NO18G01390.1, NO18G01390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01390.1
Unique NameNO18G01390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1413
Alignment locationchr18:467698..469217 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:467698..469217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01390.1 vs.
Match: EWM23362.1 (hypothetical protein Naga_100057g11 [Nannochloropsis gaditana])

HSP 1 Score: 337.4 bits (864), Expect = 7.000e-89
Identity = 202/465 (43.44%), Postives = 274/465 (58.92%), Query Frame = 0 
Query:    5 VPMPSLP-PSVAILSTDLVVFMLQFLGAKDTARMCRISSAFHHLVQANDEALFRPHVLRQRLVSQPIPLTPQQNLAAAHTLRTALAPPGGWKGLYHVTKYLLGVPCLGYFRRVPRDFGTDYKGQLMRLR-PTLEVNVGVEISSNF-RPTPGLGLSLEVLTPTGT-SITNGTSFFRLCEQRETAHGLCMKGRTVDQKIEIEWCAHIAV--RGHEDEDDAAGSQNSNEDGQSPCFDMTLHPDEMVDGQTIIIQQCFHALLSEPPSLMLCESA-YCQELEGLRGFWVGTYGSHGQEIIQVRFTTTNKATATTTDDVSTTAGIAVAPVAVPLPVIMEGIKIVGDANVPANEWSFRVDVSTGPLDKARALGADMRPVYTLDSHMQPRPRILSQEAGRIQSVYRGKGQINMVPGIWSPQEVGVDVVVLRPEENEGKGGLWVIWHDVEYTSRHCIDLTRLVETKADEEHHGQ 463
            V  PS P P +  LS D ++ +LQFL   D  R+C +    +  V  +DE LF+ HVL ++LVS P P+T +Q + AA TL+TALA  GGW+GL +VT+++ G PCLGYFR++PRDF +D++G+L R+R    EV+          R   G GL LE +T + T  +      +R   Q     G C+ G   D +  ++W A +    RG   ED AA +Q         CF+              +      AL    P L L  S    +E E L+G W G YGSHG EIIQVR                 T G A    ++   VI+EG+K+VGDANVPANEW+FR DV+  PLD+A ALGAD RP+Y+L + M P+  +L++EAGRI++VYRGKGQ+NMVPGIW PQEVGVDV++LR EEN G+GG+W++WHD  ++SRHCI+LTRL+E +   E  G+
Sbjct:    4 VTTPSTPRPFLGTLSGDTLLTVLQFLEVADGTRVCLVCPYLNKSVCEHDEVLFKAHVLNEQLVSLPTPVTLKQKVRAAQTLQTALALKGGWRGLSYVTRHVTGRPCLGYFRQIPRDFRSDFRGKLFRVRLEDTEVSDMAWAPEGLPRGREGRGLVLEEVTFSCTHEVVKALRLYRAPGQS----GSCLGG-VCDGEPLVKWTARVEPKGRGRSREDRAADTQ--------VCFE--------------VFHSRVGALHPLAPCLSLSASGGQLREFEDLQGLWRGVYGSHGWEIIQVRLRRL------------WTDGSAGTSPSIGGRVILEGLKLVGDANVPANEWTFRADVTAPPLDRAEALGADTRPIYSLTTRMVPQSWVLAEEAGRIRAVYRGKGQVNMVPGIWEPQEVGVDVMLLRREENGGRGGIWLLWHDEGFSSRHCIELTRLIEGEEAGEGEGR 429
The following BLAST results are available for this feature:
