NO18G01350.1, NO18G01350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01350.1
Unique NameNO18G01350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1333
Alignment locationchr18:455802..457610 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:455802..457610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01350.1 vs.
Match: XP_005855972.1 (hypothetical protein NGA_0523700, partial [Nannochloropsis gaditana CCMP526]; EKU20381.1 hypothetical protein NGA_0523700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 278.9 bits (712), Expect = 2.500e-71
Identity = 173/273 (63.37%), Postives = 203/273 (74.36%), Query Frame = 0 
Query:  119 PCARGRGSAQCEEDAKYDMAPSGLDSDEERFGGTGGGQKRRRQERRWAKDALRDNEYIEELESQALKKRKKQLPQASIQPKQPNESMKAFQHRVRQDQKALLRESNLANSTTKTRRREYMKKKKQDKKRKAQGLPALPDPRAEVEDKEEEEEHGERASQRAWMGPVPSFARAESITFGERNDAPPNLRLPRLPYERKAQAQSVAAAEARQKQTGKERVEKRELKRWVTGRKEEGQSAAAAAARTKQPPAEKAKWARLREEAQQAYRTMKEGKQ 392
            PCARG+  A  EEDAKYD+ P+GLDSDEE+    GGG+KRRRQERRWA+DALRD+EYIE LE++A +KRKKQLP+ SIQP+QPNESMKAFQHRVRQD KALLRESNLANSTTK RRREY++ +K +KKRKAQGLP LP           +EE   R +Q   M P PSFA AE++ FG+ NDAPP+L LPRLP + KA A+ +     +  Q    R  ++ELK   +G K EG  A AAAAR KQ PAEKA WA+LREEAQQAYR MKEGKQ
Sbjct:    1 PCARGQ--APREEDAKYDLPPAGLDSDEEK----GGGRKRRRQERRWAQDALRDDEYIEMLENEATRKRKKQLPEISIQPRQPNESMKAFQHRVRQDSKALLRESNLANSTTKARRREYLRIRKANKKRKAQGLPPLP------HRSRGQEECDGRENQGGLMDPAPSFAAAETVPFGQTNDAPPDLHLPRLPDKLKAGARPIDGRHGQAPQRPGGR--RQELKANESGEK-EGPVAKAAAARAKQSPAEKADWAKLREEAQQAYRAMKEGKQ 258
The following BLAST results are available for this feature:
BLAST of NO18G01350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855972.12.500e-7163.37hypothetical protein NGA_0523700, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01350NO18G01350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01350.1NO18G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01350.1.cds1NO18G01350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01350.1.cds2NO18G01350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01350.1.cds3NO18G01350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01350.1 ID=NO18G01350.1|Name=NO18G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1333bp
GGATACGCTGGCTGCTTGCGTAACGCCACATCGTTTCGCTCATGGCCCAC
CGATGGAGTGTGCTTTGGGTTGCCCAACCACCGACTGGCAACGACCAAAA
GGTAAGTAAATCATGCAGGAAACACGGTCATATCATAAAGCATGTGGTTA
TAAAGAAACGAGGCCGTTGGTGACAGAACCCGATTCGGAAACAGAGGCCC
GCTGGACACCAAGACTTTGTCTCTGGCAGTTGGGTCGGGGGAGGAGTTTC
CCACGTTTCCTCGCGGGGGCAACGATCACGATTGAGCTTTTTCAAAATGC
TTCGCTCCCCATTTTTGCGCCAAAGCTCATTTCACAAAAGCTGTCATACT
ATGTGGCACTCTGCTTATGCATGCATGACCCAACGAGATCAAGATCCCGT
