NO18G01270, NO18G01270 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G01270 vs. NCBI_GenBank
Match: EWM23305.1 (SNARE associated Golgi protein [Nannochloropsis gaditana]) HSP 1 Score: 384.0 bits (985), Expect = 4.400e-103 Identity = 196/299 (65.55%), Postives = 238/299 (79.60%), Query Frame = 0 Query: 23 QEPSYYSFPPPKHEGQKKTCMAKARGWIFLAFLIGFALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKSKGSQILEIIGIVSIFLVLVCGGYYGRKYVRQINAEKEAEMAAV--APATSDDGSGSGTTLEEGPEA-EEVLFSSKDIVETQ---ATPPVA 316 Q+P YYSFP K E K+ +KAR WIF+ FL+ FA+LS TVLRQPIMDSE WLK QG GL V+G+VSW F+MIGGSANLIDLISGFVYG + G ++YV+KLL+T AYLAGRYL RD+L+ YFF+EYVWLAAM +LVEERPWQSN+L+RL+ IPAAVKSYGLGAI+DPP+PFF+CA+++MA LSW+L DLGAKL+DP DIFKAKS+GSQILEI+GI IFLVLVCG ++GRKYVR+I AEKEAEM+AV A D + PEA EE+LF++KD+ + +TP VA Sbjct: 32 QKPGYYSFPQLKSEPPTKSWTSKARIWIFILFLVTFAVLSATVLRQPIMDSERWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIFKAKSEGSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEKEAEMSAVQSVAAGCADVESAQEDGNTPPEAEEEILFNTKDLATSSIAASTPAVA 330
BLAST of NO18G01270 vs. NCBI_GenBank
Match: XP_024572997.1 (atp-binding cassette superfamily [Plasmopara halstedii] >CEG36628.1 atp-binding cassette superfamily [Plasmopara halstedii]) HSP 1 Score: 83.6 bits (205), Expect = 1.200e-12 Identity = 55/207 (26.57%), Postives = 103/207 (49.76%), Query Frame = 0 Query: 76 WLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIF----KAKSKGSQILEIIGIVSIFLVLVCGGYYGRKYVRQINAEKEAEMAAVAPAT 279 WL+ +G A++ F+++ + + +L++G+++G G +L+ KLL + L+Y+ GRY+ R + +Y R + L L+ +R L R++ P A+K+YGL + +F AL+ S++ G +++ A + ++ IL ++G S L+L GYY RKYV ++ E++ E AT Sbjct: 68 WLQVHEALGAALYVCSFTCFVVLCFPSTVFELLAGYIFGLWLGLLLATTGKLLGSVLSYVIGRYMCRHRVHSYMARGHPALQGFQSLLRKRQILIVFLTRVAFFPIAIKNYGLSVLDVRFSVYFAAALLTGLPFSFIWVYSGHAVENVAALLVSPTASRHSTEGILLLVGAGSALLLLFMVGYYSRKYVLELAKEEQDEKTMAVDAT 274
BLAST of NO18G01270 vs. NCBI_GenBank
Match: POM74935.1 (ABC Superfamily [Phytophthora palmivora var. palmivora]) HSP 1 Score: 78.6 bits (192), Expect = 3.900e-11 Identity = 62/228 (27.19%), Postives = 111/228 (48.68%), Query Frame = 0 Query: 55 LIGFALLSGTVLRQPIMDSE-----TWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMAL---LSWV-----LADLGAKLKDPADIFKAKSKGSQILEIIGIVSIFLVLVCGGYYGRKYVRQINAEKEA 270 L+ L +G +L + + + WL+ +G AV+ F+++ + +L++G+++G G +L+ KL+ + L+Y GRYL R + Y R + L L+ +R L R++ P AVK+YGL ++ D P + A ++ L + WV + + A L PA ++ IL ++G S L+L G+Y RKYV ++ E++A Sbjct: 36 LVALGLTAGLLLFRFVRSDDFDLVVHWLQTHEALGAAVYVSSFTCFVVLCFPSTAFELLAGYIFGFWLGLLLATTGKLVGSVLSYGIGRYLCRRRVHAYMSRGHPALQGFQSLLRKRQILVVFLTRVAFFPIAVKNYGL-SVLDVRFPVYFAAALLTGLPFSVIWVYSGHAVENFTALLASPA---ASRHSTEMILLLVGAGSALLLLFVVGFYTRKYVLELAQEEDA 259
BLAST of NO18G01270 vs. NCBI_GenBank
