NO18G01170.1, NO18G01170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01170.1
Unique NameNO18G01170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1355
Alignment locationchr18:407022..408376 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:407022..408376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO18G01170.1 vs.
Match: EWM23316.1 (Protein of unknown function DUF1415 [Nannochloropsis gaditana])

HSP 1 Score: 283.9 bits (725), Expect = 6.100e-73
Identity = 164/306 (53.59%), Postives = 207/306 (67.65%), Query Frame = 0 
Query:    1 MMVRRLLITAAAAASSTMTRVPVLAWT--GPPPSH------HTIRPFTSSILAPSLPTIKAGRKRPR-PIFPEALSTVDRMKKLRAQARLDKGMEDDDGGESDACADAPISEPSVELPISASHHATIVKWLQDLVIGFKLCPWAGPALNANAIRIVVHPEESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVPGSTLADFQDFLDVAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPILHLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLIEACRQ 298
            MM+R L++TA  AAS+       + WT    P S       H+ RP      + +L +  A R+  +  +FP+ALS ++RM+ LRA+A+L    ED D   S A   A    PS   P S  H  TI+ W+Q +VI FKLCPWA PAL AN ++IVV P  SSL  L E  ++EASLLA+M + PE+QNLTTLIGVPG  L+DFQDFLD+   VD+ LDEL LRGKVQ+ASFHPD+ F DS  G DVENFTNRSP+PILHLLREVEVSRAL GY+GDP+ IYERNK  M+EAGAE+L+ ++ AC++
Sbjct:    1 MMLRHLMLTATVAASNAGCSCFFMGWTRRAAPASSLTRFLTHSRRPSPQPACSATLSSSSAKRQEAKGKMFPDALSPIERMQLLRARAQL----EDGDLPVSKAEQHASSDPPSFVNP-SEVHRHTILNWVQSMVIDFKLCPWASPALKANELKIVVAPVSSSLHGLLENVVEEASLLASMSERPEDQNLTTLIGVPGPLLSDFQDFLDLVAVVDECLDELDLRGKVQVASFHPDFAFEDS-TGDDVENFTNRSPLPILHLLREVEVSRALGGYLGDPACIYERNKITMKEAGAEQLRAVLTACQR 300
The following BLAST results are available for this feature:
BLAST of NO18G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23316.16.100e-7353.59Protein of unknown function DUF1415 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01170NO18G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01170.1NO18G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01170.1.cds1NO18G01170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01170.1 ID=NO18G01170.1|Name=NO18G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1355bp
TGAGGTAATTTATAAAAAATAAATCCCCGAAAAGAATCGTTAAAAATGCA
GTGCCGGTCTGGTAACTTATGATGGAGCCAAATGACTTGGGGGCGTACAG
AGCGGCGCCAATAGTATCCGACAAAGCAAGTCAATGTTTTGGTAGGAATA
CACGTGTAAATAGCATAACGATATAATTTCTGACTGTCAAGAAAGGAATT
TGCCTTGTAGCACGCTCCTCGCCGCTCCTTCCACAAACTTTGAAGGCGCG
TCCAAGTCCCCAACGCCTTTTGCCAGCAGTGCCTTCCTGCTGCCAACGGC
CGGTCTTCAAATGCCACCTTCACCCTTGCTAGTATCACGAATCACGAATC
AAAGCAAGCCACTCAATACCTCCTCGACACAGGCGAATGATGGTGCGGCG
CCTCCTCATCACCGCGGCCGCCGCTGCATCGAGCACTATGACGCGTGTCC
CCGTTCTTGCCTGGACAGGCCCCCCACCATCCCACCACACTATCCGGCCA
TTCACAAGTAGCATTCTTGCGCCATCGCTCCCCACGATCAAGGCCGGCCG
GAAACGTCCGCGGCCTATCTTTCCAGAAGCGCTTTCTACTGTGGATCGTA
TGAAAAAGTTAAGGGCACAGGCGCGATTGGATAAGGGCATGGAGGACGAC
GACGGCGGTGAAAGCGACGCATGTGCTGATGCGCCCATCTCGGAACCATC
AGTCGAATTGCCTATATCCGCTTCTCATCACGCCACCATCGTCAAATGGC
TGCAGGACCTGGTGATCGGATTCAAACTTTGTCCATGGGCTGGTCCTGCA
CTGAATGCAAATGCCATCAGAATCGTGGTCCACCCCGAAGAATCAAGTCT
TGAAGTGCTCTTCGAGACAGCAATAAAGGAAGCCTCTCTCCTTGCAACCA
TGCCTGATGGGCCAGAGGAACAGAACCTCACGACGCTCATTGGTGTGCCG
GGATCAACGTTGGCTGACTTTCAGGACTTTCTAGACGTGGCAGGGACAGT
TGACGACTTCTTAGACGAACTCCAACTTCGCGGGAAAGTGCAGCTTGCCT
CTTTCCATCCCGATTACAGGTTTGCTGACTCAAGGCCGGGGGCAGACGTG
GAAAATTTCACGAATCGAAGCCCGATGCCTATCTTGCATTTGTTGAGGGA
AGTCGAGGTGAGTCGCGCATTGGATGGGTATGTGGGTGATCCTTCACGGA
TATATGAACGCAACAAGGCTGTGATGCGGGAGGCGGGTGCTGAGAAATTG
CAAAAATTGATTGAGGCCTGTAGGCAACACGAATCACTATCAGCATCAAC
AGATGAGAGCTCAAGAAAGTGACGAAAGAAAAGGAGGATGAAAAGAAACA
AGAGT
back to top

