NO18G01390, NO18G01390 (gene) Nannochloropsis oceanica

Overview
NameNO18G01390
Unique NameNO18G01390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1520
Alignment locationchr18:467698..469217 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:467698..469217 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR021894DUF3506
Homology
BLAST of NO18G01390 vs. NCBI_GenBank
Match: EWM23362.1 (hypothetical protein Naga_100057g11 [Nannochloropsis gaditana])

HSP 1 Score: 337.4 bits (864), Expect = 7.000e-89
Identity = 201/465 (43.23%), Postives = 274/465 (58.92%), Query Frame = 0
Query:    5 VPMPSLP-PSVAILSTDLVVFMLQFLGAKDTARMCRISSAFHHLVQANDEALFRPHVLRQRLVSQPIPLTPQQNLAAAHTLRTALAPPGGWKGLYHVTKYLLGVPCLGYFRRVPRDFGTDYKGQLMRLR--PTLEVNVGVEISSNFRPTPGLGLSLEVLTPTGT-SITNGTSFFRLCEQRETAHGLCMKGRTVDQKIEIEWCAHIAV--RGHEDEDDAAGSQNSNEDGQSPCFDMTLHPDEMVDGQTIIIQQCFHALLSEPPSLMLCES-AYCQELEGLRGFWVGTYGSHGQEIIQVRFTTTNKATATTTDDVSTTAGIAVAPVAVPLPVIMEGIKIVGDANVPANEWSFRVDVSTGPLDKARALGADMRPVYTLDSHMQPRPRILSQEAGRIQSVYRGKGQINMVPGIWSPQEVGVDVVVLRPEENEGKGGLWVIWHDVEYTSRHCIDLTRLVETKADEEHHGQ 463
            V  PS P P +  LS D ++ +LQFL   D  R+C +    +  V  +DE LF+ HVL ++LVS P P+T +Q + AA TL+TALA  GGW+GL +VT+++ G PCLGYFR++PRDF +D++G+L R+R   T   ++        R   G GL LE +T + T  +      +R   Q     G C+ G   D +  ++W A +    RG   ED AA +Q         CF+              +      AL    P L L  S    +E E L+G W G YGSHG EIIQVR                 T G A    ++   VI+EG+K+VGDANVPANEW+FR DV+  PLD+A ALGAD RP+Y+L + M P+  +L++EAGRI++VYRGKGQ+NMVPGIW PQEVGVDV++LR EEN G+GG+W++WHD  ++SRHCI+LTRL+E +   E  G+
Sbjct:    4 VTTPSTPRPFLGTLSGDTLLTVLQFLEVADGTRVCLVCPYLNKSVCEHDEVLFKAHVLNEQLVSLPTPVTLKQKVRAAQTLQTALALKGGWRGLSYVTRHVTGRPCLGYFRQIPRDFRSDFRGKLFRVRLEDTEVSDMAWAPEGLPRGREGRGLVLEEVTFSCTHEVVKALRLYRAPGQ----SGSCL-GGVCDGEPLVKWTARVEPKGRGRSREDRAADTQ--------VCFE--------------VFHSRVGALHPLAPCLSLSASGGQLREFEDLQGLWRGVYGSHGWEIIQVRLRRL------------WTDGSAGTSPSIGGRVILEGLKLVGDANVPANEWTFRADVTAPPLDRAEALGADTRPIYSLTTRMVPQSWVLAEEAGRIRAVYRGKGQVNMVPGIWEPQEVGVDVMLLRREENGGRGGIWLLWHDEGFSSRHCIELTRLIEGEEAGEGEGR 429          
BLAST of NO18G01390 vs. NCBI_GenBank
Match: PRW57384.1 (F-box only 31-B-like [Chlorella sorokiniana])