Match: XP_002899934.1 (ATP-binding Cassette (ABC) superfamily [Phytophthora infestans T30-4] >EEY60561.1 ATP-binding Cassette (ABC) superfamily [Phytophthora infestans T30-4]) HSP 1 Score: 77.0 bits (188), Expect = 1.100e-10 Identity = 61/218 (27.98%), Postives = 108/218 (49.54%), Query Frame = 0 Query: 76 WLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMAL---LSWV-----LADLGAKLKDPADIFKAKSKGSQILEIIGIVSIFLVLVCGGYYGRKYVRQI-NAEKEAE-MAAVAPATSDDGS 284 WL+ T+G A++ F+++ + +L++G+++G G +L+ KL+ + L+Y+ GRYL R + Y + + L L+ +R L R++ P A+K+YGL ++ D P + A ++ L WV + + A L PA ++ +L ++G S L+L G Y RKYV + EK+A+ AA P +DD + Sbjct: 62 WLQTHETIGAALYVCSFTCFVVLCFPSTAFELLAGYIFGLWLGLLLATTGKLVGSVLSYVIGRYLCRRRVHAYMAQGHPALQGFQSLLRKRQILVVFLTRVAFFPIAIKNYGL-SVLDVRFPVYFAAALLTGLPFSFIWVYSGHAVENFTALLASPA---ASRHSTEMVLLLVGAGSALLLLFVVGLYTRKYVLDLAEEEKDADTTAADTPKRTDDAT 275
BLAST of NO18G01270 vs. NCBI_GenBank
Match: OQR97875.1 (ATP-binding Cassette (ABC) superfamily [Achlya hypogyna]) HSP 1 Score: 76.3 bits (186), Expect = 2.000e-10 Identity = 52/208 (25.00%), Postives = 99/208 (47.60%), Query Frame = 0 Query: 75 TWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAK--------LKDPADIFKAKSKGSQILEIIGIVSIFLVLVCGGYYGRKYVRQINAEKEAEMAAV 275 TWL++ TVG +F +V I++ + + DL +G+ +G + G ++ K+L + A+ GRYL++D + A A+L+E Q +L++L+ +P A+K+YGL + F L++ + S++ LG + DP Q L I+ S +++ GY R Y ++A+++ ++ V Sbjct: 61 TWLQEHNTVGGGIFALVYAFCIIVCCPSTIFDLFAGYTFGVRWGTAVAVTGKVLGSVTAFAVGRYLIQDHVRAKLDAGRPMFRAWARLIERHEVQFVVLIQLAYLPIALKNYGLSILDVSFAAFALSTLVIGGIESYLSVVLGHSTTKISAILVADPVAHTPESHAAQQALVIVAAASTLGLVLFLGYRIRAYFEAVSADEDDKLITV 268
BLAST of NO18G01270 vs. NCBI_GenBank
Match: GAX95225.1 (Hypothetical protein PINS_003101 [Pythium insidiosum]) HSP 1 Score: 76.3 bits (186), Expect = 2.000e-10 Identity = 60/253 (23.72%), Postives = 123/253 (48.62%), Query Frame = 0 Query: 36 EGQKKTCMAKARGWIFLAFLIGFAL-LSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKSKGSQ----ILEIIGIVSIFLVLVCGGYYGRK----YVRQINAEKEAEMAAVAPATS 280 E +K+ A R + +I AL LS ++Q ++++ W+K+ +G V+ W+ I + + L + ++G+++G G I+ K + LA+L GR+L ++++ Y + A++ ++ + W+ IL +LS IP VK YGL F + + S + A++G++ D A + +S+ S+ +L +V++F ++ Y R+ R+ +++E E +A T+ Sbjct: 95 EARKRRRQALRRLAALILGIIALALILSRLPIKQYLVETAQWIKEHTFLGTFAAIVLFWIAIPLCFPSTLGEAVAGYLFGVPHGIIVIVFGKSGGSLLAFLLGRHLGKEVIGGYLATRFPTFRALSDVLNSKSWKPLILFQLSSIPNLVKCYGLSVTDISAWRFVVSSTVAGFPHSVLWANIGSQANDIAAVLSGQSEMSREKVFLLTCSAVVTVFAMVFLVVYTKRELQELQKRECGSDEELEPGTIAVETA 347
BLAST of NO18G01270 vs. NCBI_GenBank
Match: GBG30522.1 (Golgi apparatus membrane protein tvp38 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 71.6 bits (174), Expect = 4.800e-9 Identity = 44/168 (26.19%), Postives = 82/168 (48.81%), Query Frame = 0 Query: 72 DSETWLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKSKGSQILEI 240 D+ ++ QG +G + + ++I ++++++ GF+YG K GF +S V K+L TL++L R + L +FF Y + + K VEE +++RLS +P K+YG+ + F + + S + A LGA +D I + + +L + Sbjct: 85 DAIALIEAQGEMGPVYYTIFLAIWIACLLPCSIVEVVPGFLYGVKVGFAVSLVGKILGATLSFLVCRTFFKAALKRWFFDNYPTIRVVGKAVEEEGLPVLVVVRLSYVPMIFKNYGISVLDVDFARFAASSALAGVPFSLLWASLGASSRDLQSILRGERSLHDMLPV 252
BLAST of NO18G01270 vs. NCBI_GenBank
