NO18G01170, NO18G01170 (gene) Nannochloropsis oceanica

Overview
NameNO18G01170
Unique NameNO18G01170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1355
Alignment locationchr18:407022..408376 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:407022..408376 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009858DUF1415
Homology
BLAST of NO18G01170 vs. NCBI_GenBank
Match: EWM23316.1 (Protein of unknown function DUF1415 [Nannochloropsis gaditana])

HSP 1 Score: 277.3 bits (708), Expect = 5.700e-71
Identity = 151/265 (56.98%), Postives = 189/265 (71.32%), Query Frame = 0
Query:   34 HTIRPFTSSILAPSLPTIKAGRKRPR-PIFPEALSTVDRMKKLRAQARLDKGMEDDDGGESDACADAPISEPSVELPISASHHATIVKWLQDLVIGFKLCPWAGPALNANAIRIVVHPEESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVPGSTLADFQDFLDVAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPILHLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLIEACRQ 298
            H+ RP      + +L +  A R+  +  +FP+ALS ++RM+ LRA+A+L    ED D   S A   A    PS   P S  H  TI+ W+Q +VI FKLCPWA PAL AN ++IVV P  SSL  L E  ++EASLLA+M + PE+QNLTTLIGVPG  L+DFQDFLD+   VD+ LDEL LRGKVQ+ASFHPD+ F DS  G DVENFTNRSP+PILHLLREVEVSRAL GY+GDP+ IYERNK  M+EAGAE+L+ ++ AC++
Sbjct:   42 HSRRPSPQPACSATLSSSSAKRQEAKGKMFPDALSPIERMQLLRARAQL----EDGDLPVSKAEQHASSDPPSFVNP-SEVHRHTILNWVQSMVIDFKLCPWASPALKANELKIVVAPVSSSLHGLLENVVEEASLLASMSERPEDQNLTTLIGVPGPLLSDFQDFLDLVAVVDECLDELDLRGKVQVASFHPDFAFEDS-TGDDVENFTNRSPLPILHLLREVEVSRALGGYLGDPACIYERNKITMKEAGAEQLRAVLTACQR 300          
BLAST of NO18G01170 vs. NCBI_GenBank
Match: CBN74358.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 142.1 bits (357), Expect = 2.900e-30
Identity = 83/225 (36.89%), Postives = 117/225 (52.00%), Query Frame = 0
Query:  119 VKWLQDLVIGFKLCPWAGPALNANAIRIVVHPEESS---------------------------------LEVLFETAIKEASLLATMPDGPEEQNLTTLIGVPGSTLADFQDFLDVAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPILHLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLIEACRQHESLSASTDESSR 311
            ++W++  VIG  LCPWA  AL    +R++VHP +                                   LE L E A  EA  L+ +  G    N TTL+         F++FL VAG VD+F+DE  LRGKVQLA+FHP YRF  S    D  N+TNRSP P+LHLL E +VS A++  + DP++++ERN    R+ G E +++ +EAC    S    T + ++
Sbjct:  128 LRWIRSTVIGLNLCPWAAGALVGGQLRVLVHPAQQPLPAATDYQERLPGSDVGGGVSKDSGASSDAADLLEGLVEVATGEAVALSAL-GGEAAANATTLVVARPPLAQGFEEFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEED-DASNYTNRSPYPVLHLLLEDQVSAAVE-QISDPAKVWERNVDTTRKLGVEAMRRGVEACLVPSSPPQQTPKEAK 349          
BLAST of NO18G01170 vs. NCBI_GenBank
Match: WP_027832837.1 (DUF1415 domain-containing protein [Marinobacter sp. HL-58] >KPP99941.1 uncharacterized protein HLUCCO03_16560 [Marinobacter sp. HL-58])

