NO18G01090, NO18G01090 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G01090
Unique Name	NO18G01090
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1478
Alignment location	chr18:384490..385967 +

Link to JBrowse

Properties


Property Name	Value
Description	Kinase phosphorylation domain protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:384490..385967 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019315	Kinase_phosphorylation_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0016301	kinase activity

Homology

[Close]

BLAST of NO18G01090 vs. NCBI_GenBank
Match: XP_008897007.1 (hypothetical protein PPTG_05247 [Phytophthora parasitica INRA-310] >ETN17445.1 hypothetical protein PPTG_05247 [Phytophthora parasitica INRA-310] >ETP32364.1 hypothetical protein F442_18912 [Phytophthora parasitica P10297] >KUF82418.1 uncharacterized protein AM587_10004979 [Phytophthora nicotianae])

HSP 1 Score: 153.7 bits (387), Expect = 1.100e-33
Identity = 92/167 (55.09%), Postives = 119/167 (71.26%), Query Frame = 0

Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAP--AARHEHLPKGKSMVEREIERMKKEQAE 166
            MSFG KT YR GG RGG D+FKWEDVK++ YRE+YLGHS++APVGRWQKGKDL WY KA+K      + AEA  + ELA  ++RDED++N ALG+AP ++      L ASE+K+LL RG +ER  MD ERVEGLGAAP  A   E  PK +++ ER  +++   +A+
Sbjct:    1 MSFG-KTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK-----SQRAEA-LQAELALAKQRDEDLMNEALGIAPRKRREPAEGLSASEMKELLKRGEAERDGMDVERVEGLGAAPVEAEGFETGPK-RTLAERYKDQLVSGKAD 159

[Close]

BLAST of NO18G01090 vs. NCBI_GenBank
Match: ETI34347.1 (hypothetical protein F443_19136 [Phytophthora parasitica P1569])

HSP 1 Score: 152.9 bits (385), Expect = 1.900e-33
Identity = 92/167 (55.09%), Postives = 119/167 (71.26%), Query Frame = 0

Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAP--AARHEHLPKGKSMVEREIERMKKEQAE 166
            MSFG KT YR GG RGG D+FKWEDVK++ YRE+YLGHS++APVGRWQKGKDL WY KA+K      + AEA  + ELA  ++RDED++N ALG+AP ++      L ASE+K+LL RG +ER  MD ERVEGLGAAP  A   E  PK +++ ER  +++   +A+
Sbjct:    1 MSFG-KTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK-----LQRAEA-LQAELALAKQRDEDLMNEALGIAPRKRREPAEGLSASEMKELLKRGEAERDGMDVERVEGLGAAPVEAEGFETGPK-RTLAERYKDQLVSGKAD 159

[Close]

BLAST of NO18G01090 vs. NCBI_GenBank
Match: ETK74692.1 (hypothetical protein L915_18559 [Phytophthora parasitica])

HSP 1 Score: 152.9 bits (385), Expect = 1.900e-33
Identity = 92/167 (55.09%), Postives = 119/167 (71.26%), Query Frame = 0

Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAP--AARHEHLPKGKSMVEREIERMKKEQAE 166
            MSFG KT YR GG RGG D+FKWEDVK++ YRE+YLGHS++APVGRWQKGKDL WY KA+K      + AEA  + ELA  ++RDED++N ALG+AP ++      L ASE+K+LL RG +ER  MD ERVEGLGAAP  A   E  PK +++ ER  +++   +A+
Sbjct:    1 MSFG-KTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK-----LQRAEA-LQAELALAKQRDEDLMNEALGIAPRKRREPAEGLSASEMKELLKRGEAERDGMDVERVEGLGAAPVEAEGFETGPK-RTLAERYKDQLVSGKAD 159

[Close]

BLAST of NO18G01090 vs. NCBI_GenBank
Match: ETO63125.1 (hypothetical protein F444_19092 [Phytophthora parasitica P1976])

HSP 1 Score: 152.9 bits (385), Expect = 1.900e-33
Identity = 92/167 (55.09%), Postives = 119/167 (71.26%), Query Frame = 0

Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAP--AARHEHLPKGKSMVEREIERMKKEQAE 166
            MSFG KT YR GG RGG D+FKWEDVK++ YRE+YLGHS++APVGRWQKGKDL WY KA+K      + AEA  + ELA  ++RDED++N ALG+AP ++      L ASE+K+LL RG +ER  MD ERVEGLGAAP  A   E  PK +++ ER  +++   +A+
Sbjct:    1 MSFG-KTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK-----LQRAEA-LQAELALAKQRDEDLMNEALGIAPRKRREPAEGLSASEMKELLKRGEAERDGMDVERVEGLGAAPVEAEGFETGPK-RTLAERYKDQLVSGKAD 159

[Close]

BLAST of NO18G01090 vs. NCBI_GenBank
Match: POM68938.1 (T-complex protein 1 subunit zeta [Phytophthora palmivora var. palmivora])

HSP 1 Score: 151.8 bits (382), Expect = 4.200e-33
Identity = 91/167 (54.49%), Postives = 118/167 (70.66%), Query Frame = 0

Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAP--AARHEHLPKGKSMVEREIERMKKEQAE 166
            MSFG KT YR GG RGG D+FKWEDVK++ YRE+YLGHS++APVGRWQKGKDL WY KA+K      + AEA  + ELA  ++RDED++N ALG+AP ++      L  SE+K+LL RG +ER  MD ERVEGLGAAP  A   E  PK +++ ER  +++   +A+
Sbjct:    1 MSFG-KTNYRIGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGKDLTWYAKANK-----LQRAEA-LQAELALAKQRDEDLMNEALGIAPKKRHEPREGLSTSEMKELLKRGEAERDGMDVERVEGLGAAPVEAEGFEMGPK-RTLAERYKDQLASGKAD 159

[Close]

BLAST of NO18G01090 vs. NCBI_GenBank
Match: XP_008604933.1 (hypothetical protein SDRG_01194 [Saprolegnia diclina VS20] >EQC41219.1 hypothetical protein SDRG_01194 [Saprolegnia diclina VS20])

HSP 1 Score: 151.4 bits (381), Expect = 5.400e-33
Identity = 82/137 (59.85%), Postives = 102/137 (74.45%), Query Frame = 0

Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAA 138
            MSFG KT YR GG RGGQD+FKW+DVK++ YRE+YLGHSL+APVGRW KGKDL WY K        K +  A    E+A  R+RDED++N ALG+AP ++  V   LDA+E+K+LL RG +ERGD DAERV+G+GAA
Sbjct:    1 MSFG-KTNYRVGGTRGGQDQFKWDDVKNDKYRENYLGHSLQAPVGRWAKGKDLTWYAKT-------KAEQSAALADEIALARQRDEDLMNEALGIAPKQRRQV-GGLDANEMKELLRRGVTERGDADAERVQGVGAA 128

[Close]

BLAST of NO18G01090 vs. NCBI_GenBank
Match: OQS02430.1 (T-complex protein 1 subunit zeta [Thraustotheca clavata])

HSP 1 Score: 151.0 bits (380), Expect = 7.100e-33
Identity = 82/137 (59.85%), Postives = 102/137 (74.45%), Query Frame = 0

Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAA 138
            MSFG KT YR GG RGGQD+FKWEDVK++ YRE+YLGHSL APVGRW KGKDL WY        K K++ +A    E+A  R+RDED++N ALG+AP R+    + LDA+E+K+LL RG +ERG  DAERV+G+GAA
Sbjct:    1 MSFG-KTNYRFGGTRGGQDQFKWEDVKNDKYRENYLGHSLNAPVGRWAKGKDLTWYA-------KNKDEQKAALAEEIAIARQRDEDLMNEALGIAPKRKREA-SGLDANEMKELLKRGETERGVDDAERVQGVGAA 128

[Close]

BLAST of NO18G01090 vs. NCBI_GenBank
Match: GAX96711.1 (T-complex protein 1 subunit zeta, partial [Pythium insidiosum])

HSP 1 Score: 151.0 bits (380), Expect = 7.100e-33
Identity = 83/161 (51.55%), Postives = 110/161 (68.32%), Query Frame = 0

Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAPAARHEHLPKGKSMVEREIERMKK 162
            MSFG KT YR+GG RGG D+FKW+DVK++ YRE+YLGHSL APVGRWQ GKDL WY K        +ED  A  + E+A  ++RD+++++ ALG+AP R+      L+A+E+K+LL RGAS+R  +D ERVEG+GAAPA         K+M E   E + K
Sbjct:  764 MSFG-KTNYRNGGTRGGADQFKWDDVKNDKYRENYLGHSLHAPVGRWQXGKDLTWYNKL------SREDRAAALKAEIALAKQRDQELMDQALGIAPKRRVEPTGPLEAAEVKELLKRGASDREGLDGERVEGVGAAPAPSGYDTRPKKTMAEXYEESLAK 917

[Close]

BLAST of NO18G01090 vs. NCBI_GenBank
Match: XP_009838126.1 (hypothetical protein, variant 2 [Aphanomyces astaci] >XP_009838127.1 hypothetical protein, variant 3 [Aphanomyces astaci] >ETV72444.1 hypothetical protein, variant 2 [Aphanomyces astaci] >ETV72445.1 hypothetical protein, variant 3 [Aphanomyces astaci])

HSP 1 Score: 150.6 bits (379), Expect = 9.300e-33
Identity = 89/164 (54.27%), Postives = 110/164 (67.07%), Query Frame = 0

Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAP--AARHEHLPKGKSMVEREIERMKKE 163
            MSFG KT YR GG RGGQD+FKW+DVK++ YRE+YLGHSL APVGRW KGKDL WY+K  KGG+       A    E+A  ++RDED +N ALG+AP R       LDA+E+K LL RG +ER D DAERVEGLGAA       +   K ++M ER  + + K+
Sbjct:    1 MSFG-KTNYRFGGTRGGQDQFKWDDVKNDKYRENYLGHSLNAPVGRWVKGKDLTWYSKG-KGGQ------SAVLAEEIALAKQRDEDRMNEALGIAPKRHHEPTGALDANEMKTLLKRGETERNDGDAERVEGLGAATFVTGYEDPTAKRRTMAERYQDNVGKQ 156

[Close]

BLAST of NO18G01090 vs. NCBI_GenBank
Match: XP_012194698.1 (hypothetical protein SPRG_01109 [Saprolegnia parasitica CBS 223.65] >KDO35045.1 hypothetical protein SPRG_01109 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 150.6 bits (379), Expect = 9.300e-33
Identity = 82/137 (59.85%), Postives = 102/137 (74.45%), Query Frame = 0

Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAA 138
            MSFG KT YR GG RGGQD+FKW+DVK++ YRE+YLGHSL+APVGRW KGKDL WY K        K +  A    E+A  R+RDED++N ALG+AP ++  V   LDA+E+K+LL RG +ERGD DAERV+G+GAA
Sbjct:    1 MSFG-KTNYRVGGTRGGQDQFKWDDVKNDKYRENYLGHSLQAPVGRWAKGKDLTWYAKT-------KAEQSAALADEIALARQRDEDLMNEALGIAPKQRRQV-GGLDANEMKELLRRGVTERGDGDAERVQGVGAA 128

The following BLAST results are available for this feature:

