NO18G01270.1, NO18G01270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01270.1
Unique NameNO18G01270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1116
Alignment locationchr18:434963..436078 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:434963..436078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01270.1 vs.
Match: EWM23305.1 (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 384.0 bits (985), Expect = 4.400e-103
Identity = 196/299 (65.55%), Postives = 238/299 (79.60%), Query Frame = 0 
Query:   23 QEPSYYSFPPPKHEGQKKTCMAKARGWIFLAFLIGFALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKSKGSQILEIIGIVSIFLVLVCGGYYGRKYVRQINAEKEAEMAAV--APATSDDGSGSGTTLEEGPEA-EEVLFSSKDIVETQ---ATPPVA 316
            Q+P YYSFP  K E   K+  +KAR WIF+ FL+ FA+LS TVLRQPIMDSE WLK QG  GL V+G+VSW F+MIGGSANLIDLISGFVYG + G  ++YV+KLL+T  AYLAGRYL RD+L+ YFF+EYVWLAAM +LVEERPWQSN+L+RL+ IPAAVKSYGLGAI+DPP+PFF+CA+++MA LSW+L DLGAKL+DP DIFKAKS+GSQILEI+GI  IFLVLVCG ++GRKYVR+I AEKEAEM+AV    A   D   +       PEA EE+LF++KD+  +    +TP VA
Sbjct:   32 QKPGYYSFPQLKSEPPTKSWTSKARIWIFILFLVTFAVLSATVLRQPIMDSERWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIFKAKSEGSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEKEAEMSAVQSVAAGCADVESAQEDGNTPPEAEEEILFNTKDLATSSIAASTPAVA 330
The following BLAST results are available for this feature:
BLAST of NO18G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23305.14.400e-10365.55SNARE associated Golgi protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01270NO18G01270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01270.1NO18G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01270.1.cds1NO18G01270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01270.1 ID=NO18G01270.1|Name=NO18G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp
AACGACAGCCAAAAGGAGCGCCATGTCGTCCGTTGCTGGGAGGGCGACCC
CTCCCACAACCAAGGCCGCTTCGACTTCCTCGCCACATCAAGAACCCTCT
TACTACTCTTTCCCGCCGCCGAAGCACGAGGGACAGAAGAAAACATGCAT
GGCCAAGGCCCGCGGCTGGATCTTCCTCGCCTTTCTCATCGGTTTTGCCC
TCCTGAGCGGAACGGTCCTACGGCAGCCCATCATGGATAGCGAGACGTGG
CTCAAGGACCAGGGAACCGTCGGACTGGCAGTCTTCGGCGTGGTAAGCTG
GGTATTTATTATGATTGGGGGAAGTGCCAATCTCATCGACCTCATTAGCG
GGTTTGTGTACGGTGGAAAGACGGGCTTCATCCTGTCCTACGTGATCAAA
CTCTTGTCGACCACCCTTGCGTACCTGGCCGGAAGGTATCTTTTGCGCGA
CATGCTAATGAACTACTTCTTTAGAGAATACGTATGGTTAGCCGCGATGG
CCAAACTCGTGGAGGAACGGCCCTGGCAAAGCAACATCCTCTTGCGCCTT
TCGATCATCCCTGCGGCCGTGAAGAGCTACGGCCTCGGTGCCATACAAGA
CCCCCCCTTGCCCTTCTTCACTTGTGCCCTCATTGTCATGGCATTACTTT
CTTGGGTGCTTGCTGACCTAGGGGCCAAGCTGAAGGATCCTGCAGATATT
TTCAAAGCCAAAAGCAAGGGAAGTCAGATCCTGGAGATCATCGGCATCGT
GTCTATTTTTTTGGTCTTGGTGTGTGGCGGCTATTATGGTCGAAAGTATG
TGCGACAGATCAATGCGGAGAAGGAGGCAGAGATGGCAGCTGTGGCTCCG
GCGACCAGCGATGATGGTAGCGGTTCGGGGACGACCCTAGAGGAAGGACC
CGAGGCGGAGGAGGTATTGTTCAGCAGCAAGGACATTGTTGAGACGCAGG
CTACGCCACCGGTGGCATGAAGTAGATCAATGGGATGGACGCCCAAAAAG
TGACAATTCAAAAAAATGAAAAGGAAACAAAAATCAAACTTGGTAGTAAG
AATGGCATGCATGTGACAATCACAAAGCAAGTTATATACTCAGAAAGAAG
GGAAACACATGTGGTA
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protein sequence of NO18G01270.1

>NO18G01270.1-protein ID=NO18G01270.1-protein|Name=NO18G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MSSVAGRATPPTTKAASTSSPHQEPSYYSFPPPKHEGQKKTCMAKARGWI
FLAFLIGFALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGG
SANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFF
REYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFT
CALIVMALLSWVLADLGAKLKDPADIFKAKSKGSQILEIIGIVSIFLVLV
CGGYYGRKYVRQINAEKEAEMAAVAPATSDDGSGSGTTLEEGPEAEEVLF
SSKDIVETQATPPVA*
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mRNA from alignment at chr18:434963..436078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01270.1 ID=NO18G01270.1|Name=NO18G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp|location=Sequence derived from alignment at chr18:434963..436078- (Nannochloropsis oceanica)
AACGACAGCCAAAAGGAGCGCCATGTCGTCCGTTGCTGGGAGGGCGACCC
CTCCCACAACCAAGGCCGCTTCGACTTCCTCGCCACATCAAGAACCCTCT
TACTACTCTTTCCCGCCGCCGAAGCACGAGGGACAGAAGAAAACATGCAT
GGCCAAGGCCCGCGGCTGGATCTTCCTCGCCTTTCTCATCGGTTTTGCCC
TCCTGAGCGGAACGGTCCTACGGCAGCCCATCATGGATAGCGAGACGTGG
CTCAAGGACCAGGGAACCGTCGGACTGGCAGTCTTCGGCGTGGTAAGCTG
GGTATTTATTATGATTGGGGGAAGTGCCAATCTCATCGACCTCATTAGCG
GGTTTGTGTACGGTGGAAAGACGGGCTTCATCCTGTCCTACGTGATCAAA
CTCTTGTCGACCACCCTTGCGTACCTGGCCGGAAGGTATCTTTTGCGCGA
CATGCTAATGAACTACTTCTTTAGAGAATACGTATGGTTAGCCGCGATGG
CCAAACTCGTGGAGGAACGGCCCTGGCAAAGCAACATCCTCTTGCGCCTT
TCGATCATCCCTGCGGCCGTGAAGAGCTACGGCCTCGGTGCCATACAAGA
CCCCCCCTTGCCCTTCTTCACTTGTGCCCTCATTGTCATGGCATTACTTT
CTTGGGTGCTTGCTGACCTAGGGGCCAAGCTGAAGGATCCTGCAGATATT
TTCAAAGCCAAAAGCAAGGGAAGTCAGATCCTGGAGATCATCGGCATCGT
GTCTATTTTTTTGGTCTTGGTGTGTGGCGGCTATTATGGTCGAAAGTATG
TGCGACAGATCAATGCGGAGAAGGAGGCAGAGATGGCAGCTGTGGCTCCG
GCGACCAGCGATGATGGTAGCGGTTCGGGGACGACCCTAGAGGAAGGACC
CGAGGCGGAGGAGGTATTGTTCAGCAGCAAGGACATTGTTGAGACGCAGG
CTACGCCACCGGTGGCATGAAGTAGATCAATGGGATGGACGCCCAAAAAG
TGACAATTCAAAAAAATGAAAAGGAAACAAAAATCAAACTTGGTAGTAAG
AATGGCATGCATGTGACAATCACAAAGCAAGTTATATACTCAGAAAGAAG
GGAAACACATGTGGTA
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Coding sequence (CDS) from alignment at chr18:434963..436078-

>NO18G01270.1 ID=NO18G01270.1|Name=NO18G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr18:434963..436078- (Nannochloropsis oceanica)
ATGTCGTCCGTTGCTGGGAGGGCGACCCCTCCCACAACCAAGGCCGCTTC
GACTTCCTCGCCACATCAAGAACCCTCTTACTACTCTTTCCCGCCGCCGA
AGCACGAGGGACAGAAGAAAACATGCATGGCCAAGGCCCGCGGCTGGATC
TTCCTCGCCTTTCTCATCGGTTTTGCCCTCCTGAGCGGAACGGTCCTACG
GCAGCCCATCATGGATAGCGAGACGTGGCTCAAGGACCAGGGAACCGTCG
GACTGGCAGTCTTCGGCGTGGTAAGCTGGGTATTTATTATGATTGGGGGA
AGTGCCAATCTCATCGACCTCATTAGCGGGTTTGTGTACGGTGGAAAGAC
GGGCTTCATCCTGTCCTACGTGATCAAACTCTTGTCGACCACCCTTGCGT
ACCTGGCCGGAAGGTATCTTTTGCGCGACATGCTAATGAACTACTTCTTT
AGAGAATACGTATGGTTAGCCGCGATGGCCAAACTCGTGGAGGAACGGCC
CTGGCAAAGCAACATCCTCTTGCGCCTTTCGATCATCCCTGCGGCCGTGA
AGAGCTACGGCCTCGGTGCCATACAAGACCCCCCCTTGCCCTTCTTCACT
TGTGCCCTCATTGTCATGGCATTACTTTCTTGGGTGCTTGCTGACCTAGG
GGCCAAGCTGAAGGATCCTGCAGATATTTTCAAAGCCAAAAGCAAGGGAA
GTCAGATCCTGGAGATCATCGGCATCGTGTCTATTTTTTTGGTCTTGGTG
TGTGGCGGCTATTATGGTCGAAAGTATGTGCGACAGATCAATGCGGAGAA
GGAGGCAGAGATGGCAGCTGTGGCTCCGGCGACCAGCGATGATGGTAGCG
GTTCGGGGACGACCCTAGAGGAAGGACCCGAGGCGGAGGAGGTATTGTTC
AGCAGCAAGGACATTGTTGAGACGCAGGCTACGCCACCGGTGGCATGA
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Synonyms
Publications