NO18G01350, NO18G01350 (gene) Nannochloropsis oceanica

Overview
NameNO18G01350
Unique NameNO18G01350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1809
Alignment locationchr18:455802..457610 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:455802..457610 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO18G01350 vs. NCBI_GenBank
Match: XP_005855972.1 (hypothetical protein NGA_0523700, partial [Nannochloropsis gaditana CCMP526] >EKU20381.1 hypothetical protein NGA_0523700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.7 bits (465), Expect = 1.100e-42
Identity = 136/273 (49.82%), Postives = 162/273 (59.34%), Query Frame = 0 
Query:  119 PCARGRGSAQCEEDAKYDMAPSGLDSDEERFGXXXXXXXXXXXXXRWAKDALRDNEYIEELESQALKKRKKQLPQASIQPKQPNESMKAFQHRVRQDQKALLRESNLANSXXXXXXXXXXXXXXXXXXXXXQGLPALPDPRAEVEDKXXXXXHGERASQRAWMGPVPSFARAESITFGERNDAPPNLRLPRLPYERKAQAQSVAAAEARQKQTGKERVEKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREEAQQAYRTMKEGKQ 392
            PCARG+  A  EEDAKYD+ P+GLDS      XXXXXXXXXXXXX WA+DALRD+EYIE LE++A +KRKKQLP+ SIQP+QPNESMKAFQHRVRQD KALLRESNLANS                     QGLP LP  R+  +++        R +Q   M P PSFA AE++ FG+ NDAPP+L LPRLP + KA A+ +   + R  Q  +    +R+                                  LREEAQQAYR MKEGKQ
Sbjct:    1 PCARGQ--APREEDAKYDLPPAGLDS----XXXXXXXXXXXXXXXXWAQDALRDDEYIEMLENEATRKRKKQLPEISIQPRQPNESMKAFQHRVRQDSKALLRESNLANSTTKARRREYLRIRKANKKRKAQGLPPLPH-RSRGQEECDG-----RENQGGLMDPAPSFAAAETVPFGQTNDAPPDLHLPRLPDKLKAGARPI---DGRHGQAPQRPGGRRQELKANESGEKEGPVAKAAAARAKQSPAEKADWAKLREEAQQAYRAMKEGKQ 258
[Close]
BLAST of NO18G01350 vs. NCBI_GenBank
Match: EWM23345.1 (hypothetical protein Naga_100057g6 [Nannochloropsis gaditana])

