NO18G01270, NO18G01270 (gene) Nannochloropsis oceanica

Overview
NameNO18G01270
Unique NameNO18G01270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1116
Alignment locationchr18:434963..436078 -

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Properties
Property NameValue
DescriptionSNARE associated Golgi protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:434963..436078 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR015414Tvp38/TMEM64-like
IPR032816SNARE_assoc
Homology
BLAST of NO18G01270 vs. NCBI_GenBank
Match: OQR95846.1 (ATP-binding Cassette (ABC) superfamily [Achlya hypogyna])

HSP 1 Score: 68.9 bits (167), Expect = 3.100e-8
Identity = 62/236 (26.27%), Postives = 105/236 (44.49%), Query Frame = 0
Query:   43 MAKARGWIFLAFLIGF-ALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLV--EERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKSKGSQI---LEIIGIVSIFLVLVCGGYYGRKYVRQI-NAEKEAEM 272
            M+K  G   LA + G  AL+        + DS  WL+    +G  ++ V     I++   A L +LI+G+V+G   G+ +S V K   + LA+  GRYLL   ++           A+  L+   +  W+   L R + +P A+K+YGL  +  P   FF   L++      +   LG      + +         +   L  +G  S   +L   GY  RKY+ ++ +AE++  M
Sbjct:    1 MSKHLGLAALAVVAGSGALIWHYASPSFVADSVEWLRAHQLMGGVLYTVGFTASIVLCLPATLFELIAGYVFGFWGGWAISIVAKTAGSCLAFCLGRYLLHARVLRLLDSGAPLFRALGLLLARSDMKWKIVCLARAAWMPIAIKNYGLSVLPVPFSLFFWSTLLLGTPFGGISCYLGHSATQVSSLLSGHHDSGYLKFGLLAVGAASGLALLCLVGYQTRKYIEELADAERDDRM 236          
BLAST of NO18G01270 vs. NCBI_GenBank
Match: PSC75739.1 (TVP38 TMEM64 family membrane [Micractinium conductrix])

HSP 1 Score: 68.6 bits (166), Expect = 4.100e-8
Identity = 65/256 (25.39%), Postives = 121/256 (47.27%), Query Frame = 0
Query:   46 ARGWIFLAFLIGFALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLS-IIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKSK-GSQILEIIGIVSIFLVLVCGGYYGRKYVRQINAEKEAEMAAVAPATSDDGSGSGTTLEEGPEAEEVL 300
            AR  +F+A +    L S +   Q I     W+++    G  +F  +  V +++   A ++ + +G V+G   G +L +V   L  T+A++ GRYLLR+++++Y  R++    A+ + +E   W+   LLRLS I P  V +Y L     P +P+F  + + +     +    G+   + AD+F  K+  G+     +  +S  L++V   Y      + I++         A  T DDG  +   +   P+  E+L
Sbjct:   41 ARLALFVALVASIVLASLSFDAQKIEGLLMWVQENKREGAVLFLALYTVGVVLMLPAMVMAMAAGAVFGLLYGTLLVWVGSSLGQTIAFVIGRYLLRELVVSYLTRQFPKWTAIDRALETEGWKLVTLLRLSPIAPWNVLNYALSVTAVPLVPYFLASALAILPYLLLFVYFGSLAGNLADVFTGKTGFGTNTTIAVATLSGVLMVVIVWYTTHVSRKAISS---------ALVTGDDGD-AVAEIAADPDVAELL 286          
BLAST of NO18G01270 vs. NCBI_GenBank
Match: XP_005848735.1 (hypothetical protein CHLNCDRAFT_144423 [Chlorella variabilis] >EFN56633.1 hypothetical protein CHLNCDRAFT_144423 [Chlorella variabilis])

