NO18G01180.1, NO18G01180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01180.1
Unique NameNO18G01180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr18:408453..410042 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:408453..410042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01180.1 vs.
Match: EWM27126.1 (peptidase s8 and s53, partial [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 2.500e-20
Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 0 
Query:  207 TLAWIEPEVSPGAFRIVLHDLDLVASLDSQGLPIKKIYPNTLQKPDNLNVLENIRLQTPTPGDVITVNVTGTSITMTDKHAYSLVVSGPFVSVAWYCQNNDNGKNGGPWDASWRTEFCTLPCVGR-FMKRPLCCETLGGRRGSMLRDGHTCLPSLANASKCIGLTPPQEC 376
            TL WI+P+ +  +   VLHDLDL+     +G      +PN     DN+N +E + L +PTPGD +TV VT TS+    +  Y+L  SG FVS AWYCQ+  + + G      + TE C   C    F+K P+CC+   G     +        + A   +C   T P EC
Sbjct:  222 TLVWIDPDTTASSATTVLHDLDLMVYSQKEG---SSYFPNGRTNADNVNTVEKVALYSPTPGDTLTVTVTATSVATRPEQRYALAASGNFVSGAWYCQSPRSSRAG----EVFTTENCDQSCDNNGFLKEPVCCDASAG----SVCSAQEIAAAAAVGLECDAATRPIEC 380
The following BLAST results are available for this feature:
BLAST of NO18G01180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27126.12.500e-2035.29peptidase s8 and s53, partial [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01180NO18G01180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01180.1NO18G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01180.1.cds1NO18G01180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01180.1.cds2NO18G01180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01180.1.cds3NO18G01180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01180.1.cds4NO18G01180.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01180.1 ID=NO18G01180.1|Name=NO18G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
ATGGCAATACGTCGACTCTTGACGTTGCTTTCCCTCCTCCTTCTGGCCTT
GTGCTCTTCAGCGGCCAAGCGGCACCAGCAACCCAGCCCCCATATCGAGG
AAGAATATGATCCCTTGACTACGCCTCATCACAAAACCACGGCGACCACT
TCACGAAACACGACAACGACCGCAACGCCAGGAAATTCTACCACGGTGAA
TGCTACTAGCCACGCGTATAACCAAACCACTCCTGCTGCCAACCCGGTGC
CTCCGCGCGTAATAAACCTGACGGGCGAGCATATGCACCGTGTATTGGCT
CGCTCCCACGGCAAAAAACAACAACCACCTGCGGCGCAGCAACAGCAGCC
GAAGCAGGAGCAAGGCAGCCCGCCGGGATTTGCGAATGGTACATTCCCGA
ATGCGACAGCCTCTGACGAGGGAGAAAGTGGAGATCCAGCGGTCTTTAAG
AATGGAACTTCTGATAATTCAACAGCGACGCAAGAGGACACCGCGGGCGG