CACATCCTCGACACAGGAAGCAAGATGGGGCGGGTCCGGCGGTATAAGAA
GCTCAAGGCCTGTGATCCTTGTGCGCGCGGGCGGGGCTCAGCGCAGTGCG
AAGAGGATGCCAAGTATGATATGGCCCCGTCAGGGCTTGACTCGGACGAG
GAGAGATTTGGCGGAACAGGCGGCGGCCAAAAAAGACGGCGACAAGAGCG
ACGATGGGCAAAAGATGCCTTAAGGGACAACGAATATATCGAGGAGCTCG
AGAGCCAAGCCTTGAAGAAGCGAAAGAAGCAACTGCCGCAGGCCTCCATC
CAACCCAAGCAGCCGAATGAGAGCATGAAGGCCTTCCAACACCGCGTCAG
ACAAGATCAAAAAGCGCTCCTCCGCGAAAGCAATTTGGCAAACAGTACTA
CCAAGACCCGGCGTCGTGAGTACATGAAAAAGAAGAAGCAGGACAAGAAA
CGCAAGGCTCAGGGTCTGCCTGCTCTCCCTGACCCTCGAGCAGAGGTCGA
AGACAAGGAGGAGGAGGAGGAGCACGGGGAGCGTGCAAGTCAGCGCGCGT
GGATGGGGCCGGTGCCATCGTTTGCACGAGCAGAATCGATAACATTTGGG
GAGAGGAACGATGCGCCGCCAAATTTGCGCTTACCTCGTTTGCCGTATGA
GCGCAAGGCTCAAGCTCAATCCGTCGCTGCGGCCGAAGCAAGGCAAAAAC
AGACTGGAAAGGAGAGAGTAGAGAAGAGGGAGTTGAAGAGGTGGGTGACA
GGCAGGAAGGAGGAGGGGCAAAGTGCAGCGGCGGCGGCTGCGAGGACGAA
GCAACCACCTGCGGAGAAGGCAAAGTGGGCCCGGCTGAGAGAGGAGGCCC
AGCAAGCCTACCGCACTATGAAGGAAGGCAAGCAGGGTTCGGTCAAAACA
TAAAGAAAGACAAGATACACTCGATGCTTGAGT
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protein sequence of NO18G01350.1

>NO18G01350.1-protein ID=NO18G01350.1-protein|Name=NO18G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MQETRSYHKACGYKETRPLVTEPDSETEARWTPRLCLWQLGRGRSFPRFL
AGATITIELFQNASLPIFAPKLISQKLSYYVALCLCMHDPTRSRSRHILD
TGSKMGRVRRYKKLKACDPCARGRGSAQCEEDAKYDMAPSGLDSDEERFG
GTGGGQKRRRQERRWAKDALRDNEYIEELESQALKKRKKQLPQASIQPKQ
PNESMKAFQHRVRQDQKALLRESNLANSTTKTRRREYMKKKKQDKKRKAQ
GLPALPDPRAEVEDKEEEEEHGERASQRAWMGPVPSFARAESITFGERND
APPNLRLPRLPYERKAQAQSVAAAEARQKQTGKERVEKRELKRWVTGRKE
EGQSAAAAAARTKQPPAEKAKWARLREEAQQAYRTMKEGKQGSVKT*
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mRNA from alignment at chr18:455802..457610+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01350.1 ID=NO18G01350.1|Name=NO18G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp|location=Sequence derived from alignment at chr18:455802..457610+ (Nannochloropsis oceanica)
GGATACGCTGGCTGCTTGCGTAACGCCACATCGTTTCGCTCATGGCCCAC
CGATGGAGTGTGCTTTGGGTTGCCCAACCACCGACTGGCAACGACCAAAA
GGTAAGTAAATCATGCAGGAAACACGGTCATATCATAAAGCATGTGGTTA
TAAAGAAACGAGGCCGTTGGTGACAGAACCCGATTCGGAAACAGAGGCCC
GCTGGACACCAAGACTTTGTCTCTGGCAGTTGGGTCGGGGGAGGAGTTTC
CCACGTTTCCTCGCGGGGGCAACGATCACGATTGAGCTTTTTCAAAATGC
TTCGCTCCCCATTTTTGCGCCAAAGCTCATTTCACAAAAGCTGTCATACT
ATGTGGCACTCTGCTTATGCATGCATGACCCAACGAGATCAAGATCCCGT
CACATCCTCGACACAGGAAGCAAGATGGGGCGGGTCCGGCGGTATAAGAA
GCTCAAGGCCTGTGATCCTTGTGCGCGCGGGCGGGGCTCAGCGCAGTGCG
AAGAGGATGCCAAGTATGATATGGCCCCGTCAGGGCTTGACTCGGACGAG
GAGAGATGTACGTACGGCAAGGGGACAGAAACAAGACAGCAGGAGAGAGG
AGGGAGGTATAGCAAGCCTATTAAGATTGATGAATTATTAGATATCGTAT
CTGATATTAGATGTATGGCTCCATTCTTCCTTTACACATTTTATGCATCC
GTATCACTTTTCACCTGTCATCAGTGCCAGCCATCAATCATGGAATCATG