HSP 1 Score: 68.2 bits (165), Expect = 5.300e-8
Identity = 54/207 (26.09%), Postives = 101/207 (48.79%), Query Frame = 0
Query:   50 IFLAFLIGFALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLS-IIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKS-KGSQILEIIGIVSIFLVLVCGGY 255
            +F+A +    L+S T     I     W++D    G  +F +V  V +++   A ++ + +G V+G   G +L ++   +  TLA++ GRYLLR++++ Y  R++    A+ K +E   W+   LLRLS I P  V +Y L     P   +   + + +     +    G+  ++ ADIF  ++  G+     +  +S  L++V   Y
Sbjct:   23 VFVALVTCIVLVSLTFDADRIEGLLVWVQDNKREGSVLFLLVYTVGVVLMFPAMVMAMAAGAVFGMLWGTLLVWLGSSVGQTLAFIVGRYLLRELVVQYLTRQFPKWTAIDKALESEGWKLVTLLRLSPIAPWNVLNYALSVTAVPLAAYVAASTLAILPYLLLFVYFGSLARNLADIFTGRAGLGTNTTIAMAAISGVLMVVIVAY 229          
BLAST of NO18G01270 vs. NCBI_GenBank
Match: XP_012199871.1 (hypothetical protein SPRG_05904 [Saprolegnia parasitica CBS 223.65] >KDO29368.1 hypothetical protein SPRG_05904 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-7
Identity = 58/226 (25.66%), Postives = 105/226 (46.46%), Query Frame = 0
Query:   55 LIGFALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVM----------ALLSWVLADLGAKLKDPADIFKAKSKGSQ--ILEIIGIVSIFLVLVCGGYYGRKYVRQINAEKE 269
            L+   ++  T+ R    D  TWL+    VG   F +V  + I+I   + + DL +G+ +G   G +++   K+L +  A+  GRYL++D +  +         A A L+E+   Q  +L++L+ +P A+K+YGL  +    + F+T AL  +           LL      + A L     +   +S  +Q  ++ +    S+ LV+    Y  R Y+  + AE E
Sbjct:  532 LVAAIIVYCTLPRASWHDMATWLQTHEVVGRIAFTLVYALCIVICCPSTIFDLFAGYTFGVGWGAVVAIAGKVLGSIAAFGIGRYLIQDRVRAHLDGGRPMFRAWALLIEQHEIQFAVLIQLAYLPIALKNYGLSILN---VSFWTFALSTLLIGGAESYLSVLLGHSTTKMSAILVADPQVHSPESHAAQTTLMLVAAAASVGLVIFV-SYRVRSYIDALAAEDE 753          
BLAST of NO18G01270 vs. NCBI_GenBank
Match: XP_008869069.1 (hypothetical protein H310_05973 [Aphanomyces invadans] >ETW02464.1 hypothetical protein H310_05973 [Aphanomyces invadans])

HSP 1 Score: 66.2 bits (160), Expect = 2.000e-7
Identity = 47/201 (23.38%), Postives = 95/201 (47.26%), Query Frame = 0
Query:   76 WLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKSK------GSQILEIIGIVSIFLVLVCGGYYGRKYV-----RQINA 266
            W +D   +G  ++ +     +++   + + DL++G+++G   G  ++   K L + +A+L GRY++ D +          L A A L+E    Q  +LL+ + IP  +K+YGL     P   F    +++    +W+   +G       +I  + +         ++L I+ +VS  L+ V G Y  ++Y+     R++NA
Sbjct:   69 WEQDHQVLGGLIYVLFYAACVVLCCPSTIFDLLAGYIFGFGFGTAVAMGGKTLGSVVAFLLGRYVMHDTIRRKLTEGPPVLRAWALLLERNELQFVLLLQFAYIPIFLKNYGLAVAGVPFGLFLWTNVVIGGARTWLAVYIGHSTAHITEILTSHAARGDARVAQEVLMIVAVVSTLLLFVVGSYRTKQYLDELADREVNA 269          
BLAST of NO18G01270 vs. NCBI_GenBank
Match: KDD72781.1 (hypothetical protein H632_c2907p0, partial [Helicosporidium sp. ATCC 50920])

