NO18G01090.1, NO18G01090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01090.1
Unique NameNO18G01090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1352
Alignment locationchr18:384490..385967 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:384490..385967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01090.1 vs.
Match: EWM23322.1 (Kinase phosphorylation domain protein [Nannochloropsis gaditana])

HSP 1 Score: 260.4 bits (664), Expect = 8.300e-66
Identity = 174/297 (58.59%), Postives = 207/297 (69.70%), Query Frame = 0 
Query:    1 MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQAVVETTLDASELKQLLARGASERGDMDAERVEGLGAAPAARHEHLPKGKSMVEREIERMKKEQAEGRGFEYEEDASHMHEEEGNDVVKDGGGKRKKNRDEDKEKKEKKK------RKKEEKKKEEKKKKKVVKKERKKAKKAMRKEE---------DDEGAGREGGRGQGRSERGRSSSDNSCRSSSAGPEHRMRHV 283
            MSFGPKTGYRDGG RGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKA K      ED EAQR+RE+AE R+RDE+MINAALG+AP  QAVVE+ L+ASELKQLL +G SER D+  ERVEG+GAAPA RHEHLPKG SMVEREIERMK  QA+G  F+YE+DA+H++ E+     + GG     N+ +D  K+E  K      R++++ KKEEK++KK  K+ERK+ KK  RKE+               R    G+ RS   +    +  RS S     R R V
Sbjct:   35 MSFGPKTGYRDGGTRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKGKDLMWYTKAGKVKSGEAEDPEAQRQREVAEIRQRDEEMINAALGMAPKYQAVVESRLEASELKQLLGKGLSERDDLHGERVEGVGAAPAPRHEHLPKGLSMVEREIERMKSAQAQGVAFKYEDDATHLYAEQ---EAEGGGHTHAGNKRKDSSKRESLKDYGGSTREEKKLKKEEKRRKKEEKRERKQDKKRQRKEKILAVAEEAMPSRHTSRPARNGRSRSPDQKHRRQDGGRSCSPAHGSRGRRV 328
The following BLAST results are available for this feature:
BLAST of NO18G01090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23322.18.300e-6658.59Kinase phosphorylation domain protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01090NO18G01090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01090.1NO18G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01090.1.cds1NO18G01090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01090.1.cds2NO18G01090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01090.1 ID=NO18G01090.1|Name=NO18G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1352bp
AGCTAGCTGGACTGAATCAAGGACAGCAAGCATGTCGTTCGGGCCGAAAA
CGGGCTACCGCGACGGCGGCAATAGAGGCGGACAGGACCGATTCAAGTGG
GAGGATGTGAAAGACGAACACTACCGTGAGCATTATTTGGGACACAGCCT
CAAGGCCCCCGTCGGACGCTGGCAGAAAGGCAAAGACCTAATGTGGTACA
CCAAAGCAGACAAAGGAGGGGAGAAAGGGAAAGAGGATGCGGAGGCGCAA
CGACGGAGGGAGTTAGCGGAGTTTCGACGACGGGACGAAGACATGATTAA