TGCCGGTGGAGCTACTGCAGGCGACACCATTATAAACGGGACCACTGCAA
ATAGAACGTCTTCTGTTCAAATGGTTGTACCGACGGGATCCGACACGGTG
ATGAATGCGTTTGAGGCGACATTGGCATGGATTGAGCCTGAGGTCTCGCC
GGGGGCTTTCAGGATTGTGTTGCATGATCTCGACCTGGTGGCCAGTCTGG
ACTCTCAGGGACTTCCTATCAAGAAAATATACCCCAACACTCTCCAGAAG
CCCGACAATCTGAACGTGCTCGAGAACATTCGCCTTCAGACCCCGACTCC
GGGCGACGTGATTACGGTGAACGTCACGGGAACGTCCATTACGATGACAG
ATAAACATGCGTATTCTTTGGTTGTGAGTGGCCCCTTCGTATCCGTCGCG
TGGTACTGTCAAAATAATGATAATGGGAAGAATGGGGGGCCCTGGGATGC
TTCGTGGAGAACGGAGTTCTGTACTCTGCCGTGCGTTGGAAGATTCATGA
AAAGGCCCTTGTGTTGTGAGACACTTGGTGGTCGACGTGGGAGCATGTTA
AGAGACGGTCATACGTGCCTACCATCACTGGCAAACGCCTCTAAGTGCAT
AGGCCTGACACCCCCTCAAGAATGTGAGTAA
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protein sequence of NO18G01180.1

>NO18G01180.1-protein ID=NO18G01180.1-protein|Name=NO18G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MAIRRLLTLLSLLLLALCSSAAKRHQQPSPHIEEEYDPLTTPHHKTTATT
SRNTTTTATPGNSTTVNATSHAYNQTTPAANPVPPRVINLTGEHMHRVLA
RSHGKKQQPPAAQQQQPKQEQGSPPGFANGTFPNATASDEGESGDPAVFK
NGTSDNSTATQEDTAGGAGGATAGDTIINGTTANRTSSVQMVVPTGSDTV
MNAFEATLAWIEPEVSPGAFRIVLHDLDLVASLDSQGLPIKKIYPNTLQK
PDNLNVLENIRLQTPTPGDVITVNVTGTSITMTDKHAYSLVVSGPFVSVA
WYCQNNDNGKNGGPWDASWRTEFCTLPCVGRFMKRPLCCETLGGRRGSML
RDGHTCLPSLANASKCIGLTPPQECE*
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mRNA from alignment at chr18:408453..410042+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01180.1 ID=NO18G01180.1|Name=NO18G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp|location=Sequence derived from alignment at chr18:408453..410042+ (Nannochloropsis oceanica)
ATGGCAATACGTCGACTCTTGACGTTGCTTTCCCTCCTCCTTCTGGCCTT
GTGCTCTTCAGCGGCCAAGCGGCACCAGCAACCCAGCCCCCATATCGAGG
AAGAATATGATCCCTTGACTACGCCTCATCACAAAACCACGGCGACCACT
TCACGAAACACGACAACGACCGCAACGCCAGGTGCATGCAGGCAGACCGA
ATCATCTGGCATTTTGCCAGTCGAGGGTTACGTGACCCGGAATTCAAACG
AGATGTAGACGGCCATCAACACCACTTTATTTGATATCACCATCCACCGC
TCGCTTCGCCTTCTCCAGAATGCCGCACGTATCATGCTCGCACGCAATAA
GACGACCCCGGGCGCGCGTACAAAACAACTACAGGAAATTCTACCACGGT
GAATGCTACTAGCCACGCGTATAACCAAACCACTCCTGCTGCCAACCCGG
TGCCTCCGCGCGTAATAAACCTGACGGGCGAGCATATGCACCGTGTATTG
GGTACGTTCAGGACTGTTGGTGGCAAACATGAGTAGGTGCTACCTGTTTC
TTCTGATATTTACGCTGGAGCTGTATTTGACCCTCAGGGATGAAGCTGGG
GTGGAACAATTGTCACCCTGTATCTTTGACCATTTTTTTTCACTTATGGC
GTTAATTCCTTTTCTTTTTTCCACTGTGCAGCTCGCTCCCACGGCAAAAA
ACAACAACCACCTGCGGCGCAGCAACAGCAGCCGAAGCAGGAGCAAGGCA