BLAST of NO18G01390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23362.17.000e-8943.44hypothetical protein Naga_100057g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01390NO18G01390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01390.1NO18G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01390.1.cds1NO18G01390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01390.1.cds2NO18G01390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01390.1 ID=NO18G01390.1|Name=NO18G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp
ATGGCTGACGCAGTACCGATGCCCTCGTTGCCGCCTTCCGTAGCCATCCT
CTCCACTGACCTAGTGGTCTTTATGCTGCAATTTCTTGGCGCCAAAGACA
CGGCGCGCATGTGCCGAATTAGCTCTGCCTTCCACCATCTTGTCCAGGCG
AATGACGAGGCCCTTTTTCGCCCGCACGTGCTTAGGCAGCGTCTGGTCTC
CCAACCCATCCCCCTTACGCCCCAGCAGAACCTTGCCGCTGCCCATACCT
TGCGAACCGCCTTGGCGCCACCGGGCGGTTGGAAAGGGCTGTATCACGTC
ACGAAGTACTTGCTAGGAGTGCCGTGCCTTGGATACTTCCGGCGCGTGCC
CCGAGATTTCGGAACGGATTACAAAGGACAGCTCATGCGTCTGCGGCCCA
CCCTCGAGGTGAATGTTGGTGTAGAGATAAGCAGCAACTTCCGTCCCACG
CCGGGGCTTGGGCTGTCTCTGGAAGTTCTCACGCCCACAGGAACGAGTAT
TACAAATGGTACTTCTTTCTTTCGGCTATGTGAACAGCGAGAGACAGCAC
ACGGCTTGTGCATGAAAGGGCGCACAGTCGACCAGAAAATCGAGATAGAA
TGGTGCGCCCACATTGCGGTTAGAGGCCACGAAGACGAGGACGATGCGGC
AGGCAGTCAGAACTCTAACGAAGATGGGCAAAGTCCTTGTTTCGACATGA
CCCTTCACCCGGATGAGATGGTGGACGGCCAGACAATTATTATTCAACAA
TGTTTTCACGCATTGCTTTCAGAGCCACCGTCACTGATGCTCTGTGAAAG
TGCCTACTGCCAAGAGCTGGAGGGCCTGCGTGGATTTTGGGTGGGGACGT
ATGGGAGCCACGGGCAGGAGATCATCCAAGTGCGTTTCACGACCACAAAC
AAGGCGACTGCGACTACAACAGACGACGTCAGCACTACAGCAGGGATAGC
AGTAGCACCAGTGGCAGTACCACTACCCGTCATTATGGAGGGCATAAAGA
TCGTGGGTGACGCCAACGTGCCCGCGAACGAGTGGTCATTCCGCGTGGAC
GTGTCGACCGGGCCACTCGACAAGGCTCGAGCTCTCGGAGCAGACATGCG
GCCTGTCTACACGCTTGACAGCCACATGCAGCCCAGGCCTCGTATCTTGT
CGCAGGAGGCGGGCCGGATTCAGTCAGTTTATCGGGGCAAAGGGCAGATT
AACATGGTGCCTGGAATTTGGAGCCCACAGGAGGTGGGGGTGGATGTTGT
GGTGTTACGACCAGAGGAAAATGAGGGAAAGGGCGGGTTGTGGGTGATCT
GGCATGATGTGGAGTATACTTCCCGACATTGTATCGACTTGACTCGCTTA
GTGGAGACGAAAGCGGACGAGGAACATCACGGACAACAGGAAGAAGACAA
TATGGGGGACTGA
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protein sequence of NO18G01390.1

