NO18G01390, NO18G01390 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G01390 vs. NCBI_GenBank
Match: EWM23362.1 (hypothetical protein Naga_100057g11 [Nannochloropsis gaditana]) HSP 1 Score: 337.4 bits (864), Expect = 7.000e-89 Identity = 201/465 (43.23%), Postives = 274/465 (58.92%), Query Frame = 0 Query: 5 VPMPSLP-PSVAILSTDLVVFMLQFLGAKDTARMCRISSAFHHLVQANDEALFRPHVLRQRLVSQPIPLTPQQNLAAAHTLRTALAPPGGWKGLYHVTKYLLGVPCLGYFRRVPRDFGTDYKGQLMRLR--PTLEVNVGVEISSNFRPTPGLGLSLEVLTPTGT-SITNGTSFFRLCEQRETAHGLCMKGRTVDQKIEIEWCAHIAV--RGHEDEDDAAGSQNSNEDGQSPCFDMTLHPDEMVDGQTIIIQQCFHALLSEPPSLMLCES-AYCQELEGLRGFWVGTYGSHGQEIIQVRFTTTNKATATTTDDVSTTAGIAVAPVAVPLPVIMEGIKIVGDANVPANEWSFRVDVSTGPLDKARALGADMRPVYTLDSHMQPRPRILSQEAGRIQSVYRGKGQINMVPGIWSPQEVGVDVVVLRPEENEGKGGLWVIWHDVEYTSRHCIDLTRLVETKADEEHHGQ 463 V PS P P + LS D ++ +LQFL D R+C + + V +DE LF+ HVL ++LVS P P+T +Q + AA TL+TALA GGW+GL +VT+++ G PCLGYFR++PRDF +D++G+L R+R T ++ R G GL LE +T + T + +R Q G C+ G D + ++W A + RG ED AA +Q CF+ + AL P L L S +E E L+G W G YGSHG EIIQVR T G A ++ VI+EG+K+VGDANVPANEW+FR DV+ PLD+A ALGAD RP+Y+L + M P+ +L++EAGRI++VYRGKGQ+NMVPGIW PQEVGVDV++LR EEN G+GG+W++WHD ++SRHCI+LTRL+E + E G+ Sbjct: 4 VTTPSTPRPFLGTLSGDTLLTVLQFLEVADGTRVCLVCPYLNKSVCEHDEVLFKAHVLNEQLVSLPTPVTLKQKVRAAQTLQTALALKGGWRGLSYVTRHVTGRPCLGYFRQIPRDFRSDFRGKLFRVRLEDTEVSDMAWAPEGLPRGREGRGLVLEEVTFSCTHEVVKALRLYRAPGQ----SGSCL-GGVCDGEPLVKWTARVEPKGRGRSREDRAADTQ--------VCFE--------------VFHSRVGALHPLAPCLSLSASGGQLREFEDLQGLWRGVYGSHGWEIIQVRLRRL------------WTDGSAGTSPSIGGRVILEGLKLVGDANVPANEWTFRADVTAPPLDRAEALGADTRPIYSLTTRMVPQSWVLAEEAGRIRAVYRGKGQVNMVPGIWEPQEVGVDVMLLRREENGGRGGIWLLWHDEGFSSRHCIELTRLIEGEEAGEGEGR 429
BLAST of NO18G01390 vs. NCBI_GenBank
Match: PRW57384.1 (F-box only 31-B-like [Chlorella sorokiniana]) HSP 1 Score: 72.8 bits (177), Expect = 3.200e-9 Identity = 59/185 (31.89%), Postives = 88/185 (47.57%), Query Frame = 0 Query: 271 QELEGLRGFWVGTYGSHGQEIIQVRFTTTNKATATTTDDVSTTAGIAVAPVAVPLP-VIMEGIKIVGDANVPANEWSFRVDVST---GPLDKAR----ALGADM-RPVYTLDSHMQPRPRILSQEAGRIQSVYRGKGQINMVPGIWSPQEVGVDVVVLRPEENEGKGGLWVIWHDVEYTSRHCID 447 + + RG G+YG HG E++Q+ A +++ +D AP P+ ++G+K++GD NVPA + SF D ++ GP D+ A G + RP H ++ EA + + +R GQINMVPG W P V V+V P + G L VI+ D RH ID Sbjct: 264 ESITNRRGVRTGSYGPHGMEVLQL-------AVSSSQED---------APPGCPIQGPRLQGLKLLGDPNVPALKHSFVADATSCRMGPYDRDTDDPFAPGPGLARPCLAFFQH---GTALVDVEARPVLARFRAVGQINMVPGQWQPDWVPATVLVYAPPMD---GTLTVIFEDEGEPFRHAID 426
BLAST of NO18G01390 vs. NCBI_GenBank
Match: CBJ32163.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 65.5 bits (158), Expect = 5.200e-7 Identity = 43/111 (38.74%), Postives = 57/111 (51.35%), Query Frame = 0 Query: 313 TAGIAVAPVAVPLPVIMEGIKIVGDANVPANEWSFRVDVSTGPLDKARALGADMRPVYTLDSHMQPRPRILSQEAGRIQSV---YRGKGQINMVPGIWSPQEVGVDVVVLR 421 TAG +P + G K+ GD NVPA + SF +D+ST D L +D RPV T P +++ A R Q + G+GQIN VPG WSP+ V V+ V R Sbjct: 345 TAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLST-DFDVDEELRSDSRPVVT----FLPTGAVMANLANRRQQISCWRNGRGQINRVPGRWSPEWVDVEFVEYR 450 The following BLAST results are available for this feature:
BLAST of NO18G01390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G01390 ID=NO18G01390|Name=NO18G01390|organism=Nannochloropsis oceanica|type=gene|length=1520bpback to top protein sequence of NO18G01390.1 >NO18G01390.1-protein ID=NO18G01390.1-protein|Name=NO18G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bpback to top Synonyms
Publications
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