NO18G01270, NO18G01270 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G01270 vs. NCBI_GenBank
Match: OQR95846.1 (ATP-binding Cassette (ABC) superfamily [Achlya hypogyna]) HSP 1 Score: 68.9 bits (167), Expect = 3.100e-8 Identity = 62/236 (26.27%), Postives = 105/236 (44.49%), Query Frame = 0 Query: 43 MAKARGWIFLAFLIGF-ALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLV--EERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKSKGSQI---LEIIGIVSIFLVLVCGGYYGRKYVRQI-NAEKEAEM 272 M+K G LA + G AL+ + DS WL+ +G ++ V I++ A L +LI+G+V+G G+ +S V K + LA+ GRYLL ++ A+ L+ + W+ L R + +P A+K+YGL + P FF L++ + LG + + + L +G S +L GY RKY+ ++ +AE++ M Sbjct: 1 MSKHLGLAALAVVAGSGALIWHYASPSFVADSVEWLRAHQLMGGVLYTVGFTASIVLCLPATLFELIAGYVFGFWGGWAISIVAKTAGSCLAFCLGRYLLHARVLRLLDSGAPLFRALGLLLARSDMKWKIVCLARAAWMPIAIKNYGLSVLPVPFSLFFWSTLLLGTPFGGISCYLGHSATQVSSLLSGHHDSGYLKFGLLAVGAASGLALLCLVGYQTRKYIEELADAERDDRM 236
BLAST of NO18G01270 vs. NCBI_GenBank
Match: PSC75739.1 (TVP38 TMEM64 family membrane [Micractinium conductrix]) HSP 1 Score: 68.6 bits (166), Expect = 4.100e-8 Identity = 65/256 (25.39%), Postives = 121/256 (47.27%), Query Frame = 0 Query: 46 ARGWIFLAFLIGFALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLS-IIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKSK-GSQILEIIGIVSIFLVLVCGGYYGRKYVRQINAEKEAEMAAVAPATSDDGSGSGTTLEEGPEAEEVL 300 AR +F+A + L S + Q I W+++ G +F + V +++ A ++ + +G V+G G +L +V L T+A++ GRYLLR+++++Y R++ A+ + +E W+ LLRLS I P V +Y L P +P+F + + + + G+ + AD+F K+ G+ + +S L++V Y + I++ A T DDG + + P+ E+L Sbjct: 41 ARLALFVALVASIVLASLSFDAQKIEGLLMWVQENKREGAVLFLALYTVGVVLMLPAMVMAMAAGAVFGLLYGTLLVWVGSSLGQTIAFVIGRYLLRELVVSYLTRQFPKWTAIDRALETEGWKLVTLLRLSPIAPWNVLNYALSVTAVPLVPYFLASALAILPYLLLFVYFGSLAGNLADVFTGKTGFGTNTTIAVATLSGVLMVVIVWYTTHVSRKAISS---------ALVTGDDGD-AVAEIAADPDVAELL 286
BLAST of NO18G01270 vs. NCBI_GenBank
Match: XP_005848735.1 (hypothetical protein CHLNCDRAFT_144423 [Chlorella variabilis] >EFN56633.1 hypothetical protein CHLNCDRAFT_144423 [Chlorella variabilis]) HSP 1 Score: 68.2 bits (165), Expect = 5.300e-8 Identity = 54/207 (26.09%), Postives = 101/207 (48.79%), Query Frame = 0 Query: 50 IFLAFLIGFALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLS-IIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKS-KGSQILEIIGIVSIFLVLVCGGY 255 +F+A + L+S T I W++D G +F +V V +++ A ++ + +G V+G G +L ++ + TLA++ GRYLLR++++ Y R++ A+ K +E W+ LLRLS I P V +Y L P + + + + + G+ ++ ADIF ++ G+ + +S L++V Y Sbjct: 23 VFVALVTCIVLVSLTFDADRIEGLLVWVQDNKREGSVLFLLVYTVGVVLMFPAMVMAMAAGAVFGMLWGTLLVWLGSSVGQTLAFIVGRYLLRELVVQYLTRQFPKWTAIDKALESEGWKLVTLLRLSPIAPWNVLNYALSVTAVPLAAYVAASTLAILPYLLLFVYFGSLARNLADIFTGRAGLGTNTTIAMAAISGVLMVVIVAY 229
BLAST of NO18G01270 vs. NCBI_GenBank