TGCTGCCTTGGGGTTGGCACCGGCACGTCAGGCAGTAGTAGAGACTACAC
TCGATGCAAGTGAGCTGAAACAGCTGCTGGCAAGGGGGGCGAGCGAGAGG
GGGGATATGGATGCAGAGCGCGTGGAGGGTCTCGGAGCAGCGCCTGCAGC
GAGGCACGAGCACTTGCCCAAGGGAAAGAGTATGGTTGAGCGAGAGATTG
AAAGGATGAAGAAAGAACAGGCGGAGGGGAGAGGTTTTGAATACGAGGAG
GATGCGAGTCATATGCATGAGGAAGAAGGGAACGATGTGGTGAAGGACGG
AGGGGGAAAGAGGAAGAAGAATAGAGATGAAGACAAGGAGAAGAAGGAGA
AGAAAAAGAGGAAGAAGGAGGAAAAGAAAAAGGAGGAAAAGAAGAAAAAG
AAGGTGGTGAAAAAGGAGCGAAAGAAGGCAAAGAAAGCGATGCGCAAGGA
AGAAGATGATGAGGGGGCAGGAAGGGAGGGAGGTCGTGGCCAAGGACGCT
CCGAGAGGGGTCGAAGCTCGAGCGACAACAGCTGCAGGAGCAGCAGCGCC
GGCCCCGAGCATCGCATGCGACACGTATCGATAGACAAAACTCACCATGA
TGGTGCAGAGGAGAGGCAGAGGGAGGCGGGGCGCTGTGGGGGAAAACGCC
CTGAAAGAGAGAGAGGCCGAAGCGCCAGCCGCAGCAGTAGGAGCGCCAGT
CCCGATGACCGGAAGCGACGGCGACTACGGACAGAGAGCATATCACGCTC
CAGGTCCAGACCTCGTAATTCTTATGTCCGTGAGCAGGGCCGCCGCCGCG
GGAGATAATCATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGCAAGGGGGTCAAGAGAAAAAAATGGCAAGTA
AATGGAAGGAAACCTGTACAAAGAAAGCCGCGAAACGTTAACGGGAGAAC
GTGAACAATTCTCCGAGAAAGAAGGGCAAAAAGGAAGAAGAACGGCACAT
GCACGACCCAGCCATTCAATGTGTCGTGGGAACTCTCTGACCATTACATT
TC
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protein sequence of NO18G01090.1

>NO18G01090.1-protein ID=NO18G01090.1-protein|Name=NO18G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKG
KDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQ
AVVETTLDASELKQLLARGASERGDMDAERVEGLGAAPAARHEHLPKGKS
MVEREIERMKKEQAEGRGFEYEEDASHMHEEEGNDVVKDGGGKRKKNRDE
DKEKKEKKKRKKEEKKKEEKKKKKVVKKERKKAKKAMRKEEDDEGAGREG
GRGQGRSERGRSSSDNSCRSSSAGPEHRMRHVSIDKTHHDGAEERQREAG
RCGGKRPERERGRSASRSSRSASPDDRKRRRLRTESISRSRSRPRNSYVR
EQGRRRGR*
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mRNA from alignment at chr18:384490..385967+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01090.1 ID=NO18G01090.1|Name=NO18G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1478bp|location=Sequence derived from alignment at chr18:384490..385967+ (Nannochloropsis oceanica)
AGCTAGCTGGACTGAATCAAGGACAGCAAGCATGTCGTTCGGGCCGAAAA
CGGGCTACCGCGACGGCGGCAATAGAGGCGGACAGGACCGATTCAAGTGG
GAGGATGTGAAAGACGGTAGGCGTGGTGCTTGATTGGGTGGGTGGGGTGA
GGAATGATCAGCATGGACATGACTCATATCTCTATTTTCCTCCTTGCCCG
TTCTCCTTCCCTCCTTCCCCGCTCCTTCCAACCCCTTCGTAGAACACTAC
CGTGAGCATTATTTGGGACACAGCCTCAAGGCCCCCGTCGGACGCTGGCA
GAAAGGCAAAGACCTAATGTGGTACACCAAAGCAGACAAAGGAGGGGAGA
AAGGGAAAGAGGATGCGGAGGCGCAACGACGGAGGGAGTTAGCGGAGTTT
CGACGACGGGACGAAGACATGATTAATGCTGCCTTGGGGTTGGCACCGGC
ACGTCAGGCAGTAGTAGAGACTACACTCGATGCAAGTGAGCTGAAACAGC