protein sequence of NO18G01170.1

>NO18G01170.1-protein ID=NO18G01170.1-protein|Name=NO18G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MMVRRLLITAAAAASSTMTRVPVLAWTGPPPSHHTIRPFTSSILAPSLPT
IKAGRKRPRPIFPEALSTVDRMKKLRAQARLDKGMEDDDGGESDACADAP
ISEPSVELPISASHHATIVKWLQDLVIGFKLCPWAGPALNANAIRIVVHP
EESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVPGSTLADFQDFLD
VAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPIL
HLLREVEVSRALDGYVGDPSRIYERNKAVMREAGAEKLQKLIEACRQHES
LSASTDESSRK*
back to top

mRNA from alignment at chr18:407022..408376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01170.1 ID=NO18G01170.1|Name=NO18G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1355bp|location=Sequence derived from alignment at chr18:407022..408376- (Nannochloropsis oceanica)
TGAGGTAATTTATAAAAAATAAATCCCCGAAAAGAATCGTTAAAAATGCA
GTGCCGGTCTGGTAACTTATGATGGAGCCAAATGACTTGGGGGCGTACAG
AGCGGCGCCAATAGTATCCGACAAAGCAAGTCAATGTTTTGGTAGGAATA
CACGTGTAAATAGCATAACGATATAATTTCTGACTGTCAAGAAAGGAATT
TGCCTTGTAGCACGCTCCTCGCCGCTCCTTCCACAAACTTTGAAGGCGCG
TCCAAGTCCCCAACGCCTTTTGCCAGCAGTGCCTTCCTGCTGCCAACGGC
CGGTCTTCAAATGCCACCTTCACCCTTGCTAGTATCACGAATCACGAATC
AAAGCAAGCCACTCAATACCTCCTCGACACAGGCGAATGATGGTGCGGCG
CCTCCTCATCACCGCGGCCGCCGCTGCATCGAGCACTATGACGCGTGTCC
CCGTTCTTGCCTGGACAGGCCCCCCACCATCCCACCACACTATCCGGCCA
TTCACAAGTAGCATTCTTGCGCCATCGCTCCCCACGATCAAGGCCGGCCG
GAAACGTCCGCGGCCTATCTTTCCAGAAGCGCTTTCTACTGTGGATCGTA
TGAAAAAGTTAAGGGCACAGGCGCGATTGGATAAGGGCATGGAGGACGAC
GACGGCGGTGAAAGCGACGCATGTGCTGATGCGCCCATCTCGGAACCATC
AGTCGAATTGCCTATATCCGCTTCTCATCACGCCACCATCGTCAAATGGC
TGCAGGACCTGGTGATCGGATTCAAACTTTGTCCATGGGCTGGTCCTGCA
CTGAATGCAAATGCCATCAGAATCGTGGTCCACCCCGAAGAATCAAGTCT
TGAAGTGCTCTTCGAGACAGCAATAAAGGAAGCCTCTCTCCTTGCAACCA
TGCCTGATGGGCCAGAGGAACAGAACCTCACGACGCTCATTGGTGTGCCG
GGATCAACGTTGGCTGACTTTCAGGACTTTCTAGACGTGGCAGGGACAGT
TGACGACTTCTTAGACGAACTCCAACTTCGCGGGAAAGTGCAGCTTGCCT
CTTTCCATCCCGATTACAGGTTTGCTGACTCAAGGCCGGGGGCAGACGTG
GAAAATTTCACGAATCGAAGCCCGATGCCTATCTTGCATTTGTTGAGGGA
AGTCGAGGTGAGTCGCGCATTGGATGGGTATGTGGGTGATCCTTCACGGA
TATATGAACGCAACAAGGCTGTGATGCGGGAGGCGGGTGCTGAGAAATTG
CAAAAATTGATTGAGGCCTGTAGGCAACACGAATCACTATCAGCATCAAC
AGATGAGAGCTCAAGAAAGTGACGAAAGAAAAGGAGGATGAAAAGAAACA
AGAGT
back to top