Match: XP_012199871.1 (hypothetical protein SPRG_05904 [Saprolegnia parasitica CBS 223.65] >KDO29368.1 hypothetical protein SPRG_05904 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 67.0 bits (162), Expect = 1.200e-7 Identity = 58/226 (25.66%), Postives = 105/226 (46.46%), Query Frame = 0 Query: 55 LIGFALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVM----------ALLSWVLADLGAKLKDPADIFKAKSKGSQ--ILEIIGIVSIFLVLVCGGYYGRKYVRQINAEKE 269 L+ ++ T+ R D TWL+ VG F +V + I+I + + DL +G+ +G G +++ K+L + A+ GRYL++D + + A A L+E+ Q +L++L+ +P A+K+YGL + + F+T AL + LL + A L + +S +Q ++ + S+ LV+ Y R Y+ + AE E Sbjct: 532 LVAAIIVYCTLPRASWHDMATWLQTHEVVGRIAFTLVYALCIVICCPSTIFDLFAGYTFGVGWGAVVAIAGKVLGSIAAFGIGRYLIQDRVRAHLDGGRPMFRAWALLIEQHEIQFAVLIQLAYLPIALKNYGLSILN---VSFWTFALSTLLIGGAESYLSVLLGHSTTKMSAILVADPQVHSPESHAAQTTLMLVAAAASVGLVIFV-SYRVRSYIDALAAEDE 753
BLAST of NO18G01270 vs. NCBI_GenBank
Match: XP_008869069.1 (hypothetical protein H310_05973 [Aphanomyces invadans] >ETW02464.1 hypothetical protein H310_05973 [Aphanomyces invadans]) HSP 1 Score: 66.2 bits (160), Expect = 2.000e-7 Identity = 47/201 (23.38%), Postives = 95/201 (47.26%), Query Frame = 0 Query: 76 WLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKSK------GSQILEIIGIVSIFLVLVCGGYYGRKYV-----RQINA 266 W +D +G ++ + +++ + + DL++G+++G G ++ K L + +A+L GRY++ D + L A A L+E Q +LL+ + IP +K+YGL P F +++ +W+ +G +I + + ++L I+ +VS L+ V G Y ++Y+ R++NA Sbjct: 69 WEQDHQVLGGLIYVLFYAACVVLCCPSTIFDLLAGYIFGFGFGTAVAMGGKTLGSVVAFLLGRYVMHDTIRRKLTEGPPVLRAWALLLERNELQFVLLLQFAYIPIFLKNYGLAVAGVPFGLFLWTNVVIGGARTWLAVYIGHSTAHITEILTSHAARGDARVAQEVLMIVAVVSTLLLFVVGSYRTKQYLDELADREVNA 269
BLAST of NO18G01270 vs. NCBI_GenBank
Match: KDD72781.1 (hypothetical protein H632_c2907p0, partial [Helicosporidium sp. ATCC 50920]) HSP 1 Score: 64.3 bits (155), Expect = 7.700e-7 Identity = 61/213 (28.64%), Postives = 102/213 (47.89%), Query Frame = 0 Query: 76 WLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLS-IIPAAVKSYGLGAIQDPPLPFFTCA--LIVMALLSWVLADLGAKLKDPADIFKAKSKG----SQILEIIGIVSIFLVLVCGGYYGRKYVRQINAEKEAEMAAVAPATSDD 282 W+++ G +F V + +++ A ++ + SG V+G G +L++ + T+ ++ GRYLLRD++ Y R + A+ + + W+ LLRLS I P V +Y L A+ PLP + A L V+ L+ + A G+ +D AD+F ++ +QI IG S LVLV Y R + A + P + D Sbjct: 57 WVQNNKQAGSMLFLVGYTLGVVLMFPAIVMGMASGAVFGVTVGLLLAWAGTCIGQTITFVLGRYLLRDVVKTYLSRHFPKWTAIDRAMASEAWKLVTLLRLSPIAPWNVLNYAL-AVTAVPLPAYAVASGLAVLPYLA-LFAYFGSLARDMADVFSGEAAALDPTAQIAVAIG--SGVLVLVAVWYTTHVSRRAVAEALRAHADQLPPELTSD 265 The following BLAST results are available for this feature:
BLAST of NO18G01270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 16
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G01270 ID=NO18G01270|Name=NO18G01270|organism=Nannochloropsis oceanica|type=gene|length=1116bpback to top protein sequence of NO18G01270.1 >NO18G01270.1-protein ID=NO18G01270.1-protein|Name=NO18G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bpback to top Synonyms
Publications
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