HSP 1 Score: 132.9 bits (333), Expect = 1.700e-27
Identity = 78/177 (44.07%), Postives = 111/177 (62.71%), Query Frame = 0
Query:  120 KWLQDLVIGFKLCPWAGPALNANAIRIVVHPEESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVPGSTLADFQDFLDVAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPILHLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLIEACR 297
            +WL+++VIG  LCP+A   L  N +R VV P ES  E+L +    +A  L  + + PE +  TTL+  PG  L++F D+ +     D  L+ L+L G  Q+ASFHPDYRFA +  G D EN+TNRSP P+LHLLRE  V+RA+D +  DP  I  RN A+M E GA+++++ +   R
Sbjct:   12 QWLEEVVIGLNLCPFARKELVNNRVRFVVSPAESEEELLGDL---QAEFL-FLDEHPEVE--TTLLVHPG-VLSEFDDYNEFLAAADGLLELLELDGVYQVASFHPDYRFAGTGDG-DAENYTNRSPFPMLHLLREDSVARAVDSH-PDPEAIPRRNIALMEELGADEMRQRLSRLR 179          
BLAST of NO18G01170 vs. NCBI_GenBank
Match: WP_061333076.1 (DUF1415 domain-containing protein [Marinobacter excellens] >KXO07821.1 hypothetical protein J122_3173 [Marinobacter excellens LAMA 842])

HSP 1 Score: 132.9 bits (333), Expect = 1.700e-27
Identity = 78/184 (42.39%), Postives = 110/184 (59.78%), Query Frame = 0
Query:  120 KWLQDLVIGFKLCPWAGPALNANAIRIVV---HPEESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVPGSTLADFQDFLDVAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPILHLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLIEACRQHES 301
            KW++D+V+G+ LCP+A   L  N +R  V   + E+  L+ L        + L  + D PE +  TTL+  PG  L DF  + +     D  L  L+L G  Q+ASFHPDY+FAD+ PGAD EN+TNRSP P+LHLLRE  +  A+D +  D   I +RN A+M E GAEK++  + +C +H S
Sbjct:   12 KWVEDVVVGYNLCPFAKRELVKNRVRFTVTDANNEDDLLQALH-------AELQRLEDEPEIE--TTLLIHPG-VLQDFYAYNEFLDAADALLAYLELEGVYQIASFHPDYQFADTEPGAD-ENYTNRSPYPMLHLLREASLEAAIDSH-PDVDGIPDRNIALMNELGAEKMRNTLLSCLEHAS 183          
BLAST of NO18G01170 vs. NCBI_GenBank
Match: AHG64366.1 (hypothetical protein MIM_c22910 [Advenella mimigardefordensis DPN7])

HSP 1 Score: 131.7 bits (330), Expect = 3.900e-27
Identity = 77/176 (43.75%), Postives = 110/176 (62.50%), Query Frame = 0
Query:  120 KWLQDLVIGFKLCPWAGPALNANAIRIVVHPEESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVP--GSTLADFQDFLDVAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPILHLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLIE 294
            +WL+  VIG  LCP+A      + +RI +   + S + L     +E   LA   + P +Q  TTL+ VP      +DF D+L +A  V   LD+L+L G++QLASFHP Y+FAD+ PG D+ N+TNR+P PILHLLRE  + +A + Y  DPS I+ERN AV++E G E  Q+L++
Sbjct:   16 RWLEKAVIGLNLCPFAKSVYVKDQVRIAICQAQDS-QALTAQLYEELQWLA---NTPAQQTDTTLLVVPCMFEAFSDFNDYLHIAEAV---LDDLELIGEIQLASFHPLYQFADTEPG-DLSNYTNRAPYPILHLLREDSLDKAAEQY-PDPSVIFERNIAVVQELGVEGWQRLLQ 182          
BLAST of NO18G01170 vs. NCBI_GenBank
Match: WP_025373008.1 (DUF1415 domain-containing protein [Advenella mimigardefordensis])