TGCTGGCAAGGGGGGCGAGCGAGAGGGGGGATATGGATGCAGAGCGCGTG
GAGGGTCTCGGAGCAGCGCCTGCAGCGAGGCACGAGCACTTGCCCAAGGG
AAAGAGTATGGTTGAGCGAGAGATTGAAAGGATGAAGAAAGAACAGGCGG
AGGGGAGAGGTTTTGAATACGAGGAGGATGCGAGTCATATGCATGAGGAA
GAAGGGAACGATGTGGTGAAGGACGGAGGGGGAAAGAGGAAGAAGAATAG
AGATGAAGACAAGGAGAAGAAGGAGAAGAAAAAGAGGAAGAAGGAGGAAA
AGAAAAAGGAGGAAAAGAAGAAAAAGAAGGTGGTGAAAAAGGAGCGAAAG
AAGGCAAAGAAAGCGATGCGCAAGGAAGAAGATGATGAGGGGGCAGGAAG
GGAGGGAGGTCGTGGCCAAGGACGCTCCGAGAGGGGTCGAAGCTCGAGCG
ACAACAGCTGCAGGAGCAGCAGCGCCGGCCCCGAGCATCGCATGCGACAC
GTATCGATAGACAAAACTCACCATGATGGTGCAGAGGAGAGGCAGAGGGA
GGCGGGGCGCTGTGGGGGAAAACGCCCTGAAAGAGAGAGAGGCCGAAGCG
CCAGCCGCAGCAGTAGGAGCGCCAGTCCCGATGACCGGAAGCGACGGCGA
CTACGGACAGAGAGCATATCACGCTCCAGGTCCAGACCTCGTAATTCTTA
TGTCCGTGAGCAGGGCCGCCGCCGCGGGAGATAATCATGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGG
GGGTCAAGAGAAAAAAATGGCAAGTAAATGGAAGGAAACCTGTACAAAGA
AAGCCGCGAAACGTTAACGGGAGAACGTGAACAATTCTCCGAGAAAGAAG
GGCAAAAAGGAAGAAGAACGGCACATGCACGACCCAGCCATTCAATGTGT
CGTGGGAACTCTCTGACCATTACATTTC
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Coding sequence (CDS) from alignment at chr18:384490..385967+

>NO18G01090.1 ID=NO18G01090.1|Name=NO18G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr18:384490..385967+ (Nannochloropsis oceanica)
ATGTCGTTCGGGCCGAAAACGGGCTACCGCGACGGCGGCAATAGAGGCGG
ACAGGACCGATTCAAGTGGGAGGATGTGAAAGACGAACACTACCGTGAGC
ATTATTTGGGACACAGCCTCAAGGCCCCCGTCGGACGCTGGCAGAAAGGC
AAAGACCTAATGTGGTACACCAAAGCAGACAAAGGAGGGGAGAAAGGGAA
AGAGGATGCGGAGGCGCAACGACGGAGGGAGTTAGCGGAGTTTCGACGAC
GGGACGAAGACATGATTAATGCTGCCTTGGGGTTGGCACCGGCACGTCAG
GCAGTAGTAGAGACTACACTCGATGCAAGTGAGCTGAAACAGCTGCTGGC
AAGGGGGGCGAGCGAGAGGGGGGATATGGATGCAGAGCGCGTGGAGGGTC
TCGGAGCAGCGCCTGCAGCGAGGCACGAGCACTTGCCCAAGGGAAAGAGT
ATGGTTGAGCGAGAGATTGAAAGGATGAAGAAAGAACAGGCGGAGGGGAG
AGGTTTTGAATACGAGGAGGATGCGAGTCATATGCATGAGGAAGAAGGGA
ACGATGTGGTGAAGGACGGAGGGGGAAAGAGGAAGAAGAATAGAGATGAA
GACAAGGAGAAGAAGGAGAAGAAAAAGAGGAAGAAGGAGGAAAAGAAAAA
GGAGGAAAAGAAGAAAAAGAAGGTGGTGAAAAAGGAGCGAAAGAAGGCAA
AGAAAGCGATGCGCAAGGAAGAAGATGATGAGGGGGCAGGAAGGGAGGGA
GGTCGTGGCCAAGGACGCTCCGAGAGGGGTCGAAGCTCGAGCGACAACAG
CTGCAGGAGCAGCAGCGCCGGCCCCGAGCATCGCATGCGACACGTATCGA
TAGACAAAACTCACCATGATGGTGCAGAGGAGAGGCAGAGGGAGGCGGGG
CGCTGTGGGGGAAAACGCCCTGAAAGAGAGAGAGGCCGAAGCGCCAGCCG
CAGCAGTAGGAGCGCCAGTCCCGATGACCGGAAGCGACGGCGACTACGGA
CAGAGAGCATATCACGCTCCAGGTCCAGACCTCGTAATTCTTATGTCCGT
GAGCAGGGCCGCCGCCGCGGGAGATAA
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Synonyms
Publications