HSP 1 Score: 72.8 bits (177), Expect = 3.200e-9
Identity = 59/185 (31.89%), Postives = 88/185 (47.57%), Query Frame = 0
Query:  271 QELEGLRGFWVGTYGSHGQEIIQVRFTTTNKATATTTDDVSTTAGIAVAPVAVPLP-VIMEGIKIVGDANVPANEWSFRVDVST---GPLDKAR----ALGADM-RPVYTLDSHMQPRPRILSQEAGRIQSVYRGKGQINMVPGIWSPQEVGVDVVVLRPEENEGKGGLWVIWHDVEYTSRHCID 447
            + +   RG   G+YG HG E++Q+       A +++ +D         AP   P+    ++G+K++GD NVPA + SF  D ++   GP D+      A G  + RP      H      ++  EA  + + +R  GQINMVPG W P  V   V+V  P  +   G L VI+ D     RH ID
Sbjct:  264 ESITNRRGVRTGSYGPHGMEVLQL-------AVSSSQED---------APPGCPIQGPRLQGLKLLGDPNVPALKHSFVADATSCRMGPYDRDTDDPFAPGPGLARPCLAFFQH---GTALVDVEARPVLARFRAVGQINMVPGQWQPDWVPATVLVYAPPMD---GTLTVIFEDEGEPFRHAID 426          
BLAST of NO18G01390 vs. NCBI_GenBank
Match: CBJ32163.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.5 bits (158), Expect = 5.200e-7
Identity = 43/111 (38.74%), Postives = 57/111 (51.35%), Query Frame = 0
Query:  313 TAGIAVAPVAVPLPVIMEGIKIVGDANVPANEWSFRVDVSTGPLDKARALGADMRPVYTLDSHMQPRPRILSQEAGRIQSV---YRGKGQINMVPGIWSPQEVGVDVVVLR 421
            TAG         +P  + G K+ GD NVPA + SF +D+ST   D    L +D RPV T      P   +++  A R Q +     G+GQIN VPG WSP+ V V+ V  R
Sbjct:  345 TAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLST-DFDVDEELRSDSRPVVT----FLPTGAVMANLANRRQQISCWRNGRGQINRVPGRWSPEWVDVEFVEYR 450          
The following BLAST results are available for this feature:
BLAST of NO18G01390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM23362.17.000e-8943.23hypothetical protein Naga_100057g11 [Nannochlorops... [more]
PRW57384.13.200e-931.89F-box only 31-B-like [Chlorella sorokiniana][more]
CBJ32163.15.200e-738.74expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003995NSK003995Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01390.1NO18G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|301951gene_9068Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g11gene7103Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01390.1NO18G01390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01390 ID=NO18G01390|Name=NO18G01390|organism=Nannochloropsis oceanica|type=gene|length=1520bp
ATGGCTGACGCAGTACCGATGCCCTCGTTGCCGCCTTCCGTAGgtgagtc
tcgtatgtctacacacgtagggctttccttttttctctttccacgcgtac
gctccctccaccgccttcacatcaaacccttccgcacccctgtcccgtag
CCATCCTCTCCACTGACCTAGTGGTCTTTATGCTGCAATTTCTTGGCGCC
AAAGACACGGCGCGCATGTGCCGAATTAGCTCTGCCTTCCACCATCTTGT
CCAGGCGAATGACGAGGCCCTTTTTCGCCCGCACGTGCTTAGGCAGCGTC
TGGTCTCCCAACCCATCCCCCTTACGCCCCAGCAGAACCTTGCCGCTGCC
CATACCTTGCGAACCGCCTTGGCGCCACCGGGCGGTTGGAAAGGGCTGTA
TCACGTCACGAAGTACTTGCTAGGAGTGCCGTGCCTTGGATACTTCCGGC
GCGTGCCCCGAGATTTCGGAACGGATTACAAAGGACAGCTCATGCGTCTG
CGGCCCACCCTCGAGGTGAATGTTGGTGTAGAGATAAGCAGCAACTTCCG
TCCCACGCCGGGGCTTGGGCTGTCTCTGGAAGTTCTCACGCCCACAGGAA
CGAGTATTACAAATGGTACTTCTTTCTTTCGGCTATGTGAACAGCGAGAG
ACAGCACACGGCTTGTGCATGAAAGGGCGCACAGTCGACCAGAAAATCGA
GATAGAATGGTGCGCCCACATTGCGGTTAGAGGCCACGAAGACGAGGACG
ATGCGGCAGGCAGTCAGAACTCTAACGAAGATGGGCAAAGTCCTTGTTTC
GACATGACCCTTCACCCGGATGAGATGGTGGACGGCCAGACAATTATTAT
TCAACAATGTTTTCACGCATTGCTTTCAGAGCCACCGTCACTGATGCTCT
GTGAAAGTGCCTACTGCCAAGAGCTGGAGGGCCTGCGTGGATTTTGGGTG
GGGACGTATGGGAGCCACGGGCAGGAGATCATCCAAGTGCGTTTCACGAC
CACAAACAAGGCGACTGCGACTACAACAGACGACGTCAGCACTACAGCAG
GGATAGCAGTAGCACCAGTGGCAGTACCACTACCCGTCATTATGGAGGGC
ATAAAGATCGTGGGTGACGCCAACGTGCCCGCGAACGAGTGGTCATTCCG
CGTGGACGTGTCGACCGGGCCACTCGACAAGGCTCGAGCTCTCGGAGCAG
ACATGCGGCCTGTCTACACGCTTGACAGCCACATGCAGCCCAGGCCTCGT
ATCTTGTCGCAGGAGGCGGGCCGGATTCAGTCAGTTTATCGGGGCAAAGG
GCAGATTAACATGGTGCCTGGAATTTGGAGCCCACAGGAGGTGGGGGTGG
ATGTTGTGGTGTTACGACCAGAGGAAAATGAGGGAAAGGGCGGGTTGTGG
GTGATCTGGCATGATGTGGAGTATACTTCCCGACATTGTATCGACTTGAC
TCGCTTAGTGGAGACGAAAGCGGACGAGGAACATCACGGACAACAGGAAG
AAGACAATATGGGGGACTGA
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protein sequence of NO18G01390.1

>NO18G01390.1-protein ID=NO18G01390.1-protein|Name=NO18G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MADAVPMPSLPPSVAILSTDLVVFMLQFLGAKDTARMCRISSAFHHLVQA
NDEALFRPHVLRQRLVSQPIPLTPQQNLAAAHTLRTALAPPGGWKGLYHV
TKYLLGVPCLGYFRRVPRDFGTDYKGQLMRLRPTLEVNVGVEISSNFRPT
PGLGLSLEVLTPTGTSITNGTSFFRLCEQRETAHGLCMKGRTVDQKIEIE
WCAHIAVRGHEDEDDAAGSQNSNEDGQSPCFDMTLHPDEMVDGQTIIIQQ
CFHALLSEPPSLMLCESAYCQELEGLRGFWVGTYGSHGQEIIQVRFTTTN
KATATTTDDVSTTAGIAVAPVAVPLPVIMEGIKIVGDANVPANEWSFRVD
VSTGPLDKARALGADMRPVYTLDSHMQPRPRILSQEAGRIQSVYRGKGQI
NMVPGIWSPQEVGVDVVVLRPEENEGKGGLWVIWHDVEYTSRHCIDLTRL
VETKADEEHHGQQEEDNMGD*
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Synonyms
Publications