Coding sequence (CDS) from alignment at chr18:407022..408376-

>NO18G01170.1 ID=NO18G01170.1|Name=NO18G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr18:407022..408376- (Nannochloropsis oceanica)
ATGATGGTGCGGCGCCTCCTCATCACCGCGGCCGCCGCTGCATCGAGCAC
TATGACGCGTGTCCCCGTTCTTGCCTGGACAGGCCCCCCACCATCCCACC
ACACTATCCGGCCATTCACAAGTAGCATTCTTGCGCCATCGCTCCCCACG
ATCAAGGCCGGCCGGAAACGTCCGCGGCCTATCTTTCCAGAAGCGCTTTC
TACTGTGGATCGTATGAAAAAGTTAAGGGCACAGGCGCGATTGGATAAGG
GCATGGAGGACGACGACGGCGGTGAAAGCGACGCATGTGCTGATGCGCCC
ATCTCGGAACCATCAGTCGAATTGCCTATATCCGCTTCTCATCACGCCAC
CATCGTCAAATGGCTGCAGGACCTGGTGATCGGATTCAAACTTTGTCCAT
GGGCTGGTCCTGCACTGAATGCAAATGCCATCAGAATCGTGGTCCACCCC
GAAGAATCAAGTCTTGAAGTGCTCTTCGAGACAGCAATAAAGGAAGCCTC
TCTCCTTGCAACCATGCCTGATGGGCCAGAGGAACAGAACCTCACGACGC
TCATTGGTGTGCCGGGATCAACGTTGGCTGACTTTCAGGACTTTCTAGAC
GTGGCAGGGACAGTTGACGACTTCTTAGACGAACTCCAACTTCGCGGGAA
AGTGCAGCTTGCCTCTTTCCATCCCGATTACAGGTTTGCTGACTCAAGGC
CGGGGGCAGACGTGGAAAATTTCACGAATCGAAGCCCGATGCCTATCTTG
CATTTGTTGAGGGAAGTCGAGGTGAGTCGCGCATTGGATGGGTATGTGGG
TGATCCTTCACGGATATATGAACGCAACAAGGCTGTGATGCGGGAGGCGG
GTGCTGAGAAATTGCAAAAATTGATTGAGGCCTGTAGGCAACACGAATCA
CTATCAGCATCAACAGATGAGAGCTCAAGAAAGTGA
back to top
Synonyms
Publications