HSP 1 Score: 131.7 bits (330), Expect = 3.900e-27
Identity = 77/176 (43.75%), Postives = 110/176 (62.50%), Query Frame = 0
Query:  120 KWLQDLVIGFKLCPWAGPALNANAIRIVVHPEESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVP--GSTLADFQDFLDVAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPILHLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLIE 294
            +WL+  VIG  LCP+A      + +RI +   + S + L     +E   LA   + P +Q  TTL+ VP      +DF D+L +A  V   LD+L+L G++QLASFHP Y+FAD+ PG D+ N+TNR+P PILHLLRE  + +A + Y  DPS I+ERN AV++E G E  Q+L++
Sbjct:   13 RWLEKAVIGLNLCPFAKSVYVKDQVRIAICQAQDS-QALTAQLYEELQWLA---NTPAQQTDTTLLVVPCMFEAFSDFNDYLHIAEAV---LDDLELIGEIQLASFHPLYQFADTEPG-DLSNYTNRAPYPILHLLREDSLDKAAEQY-PDPSVIFERNIAVVQELGVEGWQRLLQ 179          
BLAST of NO18G01170 vs. NCBI_GenBank
Match: WP_066637693.1 (DUF1415 domain-containing protein [Bordetella sp. H567] >AOB31766.1 peptidase [Bordetella sp. H567])

HSP 1 Score: 131.0 bits (328), Expect = 6.600e-27
Identity = 86/181 (47.51%), Postives = 103/181 (56.91%), Query Frame = 0
Query:  115 HATIV---KWLQDLVIGFKLCPWAGPALNANAIRIVVHPEESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVPGSTLADFQDFLDVAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPILHLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLI 293
            HA I     WL   VIG  LCP+A      + IR V      +  V  +   +E  LLA   D   E   TTLI +P S L DF D+ D  G  D  L  L+LRG +Q+ASFHPDY+FADS P  D+EN TNRSP PILHLLRE  V+RA+D Y  DP  IYERN+  MR  G E  + L+
Sbjct:    9 HAAIAATRAWLTRAVIGLNLCPFAKAVHVKDQIRYVASAATDADGVAADLE-RELRLLA---DSDAETIDTTLIILP-SALQDFGDYNDFLGRGDRLLKRLRLRGVLQIASFHPDYQFADSAPD-DIENCTNRSPYPILHLLREESVARAVDAY-PDPDDIYERNQQTMRRLGWEGWRALM 182          
BLAST of NO18G01170 vs. NCBI_GenBank
Match: WP_090320763.1 (DUF1415 domain-containing protein [Duganella sp. CF517] >SEO02042.1 hypothetical protein SAMN05428959_104225 [Duganella sp. CF517])

HSP 1 Score: 131.0 bits (328), Expect = 6.600e-27
Identity = 80/187 (42.78%), Postives = 111/187 (59.36%), Query Frame = 0
Query:  111 SASHHATI----VKWLQDLVIGFKLCPWAGPALNANAIRIVVHPEESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVPGSTLADFQDFLDVAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPILHLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLIE 294
            SA+ HA +    V WL+  VIG  LCP+A        IR VV   ++  E L E  ++E   LA   D   EQ  TTL+  P   LADF+D+ +     D  L++LQL G++Q+ASFHPDY+FAD+    D+EN+TNRSP P LHLLRE  V RA++ +  + + I+E+N A +R  G +   KL+E
Sbjct:    4 SATDHAAVVANTVAWLEKAVIGLNLCPFAKAVHVKGQIRYVVSDADTP-EALLEKLMEELQYLA---DADPEQVDTTLLIHP-RVLADFEDYNEFLDVADAALEDLQLDGELQVASFHPDYQFADTHKN-DIENYTNRSPYPTLHLLREDSVERAVEAF-PEAADIFEKNIATLRALGHDAWDKLLE 183          
BLAST of NO18G01170 vs. NCBI_GenBank
Match: WP_072676601.1 (DUF1415 domain-containing protein [Marinobacter hydrocarbonoclasticus] >OJS99603.1 hypothetical protein BEE62_05625 [Marinobacter hydrocarbonoclasticus])