>NO18G01390.1-protein ID=NO18G01390.1-protein|Name=NO18G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MADAVPMPSLPPSVAILSTDLVVFMLQFLGAKDTARMCRISSAFHHLVQA
NDEALFRPHVLRQRLVSQPIPLTPQQNLAAAHTLRTALAPPGGWKGLYHV
TKYLLGVPCLGYFRRVPRDFGTDYKGQLMRLRPTLEVNVGVEISSNFRPT
PGLGLSLEVLTPTGTSITNGTSFFRLCEQRETAHGLCMKGRTVDQKIEIE
WCAHIAVRGHEDEDDAAGSQNSNEDGQSPCFDMTLHPDEMVDGQTIIIQQ
CFHALLSEPPSLMLCESAYCQELEGLRGFWVGTYGSHGQEIIQVRFTTTN
KATATTTDDVSTTAGIAVAPVAVPLPVIMEGIKIVGDANVPANEWSFRVD
VSTGPLDKARALGADMRPVYTLDSHMQPRPRILSQEAGRIQSVYRGKGQI
NMVPGIWSPQEVGVDVVVLRPEENEGKGGLWVIWHDVEYTSRHCIDLTRL
VETKADEEHHGQQEEDNMGD*
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mRNA from alignment at chr18:467698..469217+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01390.1 ID=NO18G01390.1|Name=NO18G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp|location=Sequence derived from alignment at chr18:467698..469217+ (Nannochloropsis oceanica)
ATGGCTGACGCAGTACCGATGCCCTCGTTGCCGCCTTCCGTAGGTGAGTC
TCGTATGTCTACACACGTAGGGCTTTCCTTTTTTCTCTTTCCACGCGTAC
GCTCCCTCCACCGCCTTCACATCAAACCCTTCCGCACCCCTGTCCCGTAG
CCATCCTCTCCACTGACCTAGTGGTCTTTATGCTGCAATTTCTTGGCGCC
AAAGACACGGCGCGCATGTGCCGAATTAGCTCTGCCTTCCACCATCTTGT
CCAGGCGAATGACGAGGCCCTTTTTCGCCCGCACGTGCTTAGGCAGCGTC
TGGTCTCCCAACCCATCCCCCTTACGCCCCAGCAGAACCTTGCCGCTGCC
CATACCTTGCGAACCGCCTTGGCGCCACCGGGCGGTTGGAAAGGGCTGTA
TCACGTCACGAAGTACTTGCTAGGAGTGCCGTGCCTTGGATACTTCCGGC
GCGTGCCCCGAGATTTCGGAACGGATTACAAAGGACAGCTCATGCGTCTG
CGGCCCACCCTCGAGGTGAATGTTGGTGTAGAGATAAGCAGCAACTTCCG
TCCCACGCCGGGGCTTGGGCTGTCTCTGGAAGTTCTCACGCCCACAGGAA
CGAGTATTACAAATGGTACTTCTTTCTTTCGGCTATGTGAACAGCGAGAG
ACAGCACACGGCTTGTGCATGAAAGGGCGCACAGTCGACCAGAAAATCGA
GATAGAATGGTGCGCCCACATTGCGGTTAGAGGCCACGAAGACGAGGACG
ATGCGGCAGGCAGTCAGAACTCTAACGAAGATGGGCAAAGTCCTTGTTTC
GACATGACCCTTCACCCGGATGAGATGGTGGACGGCCAGACAATTATTAT
TCAACAATGTTTTCACGCATTGCTTTCAGAGCCACCGTCACTGATGCTCT
GTGAAAGTGCCTACTGCCAAGAGCTGGAGGGCCTGCGTGGATTTTGGGTG
GGGACGTATGGGAGCCACGGGCAGGAGATCATCCAAGTGCGTTTCACGAC
CACAAACAAGGCGACTGCGACTACAACAGACGACGTCAGCACTACAGCAG
GGATAGCAGTAGCACCAGTGGCAGTACCACTACCCGTCATTATGGAGGGC
ATAAAGATCGTGGGTGACGCCAACGTGCCCGCGAACGAGTGGTCATTCCG
CGTGGACGTGTCGACCGGGCCACTCGACAAGGCTCGAGCTCTCGGAGCAG