GCCCGCCGGGATTTGCGAATGGTACATTCCCGAATGCGACAGCCTCTGAC
GAGGGAGAAAGTGGAGATCCAGCGGTCTTTAAGAATGGAACTTCTGATAA
TTCAACAGCGACGCAAGAGGACACCGCGGGCGGTGCCGGTGGAGCTACTG
CAGGCGACACCATTATAAACGGGACCACTGCAAATAGAACGTCTTCTGTT
CAAATGGGTACGTCTAGTAACACGACTACCAGCAAGCAATGAAGCCTCGG
GGTGGATCTGCAGGGATGGAGGCGAAGTATCAGTTGTACCGACGGGATCC
GACACGGTGATGAATGCGTTTGAGGCGACATTGGCATGGATTGAGCCTGA
GGTCTCGCCGGGGGCTTTCAGGATTGTGTTGCATGATCTCGACCTGGTGG
CCAGTCTGGACTCTCAGGGACTTCCTATCAAGAAAATATACCCCAACACT
CTCCAGAAGCCCGACAATCTGAACGTGCTCGAGAACATTCGCCTTCAGAC
CCCGACTCCGGGCGACGTGATTACGGTGAACGTCACGGGAACGTCCATTA
CGATGACAGATAAACATGCGTATTCTTTGGTTGTGAGTGGCCCCTTCGTA
TCCGTCGCGTGGTACTGTCAAAATAATGATAATGGGAAGAATGGGGGGCC
CTGGGATGCTTCGTGGAGAACGGAGTTCTGTACTCTGCCGTGCGTTGGAA
GATTCATGAAAAGGCCCTTGTGTTGTGAGACACTTGGTGGTCGACGTGGG
AGCATGTTAAGAGACGGTCATACGTGCCTACCATCACTGGCAAACGCCTC
TAAGTGCATAGGCCTGACACCCCCTCAAGAATGTGAGTAA
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Coding sequence (CDS) from alignment at chr18:408453..410042+

>NO18G01180.1 ID=NO18G01180.1|Name=NO18G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr18:408453..410042+ (Nannochloropsis oceanica)
ATGGCAATACGTCGACTCTTGACGTTGCTTTCCCTCCTCCTTCTGGCCTT
GTGCTCTTCAGCGGCCAAGCGGCACCAGCAACCCAGCCCCCATATCGAGG
AAGAATATGATCCCTTGACTACGCCTCATCACAAAACCACGGCGACCACT
TCACGAAACACGACAACGACCGCAACGCCAGGAAATTCTACCACGGTGAA
TGCTACTAGCCACGCGTATAACCAAACCACTCCTGCTGCCAACCCGGTGC
CTCCGCGCGTAATAAACCTGACGGGCGAGCATATGCACCGTGTATTGGCT
CGCTCCCACGGCAAAAAACAACAACCACCTGCGGCGCAGCAACAGCAGCC
GAAGCAGGAGCAAGGCAGCCCGCCGGGATTTGCGAATGGTACATTCCCGA
ATGCGACAGCCTCTGACGAGGGAGAAAGTGGAGATCCAGCGGTCTTTAAG
AATGGAACTTCTGATAATTCAACAGCGACGCAAGAGGACACCGCGGGCGG
TGCCGGTGGAGCTACTGCAGGCGACACCATTATAAACGGGACCACTGCAA
ATAGAACGTCTTCTGTTCAAATGGTTGTACCGACGGGATCCGACACGGTG
ATGAATGCGTTTGAGGCGACATTGGCATGGATTGAGCCTGAGGTCTCGCC
GGGGGCTTTCAGGATTGTGTTGCATGATCTCGACCTGGTGGCCAGTCTGG
ACTCTCAGGGACTTCCTATCAAGAAAATATACCCCAACACTCTCCAGAAG
CCCGACAATCTGAACGTGCTCGAGAACATTCGCCTTCAGACCCCGACTCC
GGGCGACGTGATTACGGTGAACGTCACGGGAACGTCCATTACGATGACAG
ATAAACATGCGTATTCTTTGGTTGTGAGTGGCCCCTTCGTATCCGTCGCG
TGGTACTGTCAAAATAATGATAATGGGAAGAATGGGGGGCCCTGGGATGC
TTCGTGGAGAACGGAGTTCTGTACTCTGCCGTGCGTTGGAAGATTCATGA
AAAGGCCCTTGTGTTGTGAGACACTTGGTGGTCGACGTGGGAGCATGTTA
AGAGACGGTCATACGTGCCTACCATCACTGGCAAACGCCTCTAAGTGCAT
AGGCCTGACACCCCCTCAAGAATGTGAGTAA
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Synonyms
Publications