Match: KOO27684.1 (chloride channel protein clc-d [Chrysochromulina sp. CCMP291]) HSP 1 Score: 70.5 bits (171), Expect = 1.100e-8 Identity = 46/153 (30.07%), Postives = 82/153 (53.59%), Query Frame = 0 Query: 82 TVGLAVFGVVS-WVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFF--REYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKS 232 TV LA G + W ++ I+L+ G+++G G+ ++Y K LS+T++Y+ GR +LR L + ++ L+A V ERP+ + L+R++ +P ++K+YG+ I P F+ V S++L LGA KD D+ ++ Sbjct: 46 TVMLATIGFATVWSLLL---PTTPIELLMGYLFGIAQGWAINYFCKFLSSTISYVLGRTVLRAWLHGLWLSSAKHELLSAFEAEVSERPFSTAFLMRVAYVPISIKNYGMALIGVPTAAFYAAFFSVEFFESYLLIALGAGAKDLHDLLSGQA 195
BLAST of NO18G01270 vs. NCBI_GenBank
Match: XP_012204038.1 (hypothetical protein SPRG_09446 [Saprolegnia parasitica CBS 223.65] >KDO25172.1 hypothetical protein SPRG_09446 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 69.3 bits (168), Expect = 2.400e-8 Identity = 57/230 (24.78%), Postives = 105/230 (45.65%), Query Frame = 0 Query: 52 LAFLIGFALLSGTVLRQPIMDSET----WLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVE--ERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKSKGS---QILEIIGIVSIFLVLVCGGYYGRKYVRQI-NAEKEAEM 272 LA L+G A+ G + S WL+ G ++ ++ +++ A L +L++G+V+G G+ +S V K + L++ GRY L ++ A+ L+ + W+ L R++ +P A+K+YGL + P FF LI+ + LG + + + K + S +L IG S +L GY RKY+ ++ AE++ ++ Sbjct: 9 LAVLVGAAIAVGVLWHSASSSSFNHSVHWLRAHPATGGLLYTLLYTCCVVLCLPATLFELVAGYVFGFWGGWAISIVGKTAGSCLSFYIGRYFLHARVLRVLESGAPMFRALGLLLSRPDMKWKIVCLARVAWMPIAIKNYGLSVLPVPFPMFFWSTLILGTPFGGISCYLGHSATEVSSLLSGKHESSCFKFVLMAIGATSGLTLLCLVGYQTRKYIEELAAAERDGDL 238
BLAST of NO18G01270 vs. NCBI_GenBank
Match: XP_008620873.1 (hypothetical protein SDRG_16441 [Saprolegnia diclina VS20] >EQC25703.1 hypothetical protein SDRG_16441 [Saprolegnia diclina VS20]) HSP 1 Score: 68.9 bits (167), Expect = 3.100e-8 Identity = 55/230 (23.91%), Postives = 105/230 (45.65%), Query Frame = 0 Query: 52 LAFLIGFALLSGTVLRQPIMDSET----WLKDQGTVGLAVFGVVSWVFIMIGGSANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFFREYVWLAAMAKLVE--ERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFTCALIVMALLSWVLADLGAKLKDPADIFKAKSKGSQ---ILEIIGIVSIFLVLVCGGYYGRKYVRQI-NAEKEAEM 272 LA L+G A+ G + S WL+ G ++ ++ +++ A L +L++G+++G G+++S V K + L++ GRY L ++ A+ L+ + W+ L R++ +P A+K+YGL + P FF LI+ + LG + + + K + IL +G S +L GY RKY+ ++ AE++ ++ Sbjct: 8 LAVLVGAAIAVGVLWHSASSSSFNHSVHWLRAHPATGGLLYILLYTCCVVLCLPATLFELVAGYIFGFWGGWVISIVGKTTGSCLSFYIGRYFLHARVLRILESGAPMFRALGLLLSRPDMKWKIVCLARVAWMPIAIKNYGLSVLPVPFPMFFWSTLILGTPFGGISCYLGHSATEVSSLLSGKHESGYFKVILMAVGATSGLTLLCLVGYQTRKYIEELAAAERDGDL 237 The following BLAST results are available for this feature:
BLAST of NO18G01270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 16
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G01270 ID=NO18G01270|Name=NO18G01270|organism=Nannochloropsis oceanica|type=gene|length=1116bpback to top protein sequence of NO18G01270.1 >NO18G01270.1-protein ID=NO18G01270.1-protein|Name=NO18G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bpback to top Synonyms
Publications
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