ACATGCGGCCTGTCTACACGCTTGACAGCCACATGCAGCCCAGGCCTCGT
ATCTTGTCGCAGGAGGCGGGCCGGATTCAGTCAGTTTATCGGGGCAAAGG
GCAGATTAACATGGTGCCTGGAATTTGGAGCCCACAGGAGGTGGGGGTGG
ATGTTGTGGTGTTACGACCAGAGGAAAATGAGGGAAAGGGCGGGTTGTGG
GTGATCTGGCATGATGTGGAGTATACTTCCCGACATTGTATCGACTTGAC
TCGCTTAGTGGAGACGAAAGCGGACGAGGAACATCACGGACAACAGGAAG
AAGACAATATGGGGGACTGA
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Coding sequence (CDS) from alignment at chr18:467698..469217+

>NO18G01390.1 ID=NO18G01390.1|Name=NO18G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr18:467698..469217+ (Nannochloropsis oceanica)
ATGGCTGACGCAGTACCGATGCCCTCGTTGCCGCCTTCCGTAGCCATCCT
CTCCACTGACCTAGTGGTCTTTATGCTGCAATTTCTTGGCGCCAAAGACA
CGGCGCGCATGTGCCGAATTAGCTCTGCCTTCCACCATCTTGTCCAGGCG
AATGACGAGGCCCTTTTTCGCCCGCACGTGCTTAGGCAGCGTCTGGTCTC
CCAACCCATCCCCCTTACGCCCCAGCAGAACCTTGCCGCTGCCCATACCT
TGCGAACCGCCTTGGCGCCACCGGGCGGTTGGAAAGGGCTGTATCACGTC
ACGAAGTACTTGCTAGGAGTGCCGTGCCTTGGATACTTCCGGCGCGTGCC
CCGAGATTTCGGAACGGATTACAAAGGACAGCTCATGCGTCTGCGGCCCA
CCCTCGAGGTGAATGTTGGTGTAGAGATAAGCAGCAACTTCCGTCCCACG
CCGGGGCTTGGGCTGTCTCTGGAAGTTCTCACGCCCACAGGAACGAGTAT
TACAAATGGTACTTCTTTCTTTCGGCTATGTGAACAGCGAGAGACAGCAC
ACGGCTTGTGCATGAAAGGGCGCACAGTCGACCAGAAAATCGAGATAGAA
TGGTGCGCCCACATTGCGGTTAGAGGCCACGAAGACGAGGACGATGCGGC
AGGCAGTCAGAACTCTAACGAAGATGGGCAAAGTCCTTGTTTCGACATGA
CCCTTCACCCGGATGAGATGGTGGACGGCCAGACAATTATTATTCAACAA
TGTTTTCACGCATTGCTTTCAGAGCCACCGTCACTGATGCTCTGTGAAAG
TGCCTACTGCCAAGAGCTGGAGGGCCTGCGTGGATTTTGGGTGGGGACGT
ATGGGAGCCACGGGCAGGAGATCATCCAAGTGCGTTTCACGACCACAAAC
AAGGCGACTGCGACTACAACAGACGACGTCAGCACTACAGCAGGGATAGC
AGTAGCACCAGTGGCAGTACCACTACCCGTCATTATGGAGGGCATAAAGA
TCGTGGGTGACGCCAACGTGCCCGCGAACGAGTGGTCATTCCGCGTGGAC
GTGTCGACCGGGCCACTCGACAAGGCTCGAGCTCTCGGAGCAGACATGCG
GCCTGTCTACACGCTTGACAGCCACATGCAGCCCAGGCCTCGTATCTTGT
CGCAGGAGGCGGGCCGGATTCAGTCAGTTTATCGGGGCAAAGGGCAGATT
AACATGGTGCCTGGAATTTGGAGCCCACAGGAGGTGGGGGTGGATGTTGT
GGTGTTACGACCAGAGGAAAATGAGGGAAAGGGCGGGTTGTGGGTGATCT
GGCATGATGTGGAGTATACTTCCCGACATTGTATCGACTTGACTCGCTTA
GTGGAGACGAAAGCGGACGAGGAACATCACGGACAACAGGAAGAAGACAA
TATGGGGGACTGA
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Synonyms
Publications