HSP 1 Score: 130.6 bits (327), Expect = 8.600e-27
Identity = 76/179 (42.46%), Postives = 107/179 (59.78%), Query Frame = 0
Query:  120 KWLQDLVIGFKLCPWAGPALNANAIRIVV---HPEESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVPGSTLADFQDFLDVAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPILHLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLIEAC 296
            KW++D+V+G+ LCP+A   L  N +R  V   + E+  L+ L        + L  + D PE +  TTL+  PG  L DF  + +     D  L  L+L G  Q+ASFHPDY+FA++ PGAD EN+TNRSP P+LHLLRE  +  A+D Y  D   I +RN A+M E GAEK++ ++  C
Sbjct:   12 KWVEDVVVGYNLCPFAKRELVKNRVRFTVTDANNEDDLLQALH-------AELQRLEDEPEIE--TTLLIHPG-VLQDFYAYNEFLDAADALLAYLELEGVYQIASFHPDYQFAETEPGAD-ENYTNRSPYPMLHLLREASLEAAIDSY-PDVDGIPDRNIALMNELGAEKMRSILANC 178          
BLAST of NO18G01170 vs. NCBI_GenBank
Match: WP_088556640.1 (DUF1415 domain-containing protein [Marinobacter sp. es.042] >SNB54568.1 hypothetical protein SAMN04487880_0384 [Marinobacter sp. es.042])