BLAST of NO18G01090 vs. NCBI_GenBank

BLAST of NO18G01090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_008897007.1	1.100e-33	55.09	hypothetical protein PPTG_05247 [Phytophthora para...	[more]
ETI34347.1	1.900e-33	55.09	hypothetical protein F443_19136 [Phytophthora para...	[more]
ETK74692.1	1.900e-33	55.09	hypothetical protein L915_18559 [Phytophthora para...	[more]
ETO63125.1	1.900e-33	55.09	hypothetical protein F444_19092 [Phytophthora para...	[more]
POM68938.1	4.200e-33	54.49	T-complex protein 1 subunit zeta [Phytophthora pal...	[more]
XP_008604933.1	5.400e-33	59.85	hypothetical protein SDRG_01194 [Saprolegnia dicli...	[more]
OQS02430.1	7.100e-33	59.85	T-complex protein 1 subunit zeta [Thraustotheca cl...	[more]
GAX96711.1	7.100e-33	51.55	T-complex protein 1 subunit zeta, partial [Pythium...	[more]
XP_009838126.1	9.300e-33	54.27	hypothetical protein, variant 2 [Aphanomyces astac...	[more]
XP_012194698.1	9.300e-33	59.85	hypothetical protein SPRG_01109 [Saprolegnia paras...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL008	nonsL008	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR064	ncniR064	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR043	ngnoR043	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003964	NSK003964	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO18G01090.1	NO18G01090.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609074	gene_9534	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100053g24	gene7131	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO18G01090.1	NO18G01090.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO18G01090 ID=NO18G01090|Name=NO18G01090|organism=Nannochloropsis oceanica|type=gene|length=1478bp
AGCTAGCTGGACTGAATCAAGGACAGCAAGCATGTCGTTCGGGCCGAAAA
CGGGCTACCGCGACGGCGGCAATAGAGGCGGACAGGACCGATTCAAGTGG
GAGGATGTGAAAGACGgtaggcgtggtgcttgattgggtgggtggggtga
ggaatgatcagcatggacatgactcatatctctattttcctccttgcccg
ttctccttccctccttccccgctccttccaaccccttcgtagAACACTAC
CGTGAGCATTATTTGGGACACAGCCTCAAGGCCCCCGTCGGACGCTGGCA
GAAAGGCAAAGACCTAATGTGGTACACCAAAGCAGACAAAGGAGGGGAGA
AAGGGAAAGAGGATGCGGAGGCGCAACGACGGAGGGAGTTAGCGGAGTTT
CGACGACGGGACGAAGACATGATTAATGCTGCCTTGGGGTTGGCACCGGC
ACGTCAGGCAGTAGTAGAGACTACACTCGATGCAAGTGAGCTGAAACAGC
TGCTGGCAAGGGGGGCGAGCGAGAGGGGGGATATGGATGCAGAGCGCGTG
GAGGGTCTCGGAGCAGCGCCTGCAGCGAGGCACGAGCACTTGCCCAAGGG
AAAGAGTATGGTTGAGCGAGAGATTGAAAGGATGAAGAAAGAACAGGCGG
AGGGGAGAGGTTTTGAATACGAGGAGGATGCGAGTCATATGCATGAGGAA
GAAGGGAACGATGTGGTGAAGGACGGAGGGGGAAAGAGGAAGAAGAATAG
AGATGAAGACAAGGAGAAGAAGGAGAAGAAAAAGAGGAAGAAGGAGGAAA
AGAAAAAGGAGGAAAAGAAGAAAAAGAAGGTGGTGAAAAAGGAGCGAAAG
AAGGCAAAGAAAGCGATGCGCAAGGAAGAAGATGATGAGGGGGCAGGAAG
GGAGGGAGGTCGTGGCCAAGGACGCTCCGAGAGGGGTCGAAGCTCGAGCG
ACAACAGCTGCAGGAGCAGCAGCGCCGGCCCCGAGCATCGCATGCGACAC
GTATCGATAGACAAAACTCACCATGATGGTGCAGAGGAGAGGCAGAGGGA
GGCGGGGCGCTGTGGGGGAAAACGCCCTGAAAGAGAGAGAGGCCGAAGCG
CCAGCCGCAGCAGTAGGAGCGCCAGTCCCGATGACCGGAAGCGACGGCGA
CTACGGACAGAGAGCATATCACGCTCCAGGTCCAGACCTCGTAATTCTTA
TGTCCGTGAGCAGGGCCGCCGCCGCGGGAGATAATCATGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGG
GGGTCAAGAGAAAAAAATGGCAAGTAAATGGAAGGAAACCTGTACAAAGA
AAGCCGCGAAACGTTAACGGGAGAACGTGAACAATTCTCCGAGAAAGAAG
GGCAAAAAGGAAGAAGAACGGCACATGCACGACCCAGCCATTCAATGTGT
CGTGGGAACTCTCTGACCATTACATTTC

protein sequence of NO18G01090.1

>NO18G01090.1-protein ID=NO18G01090.1-protein|Name=NO18G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKG
KDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQ
AVVETTLDASELKQLLARGASERGDMDAERVEGLGAAPAARHEHLPKGKS
MVEREIERMKKEQAEGRGFEYEEDASHMHEEEGNDVVKDGGGKRKKNRDE
DKEKKEKKKRKKEEKKKEEKKKKKVVKKERKKAKKAMRKEEDDEGAGREG
GRGQGRSERGRSSSDNSCRSSSAGPEHRMRHVSIDKTHHDGAEERQREAG
RCGGKRPERERGRSASRSSRSASPDDRKRRRLRTESISRSRSRPRNSYVR
EQGRRRGR*

Synonyms

Publications