCAAGC
CGCAGTGGTCAATTTGCCTCGTTGCGAAGGCGGGCTGGGCGAAGGGTGCG
CAGCCATGGGGGAAGGGGAGGGCGAGCTCGTGAAGAAGCTCCAGGAGCGG
TCGGCAAAGAACTATGTATGTACAGAGCCGAGAGTAGTGATTGAAAATCA
ACGATCGTCTGCTGCATATAAATGTTGTGGCTAGACGTATGCAGGTTTTT
AATCTACACGAATTCGGGGGGGGGGCTTGAATGACAAGTGTGAGACTGAG
AGACGACAAGGTTGCATGGATTAGTATAATCACACGTTCCCTTCCTCCCT
CCCTTCCTACTGCTCAATTAAAGGAGTCTAGCAAGAAGCAAAAGTTGATA
AAATACAACCTCAATAACTTCAAGGACTACTTCGCGGTCAAGAACCAAAA
GCTCGTGGTCAAGTCTGACGGGAAATTCATCGCCATTGACAACAAAGTCT
ACAAGCAGCTAGAGAAGGAGGGCAAAGTGGAAGGAAACTACTGGGTGTCG
AAGGAGTCTCCACCGGCAGATGGTACGGTTGACTTTATTCCGGCAGGAAG
TAGGAATGACGGGCCGACGCCTGACTTTTCGACGAACTAAGGAACATGGG
GAGGATGAATTTTGGCGTGCAAGGCAGTGAAGCAGTGTTGTTTCTGAGTT
TCTAGCTTGGAATTAGATAGCAACAAAAGAAATCAATATGAAGGGCGAAT
GAGAATGTGAAAAATAGGGTACGGAAATTGCTGCGACGTCTTCCTTGGTT
TTCCTCTTCGCAGGT

Coding sequence (CDS) from alignment at chr18:471959..475823+

>NO18G01420.3 ID=NO18G01420.3|Name=NO18G01420.3|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at chr18:471959..475823+ (Nannochloropsis oceanica)
ATGTCCTTTCCTCCCAGACCTTTCCATGCATTCACATCCCTGGTACTCAA
GGGCGGCATGATGGCGAGTGCTGTCTTTGGCGGTAGCTTTGCAGTGGACA
TGGGGGGCAGCAGCAGCGGATTATTAGCACCTGTGCAAGCCGCAGTGGTC
AATTTGCCTCGTTGCGAAGGCGGGCTGGGCGAAGGGTGCGCAGCCATGGG
GGAAGGGGAGGGCGAGCTCGTGAAGAAGCTCCAGGAGCGGTCGGCAAAGA
ACTATGAGTCTAGCAAGAAGCAAAAGTTGATAAAATACAACCTCAATAAC
TTCAAGGACTACTTCGCGGTCAAGAACCAAAAGCTCGTGGTCAAGTCTGA
CGGGAAATTCATCGCCATTGACAACAAAGTCTACAAGCAGCTAGAGAAGG
AGGGCAAAGTGGAAGGAAACTACTGGGTGTCGAAGGAGTCTCCACCGGCA
GATGGTACGGTTGACTTTATTCCGGCAGGAAGTAGGAATGACGGGCCGAC
GCCTGACTTTTCGACGAACTAA

Synonyms

Publications