HSP 1 Score: 64.3 bits (155), Expect = 7.700e-7
Identity = 61/213 (28.64%), Postives = 102/213 (47.89%), Query Frame = 0
Query:   76 WLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLS-IIPAAVKSYGLGAIQDPPLPFFTCA--LIVMALLSWVLADLGAKLKDPADIFKAKSKG----SQILEIIGIVSIFLVLVCGGYYGRKYVRQINAEKEAEMAAVAPATSDD 282
            W+++    G  +F V   + +++   A ++ + SG V+G   G +L++    +  T+ ++ GRYLLRD++  Y  R +    A+ + +    W+   LLRLS I P  V +Y L A+   PLP +  A  L V+  L+ + A  G+  +D AD+F  ++      +QI   IG  S  LVLV   Y      R +     A    + P  + D
Sbjct:   57 WVQNNKQAGSMLFLVGYTLGVVLMFPAIVMGMASGAVFGVTVGLLLAWAGTCIGQTITFVLGRYLLRDVVKTYLSRHFPKWTAIDRAMASEAWKLVTLLRLSPIAPWNVLNYAL-AVTAVPLPAYAVASGLAVLPYLA-LFAYFGSLARDMADVFSGEAAALDPTAQIAVAIG--SGVLVLVAVWYTTHVSRRAVAEALRAHADQLPPELTSD 265          
The following BLAST results are available for this feature:
BLAST of NO18G01270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 16
Match NameE-valueIdentityDescription
OQR95846.13.100e-826.27ATP-binding Cassette (ABC) superfamily [Achlya hyp... [more]
PSC75739.14.100e-825.39TVP38 TMEM64 family membrane [Micractinium conduct... [more]
XP_005848735.15.300e-826.09hypothetical protein CHLNCDRAFT_144423 [Chlorella ... [more]
XP_012199871.11.200e-725.66hypothetical protein SPRG_05904 [Saprolegnia paras... [more]
XP_008869069.12.000e-723.38hypothetical protein H310_05973 [Aphanomyces invad... [more]
KDD72781.17.700e-728.64hypothetical protein H632_c2907p0, partial [Helico... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003983NSK003983Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01270.1NO18G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607928gene_9053Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100053g2gene7113Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01270.1NO18G01270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01270 ID=NO18G01270|Name=NO18G01270|organism=Nannochloropsis oceanica|type=gene|length=1116bp
AACGACAGCCAAAAGGAGCGCCATGTCGTCCGTTGCTGGGAGGGCGACCC
CTCCCACAACCAAGGCCGCTTCGACTTCCTCGCCACATCAAGAACCCTCT
TACTACTCTTTCCCGCCGCCGAAGCACGAGGGACAGAAGAAAACATGCAT
GGCCAAGGCCCGCGGCTGGATCTTCCTCGCCTTTCTCATCGGTTTTGCCC
TCCTGAGCGGAACGGTCCTACGGCAGCCCATCATGGATAGCGAGACGTGG
CTCAAGGACCAGGGAACCGTCGGACTGGCAGTCTTCGGCGTGGTAAGCTG
GGTATTTATTATGATTGGGGGAAGTGCCAATCTCATCGACCTCATTAGCG
GGTTTGTGTACGGTGGAAAGACGGGCTTCATCCTGTCCTACGTGATCAAA
CTCTTGTCGACCACCCTTGCGTACCTGGCCGGAAGGTATCTTTTGCGCGA
CATGCTAATGAACTACTTCTTTAGAGAATACGTATGGTTAGCCGCGATGG
CCAAACTCGTGGAGGAACGGCCCTGGCAAAGCAACATCCTCTTGCGCCTT
TCGATCATCCCTGCGGCCGTGAAGAGCTACGGCCTCGGTGCCATACAAGA
CCCCCCCTTGCCCTTCTTCACTTGTGCCCTCATTGTCATGGCATTACTTT
CTTGGGTGCTTGCTGACCTAGGGGCCAAGCTGAAGGATCCTGCAGATATT
TTCAAAGCCAAAAGCAAGGGAAGTCAGATCCTGGAGATCATCGGCATCGT
GTCTATTTTTTTGGTCTTGGTGTGTGGCGGCTATTATGGTCGAAAGTATG
TGCGACAGATCAATGCGGAGAAGGAGGCAGAGATGGCAGCTGTGGCTCCG
GCGACCAGCGATGATGGTAGCGGTTCGGGGACGACCCTAGAGGAAGGACC
CGAGGCGGAGGAGGTATTGTTCAGCAGCAAGGACATTGTTGAGACGCAGG
CTACGCCACCGGTGGCATGAAGTAGATCAATGGGATGGACGCCCAAAAAG
TGACAATTCAAAAAAATGAAAAGGAAACAAAAATCAAACTTGGTAGTAAG
AATGGCATGCATGTGACAATCACAAAGCAAGTTATATACTCAGAAAGAAG
GGAAACACATGTGGTA
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protein sequence of NO18G01270.1

>NO18G01270.1-protein ID=NO18G01270.1-protein|Name=NO18G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MSSVAGRATPPTTKAASTSSPHQEPSYYSFPPPKHEGQKKTCMAKARGWI
FLAFLIGFALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGG
SANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFF
REYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFT
CALIVMALLSWVLADLGAKLKDPADIFKAKSKGSQILEIIGIVSIFLVLV
CGGYYGRKYVRQINAEKEAEMAAVAPATSDDGSGSGTTLEEGPEAEEVLF
SSKDIVETQATPPVA*
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Synonyms
Publications