GCCATGTTTGAGACATATTGTTCAACGCGCGTGTCACATTACGGCTATTC
GCTGCCTCTCCCGTCACTATCTCATCCTCCCCATTATCCGCATCAATCTG
TGTACCCCACAAATCCCCTTTCATCACACTCACCCACCCTCCCCTCCACA
ATACAAATACACAGTTGGCGGAACAGGCGGCGGCCAAAAAAGACGGCGAC
AAGAGCGACGATGGGCAAAAGATGCCTTAAGGGACAACGAATATATCGAG
GAGCTCGAGAGCCAAGCCTTGAAGAAGCGAAAGAAGCAACTGCCGCAGGC
CTCCATCCAACCCAAGCAGCCGAATGAGGTTTGTTGGTAGATATAACGGC
TTGATGACCATATCTCAAGTCACCGTAGAAATCCTCCAGCTTCTCTCTCT
TGTTCGTCTTGCTTACTTGCCCCTCCCCTCTTACATCCTTCCTACAGAGC
ATGAAGGCCTTCCAACACCGCGTCAGACAAGATCAAAAAGCGCTCCTCCG
CGAAAGCAATTTGGCAAACAGTACTACCAAGACCCGGCGTCGTGAGTACA
TGAAAAAGAAGAAGCAGGACAAGAAACGCAAGGCTCAGGGTCTGCCTGCT
CTCCCTGACCCTCGAGCAGAGGTCGAAGACAAGGAGGAGGAGGAGGAGCA
CGGGGAGCGTGCAAGTCAGCGCGCGTGGATGGGGCCGGTGCCATCGTTTG
CACGAGCAGAATCGATAACATTTGGGGAGAGGAACGATGCGCCGCCAAAT
TTGCGCTTACCTCGTTTGCCGTATGAGCGCAAGGCTCAAGCTCAATCCGT
CGCTGCGGCCGAAGCAAGGCAAAAACAGACTGGAAAGGAGAGAGTAGAGA
AGAGGGAGTTGAAGAGGTGGGTGACAGGCAGGAAGGAGGAGGGGCAAAGT
GCAGCGGCGGCGGCTGCGAGGACGAAGCAACCACCTGCGGAGAAGGCAAA
GTGGGCCCGGCTGAGAGAGGAGGCCCAGCAAGCCTACCGCACTATGAAGG
AAGGCAAGCAGGGTTCGGTCAAAACATAAAGAAAGACAAGATACACTCGA
TGCTTGAGT
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Coding sequence (CDS) from alignment at chr18:455802..457610+

>NO18G01350.1 ID=NO18G01350.1|Name=NO18G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at chr18:455802..457610+ (Nannochloropsis oceanica)
ATGCAGGAAACACGGTCATATCATAAAGCATGTGGTTATAAAGAAACGAG
GCCGTTGGTGACAGAACCCGATTCGGAAACAGAGGCCCGCTGGACACCAA
GACTTTGTCTCTGGCAGTTGGGTCGGGGGAGGAGTTTCCCACGTTTCCTC
GCGGGGGCAACGATCACGATTGAGCTTTTTCAAAATGCTTCGCTCCCCAT
TTTTGCGCCAAAGCTCATTTCACAAAAGCTGTCATACTATGTGGCACTCT
GCTTATGCATGCATGACCCAACGAGATCAAGATCCCGTCACATCCTCGAC
ACAGGAAGCAAGATGGGGCGGGTCCGGCGGTATAAGAAGCTCAAGGCCTG
TGATCCTTGTGCGCGCGGGCGGGGCTCAGCGCAGTGCGAAGAGGATGCCA
AGTATGATATGGCCCCGTCAGGGCTTGACTCGGACGAGGAGAGATTTGGC
GGAACAGGCGGCGGCCAAAAAAGACGGCGACAAGAGCGACGATGGGCAAA
AGATGCCTTAAGGGACAACGAATATATCGAGGAGCTCGAGAGCCAAGCCT
TGAAGAAGCGAAAGAAGCAACTGCCGCAGGCCTCCATCCAACCCAAGCAG
CCGAATGAGAGCATGAAGGCCTTCCAACACCGCGTCAGACAAGATCAAAA
AGCGCTCCTCCGCGAAAGCAATTTGGCAAACAGTACTACCAAGACCCGGC
GTCGTGAGTACATGAAAAAGAAGAAGCAGGACAAGAAACGCAAGGCTCAG
GGTCTGCCTGCTCTCCCTGACCCTCGAGCAGAGGTCGAAGACAAGGAGGA
GGAGGAGGAGCACGGGGAGCGTGCAAGTCAGCGCGCGTGGATGGGGCCGG
TGCCATCGTTTGCACGAGCAGAATCGATAACATTTGGGGAGAGGAACGAT
GCGCCGCCAAATTTGCGCTTACCTCGTTTGCCGTATGAGCGCAAGGCTCA
AGCTCAATCCGTCGCTGCGGCCGAAGCAAGGCAAAAACAGACTGGAAAGG
AGAGAGTAGAGAAGAGGGAGTTGAAGAGGTGGGTGACAGGCAGGAAGGAG
GAGGGGCAAAGTGCAGCGGCGGCGGCTGCGAGGACGAAGCAACCACCTGC
GGAGAAGGCAAAGTGGGCCCGGCTGAGAGAGGAGGCCCAGCAAGCCTACC
GCACTATGAAGGAAGGCAAGCAGGGTTCGGTCAAAACATAA
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Synonyms
Publications