NO18G01180, NO18G01180 (gene) Nannochloropsis oceanica

Overview
NameNO18G01180
Unique NameNO18G01180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1590
Alignment locationchr18:408453..410042 +

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Properties
Property NameValue
DescriptionSubtilisin-like serine peptidase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:408453..410042 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008236serine-type peptidase activity
GO:0008233peptidase activity
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Homology
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BLAST of NO18G01180 vs. NCBI_GenBank
Match: XP_005852545.1 (subtilisin-like serine peptidase [Nannochloropsis gaditana CCMP526] >EKU23286.1 subtilisin-like serine peptidase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 109.4 bits (272), Expect = 2.500e-20
Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 0 
Query:  207 TLAWIEPEVSPGAFRIVLHDLDLVASLDSQGLPIKKIYPNTLQKPDNLNVLENIRLQTPTPGDVITVNVTGTSITMTDKHAYSLVVSGPFVSVAWYCQNNDNGKNGGPWDASWRTEFCTLPCVGR-FMKRPLCCETLGGRRGSMLRDGHTCLPSLANASKCIGLTPPQEC 376
            TL WI+P+ +  +   VLHDLDL+     +G      +PN     DN+N +E + L +PTPGD +TV VT TS+    +  Y+L  SG FVS AWYCQ+  + + G      + TE C   C    F+K P+CC+   G     +        + A   +C   T P EC
Sbjct:  797 TLVWIDPDTTASSATTVLHDLDLMVYSQKEG---SSYFPNGRTNADNVNTVEKVALYSPTPGDTLTVTVTATSVATRPEQRYALAASGNFVSGAWYCQSPRSSRAG----EVFTTENCDQSCDNNGFLKEPVCCDASAG----SVCSAQEIAAAAAVGLECDAATRPIEC 955
[Close]
BLAST of NO18G01180 vs. NCBI_GenBank
Match: EWM27126.1 (peptidase s8 and s53, partial [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 2.500e-20
Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 0 
Query:  207 TLAWIEPEVSPGAFRIVLHDLDLVASLDSQGLPIKKIYPNTLQKPDNLNVLENIRLQTPTPGDVITVNVTGTSITMTDKHAYSLVVSGPFVSVAWYCQNNDNGKNGGPWDASWRTEFCTLPCVGR-FMKRPLCCETLGGRRGSMLRDGHTCLPSLANASKCIGLTPPQEC 376
            TL WI+P+ +  +   VLHDLDL+     +G      +PN     DN+N +E + L +PTPGD +TV VT TS+    +  Y+L  SG FVS AWYCQ+  + + G      + TE C   C    F+K P+CC+   G     +        + A   +C   T P EC
Sbjct:  222 TLVWIDPDTTASSATTVLHDLDLMVYSQKEG---SSYFPNGRTNADNVNTVEKVALYSPTPGDTLTVTVTATSVATRPEQRYALAASGNFVSGAWYCQSPRSSRAG----EVFTTENCDQSCDNNGFLKEPVCCDASAG----SVCSAQEIAAAAAVGLECDAATRPIEC 380
The following BLAST results are available for this feature:
BLAST of NO18G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852545.12.500e-2035.29subtilisin-like serine peptidase [Nannochloropsis ... [more]