HSP 1 Score: 120.9 bits (302), Expect = 8.700e-24
Identity = 73/138 (52.90%), Postives = 88/138 (63.77%), Query Frame = 0 
Query:  165 WAKDALRDNEYIEELESQALKKRKKQLPQASIQPKQPNESMKAFQHRVRQDQKALLRESNLANSXXXXXXXXXXXXXXXXXXXXXQGLPALPDPRAEVEDKXXXXXHGERASQRAWMGPVPSFARAESI---TFGERN 300
            WA+DALRD+EYIE LE++A +KRKKQLP+ SIQP+QPNESMKAFQHRVRQD KALLRESNLANS                     QGLP LP  R+  +++        R +Q   M P PSFA AE++     G+RN
Sbjct:   27 WAQDALRDDEYIEMLENEATRKRKKQLPEISIQPRQPNESMKAFQHRVRQDSKALLRESNLANSTTKARRREYLRIRKANKKRKAQGLPPLPH-RSRGQEECDG-----RENQGGLMDPAPSFAAAETVPDPAGGDRN 158
The following BLAST results are available for this feature:
BLAST of NO18G01350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855972.11.100e-4249.82hypothetical protein NGA_0523700, partial [Nannoch... [more]
EWM23345.18.700e-2452.90hypothetical protein Naga_100057g6 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003991NSK003991Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01350.1NO18G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607981gene_9064Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g6gene7106Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01350.1NO18G01350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01350 ID=NO18G01350|Name=NO18G01350|organism=Nannochloropsis oceanica|type=gene|length=1809bp
GGATACGCTGGCTGCTTGCGTAACGCCACATCGTTTCGCTCATGGCCCAC
CGATGGAGTGTGCTTTGGGTTGCCCAACCACCGACTGGCAACGACCAAAA
GGTAAGTAAATCATGCAGGAAACACGGTCATATCATAAAGCATGTGGTTA
TAAAGAAACGAGGCCGTTGGTGACAGAACCCGATTCGGAAACAGAGGCCC
GCTGGACACCAAGACTTTGTCTCTGGCAGTTGGGTCGGGGGAGGAGTTTC
CCACGTTTCCTCGCGGGGGCAACGATCACGATTGAGCTTTTTCAAAATGC
TTCGCTCCCCATTTTTGCGCCAAAGCTCATTTCACAAAAGCTGTCATACT
ATGTGGCACTCTGCTTATGCATGCATGACCCAACGAGATCAAGATCCCGT
CACATCCTCGACACAGGAAGCAAGATGGGGCGGGTCCGGCGGTATAAGAA
GCTCAAGGCCTGTGATCCTTGTGCGCGCGGGCGGGGCTCAGCGCAGTGCG
AAGAGGATGCCAAGTATGATATGGCCCCGTCAGGGCTTGACTCGGACGAG
GAGAGATgtacgtacggcaaggggacagaaacaagacagcaggagagagg
agggaggtatagcaagcctattaagattgatgaattattagatatcgtat
ctgatattagatgtatggctccattcttcctttacacattttatgcatcc
gtatcacttttcacctgtcatcagtgccagccatcaatcatggaatcatg
gccatgtttgagacatattgttcaacgcgcgtgtcacattacggctattc
gctgcctctcccgtcactatctcatcctccccattatccgcatcaatctg
tgtaccccacaaatcccctttcatcacactcacccaccctcccctccaca
atacaaatacacagTTGGCGGAACAGGCGGCGGCCAAAAAAGACGGCGAC
AAGAGCGACGATGGGCAAAAGATGCCTTAAGGGACAACGAATATATCGAG
GAGCTCGAGAGCCAAGCCTTGAAGAAGCGAAAGAAGCAACTGCCGCAGGC
CTCCATCCAACCCAAGCAGCCGAATGAGgtttgttggtagatataacggc
ttgatgaccatatctcaagtcaccgtagaaatcctccagcttctctctct
tgttcgtcttgcttacttgcccctcccctcttacatccttcctacagAGC
ATGAAGGCCTTCCAACACCGCGTCAGACAAGATCAAAAAGCGCTCCTCCG
CGAAAGCAATTTGGCAAACAGTACTACCAAGACCCGGCGTCGTGAGTACA
TGAAAAAGAAGAAGCAGGACAAGAAACGCAAGGCTCAGGGTCTGCCTGCT
CTCCCTGACCCTCGAGCAGAGGTCGAAGACAAGGAGGAGGAGGAGGAGCA
CGGGGAGCGTGCAAGTCAGCGCGCGTGGATGGGGCCGGTGCCATCGTTTG
CACGAGCAGAATCGATAACATTTGGGGAGAGGAACGATGCGCCGCCAAAT
TTGCGCTTACCTCGTTTGCCGTATGAGCGCAAGGCTCAAGCTCAATCCGT
CGCTGCGGCCGAAGCAAGGCAAAAACAGACTGGAAAGGAGAGAGTAGAGA
AGAGGGAGTTGAAGAGGTGGGTGACAGGCAGGAAGGAGGAGGGGCAAAGT
GCAGCGGCGGCGGCTGCGAGGACGAAGCAACCACCTGCGGAGAAGGCAAA
GTGGGCCCGGCTGAGAGAGGAGGCCCAGCAAGCCTACCGCACTATGAAGG
AAGGCAAGCAGGGTTCGGTCAAAACATAAAGAAAGACAAGATACACTCGA
TGCTTGAGT
back to top

protein sequence of NO18G01350.1

>NO18G01350.1-protein ID=NO18G01350.1-protein|Name=NO18G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MQETRSYHKACGYKETRPLVTEPDSETEARWTPRLCLWQLGRGRSFPRFL
AGATITIELFQNASLPIFAPKLISQKLSYYVALCLCMHDPTRSRSRHILD
TGSKMGRVRRYKKLKACDPCARGRGSAQCEEDAKYDMAPSGLDSDEERFG
GTGGGQKRRRQERRWAKDALRDNEYIEELESQALKKRKKQLPQASIQPKQ
PNESMKAFQHRVRQDQKALLRESNLANSTTKTRRREYMKKKKQDKKRKAQ
GLPALPDPRAEVEDKEEEEEHGERASQRAWMGPVPSFARAESITFGERND
APPNLRLPRLPYERKAQAQSVAAAEARQKQTGKERVEKRELKRWVTGRKE
EGQSAAAAAARTKQPPAEKAKWARLREEAQQAYRTMKEGKQGSVKT*
back to top
Synonyms
Publications