HSP 1 Score: 130.2 bits (326), Expect = 1.100e-26
Identity = 74/176 (42.05%), Postives = 106/176 (60.23%), Query Frame = 0
Query:  120 KWLQDLVIGFKLCPWAGPALNANAIRIVVHPEESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVPGSTLADFQDFLDVAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPILHLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLIEAC 296
            KW++D+V+G+ LCP+A   L  N +R VV   E+  E+L        S L  + D PE +  TTL+  PG  L DF  + +     D  L  L++ G  Q+ASFHPDY+FA + P A  EN+TNRSP P+LHLLRE  +  A+D Y  D   I +RN  +M + GAEK+Q+++++C
Sbjct:   12 KWVEDVVVGYNLCPFAKRELVRNRVRFVVSEAETEDELLQAL----HSELQRLEDEPEIE--TTLLIHPG-VLQDFGPYNEFLDAADGLLAYLEMEGVYQIASFHPDYQFAGTEPDA-AENYTNRSPFPMLHLLREASLEAAIDSY-PDVDAIPQRNIELMEKLGAEKMQRILKSC 178          
The following BLAST results are available for this feature:
BLAST of NO18G01170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23316.15.700e-7156.98Protein of unknown function DUF1415 [Nannochlorops... [more]
CBN74358.12.900e-3036.89conserved unknown protein [Ectocarpus siliculosus][more]
WP_027832837.11.700e-2744.07DUF1415 domain-containing protein [Marinobacter sp... [more]
WP_061333076.11.700e-2742.39DUF1415 domain-containing protein [Marinobacter ex... [more]
AHG64366.13.900e-2743.75hypothetical protein MIM_c22910 [Advenella mimigar... [more]
WP_025373008.13.900e-2743.75DUF1415 domain-containing protein [Advenella mimig... [more]
WP_066637693.16.600e-2747.51DUF1415 domain-containing protein [Bordetella sp. ... [more]
WP_090320763.16.600e-2742.78DUF1415 domain-containing protein [Duganella sp. C... [more]
WP_072676601.18.600e-2742.46DUF1415 domain-containing protein [Marinobacter hy... [more]
WP_088556640.11.100e-2642.05DUF1415 domain-containing protein [Marinobacter sp... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003974NSK003974Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01170.1NO18G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609046gene_9526Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100053g13gene7122Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01170.1NO18G01170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01170 ID=NO18G01170|Name=NO18G01170|organism=Nannochloropsis oceanica|type=gene|length=1355bp
TGAGGTAATTTATAAAAAATAAATCCCCGAAAAGAATCGTTAAAAATGCA
GTGCCGGTCTGGTAACTTATGATGGAGCCAAATGACTTGGGGGCGTACAG
AGCGGCGCCAATAGTATCCGACAAAGCAAGTCAATGTTTTGGTAGGAATA
CACGTGTAAATAGCATAACGATATAATTTCTGACTGTCAAGAAAGGAATT
TGCCTTGTAGCACGCTCCTCGCCGCTCCTTCCACAAACTTTGAAGGCGCG
TCCAAGTCCCCAACGCCTTTTGCCAGCAGTGCCTTCCTGCTGCCAACGGC
CGGTCTTCAAATGCCACCTTCACCCTTGCTAGTATCACGAATCACGAATC
AAAGCAAGCCACTCAATACCTCCTCGACACAGGCGAATGATGGTGCGGCG
CCTCCTCATCACCGCGGCCGCCGCTGCATCGAGCACTATGACGCGTGTCC
CCGTTCTTGCCTGGACAGGCCCCCCACCATCCCACCACACTATCCGGCCA
TTCACAAGTAGCATTCTTGCGCCATCGCTCCCCACGATCAAGGCCGGCCG
GAAACGTCCGCGGCCTATCTTTCCAGAAGCGCTTTCTACTGTGGATCGTA
TGAAAAAGTTAAGGGCACAGGCGCGATTGGATAAGGGCATGGAGGACGAC
GACGGCGGTGAAAGCGACGCATGTGCTGATGCGCCCATCTCGGAACCATC
AGTCGAATTGCCTATATCCGCTTCTCATCACGCCACCATCGTCAAATGGC
TGCAGGACCTGGTGATCGGATTCAAACTTTGTCCATGGGCTGGTCCTGCA
CTGAATGCAAATGCCATCAGAATCGTGGTCCACCCCGAAGAATCAAGTCT
TGAAGTGCTCTTCGAGACAGCAATAAAGGAAGCCTCTCTCCTTGCAACCA
TGCCTGATGGGCCAGAGGAACAGAACCTCACGACGCTCATTGGTGTGCCG
GGATCAACGTTGGCTGACTTTCAGGACTTTCTAGACGTGGCAGGGACAGT
TGACGACTTCTTAGACGAACTCCAACTTCGCGGGAAAGTGCAGCTTGCCT
CTTTCCATCCCGATTACAGGTTTGCTGACTCAAGGCCGGGGGCAGACGTG
GAAAATTTCACGAATCGAAGCCCGATGCCTATCTTGCATTTGTTGAGGGA
AGTCGAGGTGAGTCGCGCATTGGATGGGTATGTGGGTGATCCTTCACGGA
TATATGAACGCAACAAGGCTGTGATGCGGGAGGCGGGTGCTGAGAAATTG
CAAAAATTGATTGAGGCCTGTAGGCAACACGAATCACTATCAGCATCAAC
AGATGAGAGCTCAAGAAAGTGACGAAAGAAAAGGAGGATGAAAAGAAACA
AGAGT
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protein sequence of NO18G01170.1

>NO18G01170.1-protein ID=NO18G01170.1-protein|Name=NO18G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MMVRRLLITAAAAASSTMTRVPVLAWTGPPPSHHTIRPFTSSILAPSLPT
IKAGRKRPRPIFPEALSTVDRMKKLRAQARLDKGMEDDDGGESDACADAP
ISEPSVELPISASHHATIVKWLQDLVIGFKLCPWAGPALNANAIRIVVHP
EESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVPGSTLADFQDFLD
VAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPIL
HLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLIEACRQHES
LSASTDESSRK*
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Synonyms
Publications