EWM27126.12.500e-2035.29peptidase s8 and s53, partial [Nannochloropsis gad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01180.1NO18G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01180.1NO18G01180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01180 ID=NO18G01180|Name=NO18G01180|organism=Nannochloropsis oceanica|type=gene|length=1590bp
ATGGCAATACGTCGACTCTTGACGTTGCTTTCCCTCCTCCTTCTGGCCTT
GTGCTCTTCAGCGGCCAAGCGGCACCAGCAACCCAGCCCCCATATCGAGG
AAGAATATGATCCCTTGACTACGCCTCATCACAAAACCACGGCGACCACT
TCACGAAACACGACAACGACCGCAACGCCAGgtgcatgcaggcagaccga
atcatctggcattttgccagtcgagggttacgtgacccggaattcaaacg
agatgtagacggccatcaacaccactttatttgatatcaccatccaccgc
tcgcttcgccttctccagaatgccgcacgtatcatgctcgcacgcaataa
gacgaccccgggcgcgcgtacaaaacaactacagGAAATTCTACCACGGT
GAATGCTACTAGCCACGCGTATAACCAAACCACTCCTGCTGCCAACCCGG
TGCCTCCGCGCGTAATAAACCTGACGGGCGAGCATATGCACCGTGTATTG
Ggtacgttcaggactgttggtggcaaacatgagtaggtgctacctgtttc
ttctgatatttacgctggagctgtatttgaccctcagggatgaagctggg
gtggaacaattgtcaccctgtatctttgaccattttttttcacttatggc
gttaattccttttcttttttccactgtgcagCTCGCTCCCACGGCAAAAA
ACAACAACCACCTGCGGCGCAGCAACAGCAGCCGAAGCAGGAGCAAGGCA
GCCCGCCGGGATTTGCGAATGGTACATTCCCGAATGCGACAGCCTCTGAC
GAGGGAGAAAGTGGAGATCCAGCGGTCTTTAAGAATGGAACTTCTGATAA
TTCAACAGCGACGCAAGAGGACACCGCGGGCGGTGCCGGTGGAGCTACTG
CAGGCGACACCATTATAAACGGGACCACTGCAAATAGAACGTCTTCTGTT
CAAATGGgtacgtctagtaacacgactaccagcaagcaatgaagcctcgg
ggtggatctgcagggatggaggcgaagtatcagTTGTACCGACGGGATCC
GACACGGTGATGAATGCGTTTGAGGCGACATTGGCATGGATTGAGCCTGA
GGTCTCGCCGGGGGCTTTCAGGATTGTGTTGCATGATCTCGACCTGGTGG
CCAGTCTGGACTCTCAGGGACTTCCTATCAAGAAAATATACCCCAACACT
CTCCAGAAGCCCGACAATCTGAACGTGCTCGAGAACATTCGCCTTCAGAC
CCCGACTCCGGGCGACGTGATTACGGTGAACGTCACGGGAACGTCCATTA
CGATGACAGATAAACATGCGTATTCTTTGGTTGTGAGTGGCCCCTTCGTA
TCCGTCGCGTGGTACTGTCAAAATAATGATAATGGGAAGAATGGGGGGCC
CTGGGATGCTTCGTGGAGAACGGAGTTCTGTACTCTGCCGTGCGTTGGAA
GATTCATGAAAAGGCCCTTGTGTTGTGAGACACTTGGTGGTCGACGTGGG
AGCATGTTAAGAGACGGTCATACGTGCCTACCATCACTGGCAAACGCCTC
TAAGTGCATAGGCCTGACACCCCCTCAAGAATGTGAGTAA
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protein sequence of NO18G01180.1

>NO18G01180.1-protein ID=NO18G01180.1-protein|Name=NO18G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MAIRRLLTLLSLLLLALCSSAAKRHQQPSPHIEEEYDPLTTPHHKTTATT
SRNTTTTATPGNSTTVNATSHAYNQTTPAANPVPPRVINLTGEHMHRVLA
RSHGKKQQPPAAQQQQPKQEQGSPPGFANGTFPNATASDEGESGDPAVFK
NGTSDNSTATQEDTAGGAGGATAGDTIINGTTANRTSSVQMVVPTGSDTV
MNAFEATLAWIEPEVSPGAFRIVLHDLDLVASLDSQGLPIKKIYPNTLQK
PDNLNVLENIRLQTPTPGDVITVNVTGTSITMTDKHAYSLVVSGPFVSVA
WYCQNNDNGKNGGPWDASWRTEFCTLPCVGRFMKRPLCCETLGGRRGSML
RDGHTCLPSLANASKCIGLTPPQECE*
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Synonyms
Publications